RNA id: XM_039808233.1


Basic Information

Item Value
RNA id XM_039808233.1
length 2733
RNA type mRNA
GC content 0.45
exon number 9
gene id dnaja2b
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 15051850 ~ 15057130 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCGAACGTTGTGGACACTAAGCTATACGACATCCTCGGGGTTTCACCGTCTGCCTCTGAAAATGAACTAAAAAAGGCCTACCGCAAATTGGCCAAAGAGTACCATCCTGACAAGAACCCAGATGCTGGAGACAAGtttaAAGAGATCAGTTTCGCATATGAGGTACTGACAAATCCAGAAAAGAAGGAGCTTTATGATCGCTATGGAGAACAGGGGCTACGGGAGGGAGGAGGCGGCGGCCCTGGCATGGACGATATCTTCTCTCATATTTTTGGCGGAGGACTGTTTGGGTTCATGGGGGGGCAGGGCAGAGGACGCAATGGaggcaggaggagaggagatgatATGGTACACCCCTTGAAAGTTTCTCTTGAAGACCTCTACAATGGCAAAACCACCAAACTGCAGCTCAGTAAGAATGTGCTCTGTGCTGCCTGTAATGGTCAGGGGGGTAAGGCAGGAGCAGTGCAGAAGTGTGTGGCATGCAGAGGACGAGGTATGAGAATCATGATTAGACAACTGGCCCCTGGGATGGTTCAACAGATGCAGTCAGTCTGCACAGACTGCAATGGAGAGGGTGAGGTGATAAATGAGAAGGACCGCTGCAGAAAGTGTGAGGGTCATAAGGTGAGTAAGGAGACTAAGCTTCTGGAGGTGCATGTGGACAAAGGCATGAGACATGGACAGAAGATCACATTCTCTGGGGAAGCTGACCAAGCACCAGGCGTCGAACCAGGAGATATAGTCCTTGTGCTGCAAGAGAAAGAACATGAGGAATTCCGCCGTGATGGCAGTGACCTTCACATGGTCCAACGTATCGGCCTGGTTGAGGCTCTGTGTGGCTTCCAGATGACGGTTGCACACCTTGATGGACGTCAGTTGCTTGTCAAATATCCACCTGGCAAGGTCATCGAGCCAGgTTCTATTCGAATGGTGAAGGGAGAGGGAATGCCTCAGTACAGAAACCCATTTGAGAAGGGAGACCTTTATGTCAAATTTGACGTCCAGTTTCCTGAAAACAACTGGATTAGCCCTGAAAAACTGAATgaaCTCGAGTGCTTGCTGCCTGCTCGTGCTGAGAATCCTGTTATTGCAGCCGATGCAGAGGAAGTTGACCTGACAGAATTTGACAAGAGTCAAGGGTCAGGTAGTGGAGCCAGGAGAGAGGCCTACAATGATAGTTCTGATGAGGAAGGGGGCCATCATGGCCCAGGGGTGCAGTGCGCACACCAATAGAAAGACTCATTCATTAAGACATGTACACACATAAACGCATAAATACATGAACATCCCTTGAGTCCCATTGCTAACACCATTCAAGACTTGACGCACATACATGCAGATTTCTCTCCTTTCATGATTCGCATGAAAAAGAGatatacacaaatacatatacacGTTAATCCACCCTTCTCAGTTCCATGGTGCCCATAAGTCATAGAAATGCTGGACGTTTGATGACCATTTTGTGTTTATGGACAGTAGTGCTCATCAAAGCCTCCAGCAAGAAGGTTCGCTGAATGAACTTGACTCGGACCGCCCTGTTTTCATCCAAGGCTTTTACCTTTCACTGTGGGAAACAGCCGTCTAGTGTATAAAATGCAAATATTGTTGACTATCTTGTATAAGGTGTAGTTTAGTCTatcacacacacgcgcatgcTGCTTTCTTGCTGAAGCTCTTGCACATGTAGATCCAGGGTCCGGACAGGACACTACAGAGAAATCTGACACCACGCCCGTTTAAATTTCAGTGTGTCACTGCTATCAAAGTGCCCTGCTTTCATAAGAGCTGACCAGATTACAGCCCTAAAAGTGTGTCCTCTGCACAGCCTGCTGAGAACCGCACGTTTAAACCACCTCATCCTCTAAGACAAACCGGCATATTTTGAAAAGCGgactttttcagtttagtccCCAGTTGGCCCATTGCTGAAATTATAAAACCCTGAGTAAAGCACCTGTCAGCCAGGCGCCATATTTTCTTAGTTTGGAATTCAaacttgtttgtctttgttgattTGAATGTTAGTGTGTTCGAGACCACAGAACTTGAACCTAAGTTGTGTTCATTTGATTTGAGGACACACCTTGTGTACGTTGTATGTGTATAATGCAGTggctcagtgtgtgtgagcTGCTGTAGAATGTCCTGGCTTATTAGAGTGAAAGGTATTCCTGCTTTGTGTTGGACTGCAGTGTAAGTAGACAATTTAAGAtgaaaaaacaatgtttatttGCTGAGAATCTCTCCCATGTAGACATTTCCCTCTACTCACCAGGACTGAGAGATCCTCCTCTCCTGCAGGAAAACCGCTGGGCCCACACCAAACTTCTGTATTATACATATCTCCCCATCGTAGAGTTGTTAGACAAACTTATATACTTTGACATGTTACAATATTCCCATCACCATAGACCTGTAAATAAATATAGCCCCAGTCCATAGGTGCATTCAAAGTCTACAGCAGTGTCCTTCGTCTCCTCGCATTATTTCTTACACAAGTATTGGCCAACAGTGTCAATATAAATGTTATGTTCACATGAAGGAAAGTTGATGGAACCTCTGTAGATTTGTAACATGCACCTCTGTGACTCATTGTGTATCTAATTTAGGCCACGGGGATAATGTGTACACAACTAAAGGGGGGGTCATTGATAAATGACATTATTGTTGATGCTTATGTTTGTCAATATGGTAATTAACTGTATAAtaaacagtgacttcaaa

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0009408 response to heat biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031072 heat shock protein binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09503 DNAJA2; DnaJ homolog subfamily A member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114375 lncRNA downstream 96443 14954128 ~ 14955407 (-) True G84948
TU114376 lncRNA downstream 96443 14954128 ~ 14955407 (-) False G84948
TU114433 lncRNA downstream 199827 14851720 ~ 14852023 (-) True G84971
XR_005640144.1 lncRNA downstream 243782 14807411 ~ 14808068 (-) True LOC120564774
TU114412 lncRNA downstream 484581 14558458 ~ 14567269 (-) True G84960
TU114472 lncRNA upstream 595 15057725 ~ 15057929 (-) True G85007
TU114476 lncRNA upstream 5481 15062611 ~ 15063137 (-) True G85011
TU114507 lncRNA upstream 121210 15178340 ~ 15179173 (-) True G85027
TU114585 lncRNA upstream 304707 15361837 ~ 15363425 (-) True G85084
XR_005639985.1 lncRNA upstream 396079 15453209 ~ 15455514 (-) True LOC120563611
XM_039808420.1 mRNA downstream 39034 15004301 ~ 15012816 (-) True LOC120563916
XM_039808419.1 mRNA downstream 61336 14973281 ~ 14990514 (-) True LOC120563915
XM_039808185.1 mRNA downstream 84067 14961860 ~ 14967783 (-) True si:ch1073-390k14.1
XM_039808414.1 mRNA downstream 132574 14903173 ~ 14919276 (-) True elapor2a
XM_039809864.1 mRNA downstream 256720 14757979 ~ 14795130 (-) True sema3d
XM_039809927.1 mRNA upstream 41496 15098626 ~ 15105742 (-) True lmf2a
XM_039809926.1 mRNA upstream 48941 15106071 ~ 15131264 (-) True c2cd5
XM_039809932.1 mRNA upstream 82311 15139441 ~ 15158824 (-) False b4galnt3b
XM_039809931.1 mRNA upstream 82311 15139441 ~ 15158824 (-) True b4galnt3b
XM_039808567.1 mRNA upstream 106423 15163553 ~ 15172203 (-) True fkbp4
TU114449 other downstream 84403 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114408 other downstream 544649 14501960 ~ 14507201 (-) False LOC120563775
TU114145 other downstream 814898 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 1018635 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 1433954 13573831 ~ 13617896 (-) True mafb
TU114482 other upstream 8909 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 421852 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 457648 15514778 ~ 15544082 (-) True G85133
TU114908 other upstream 1382244 16439374 ~ 16440965 (-) True G85321
unassigned_transcript_374 other upstream 1707585 16764715 ~ 16764786 (-) True trnah-gug_10

Expression Profile