RNA id: XM_039808420.1


Basic Information

Item Value
RNA id XM_039808420.1
length 3720
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC120563916
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 15004301 ~ 15012816 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGGATACACAACATAAGGCGCTATCTGCTTTTTAATGTATGTGGgggggtcagtgtgtgtgtggccggtGGTATCTATTGTTGCGTCTATTGTTTAGTCCTAAAAGCCTCattttgcctttttgagggggcGTTTAGTGGCTTTTCAGGGCTTTGGGAATCAGAGATGCTGCTTTCATCACAAGTCAGGAGGATATGGAGACTGACAGACAAGCTGCAGAGGATTTGACAACCACAGAAAGAACTGATCCCTGAGGCCTGACTGAGCCCAGGAATGGCCCTCATTGAACTTAAATGGAGATTGTTTCAGGCCAAGGCTCTAGCCTGCTCACTGTTGTTTCTCCTGTGTCTGCACACAGCCACAGGAATGTCAGGGTGGGGTGGATGTTTGGATGGTCAGGATGTATATGCGACAATCAAAGAAAACAGCCACTCAGGAGAAGTTGTTGCTGAACTCATGGCTGAGACCACAATGGATGGGGTTCACTGGAGCCTGGATGGAAAGGATGCTGATTGGTTCTTCTTGGAGGGAAGAAGCATCCGGCTGAAAACATCAGCTGACAAGGTCCTTGACCGAGAGACTCAGGGTCCTGTTCTAATGGCTGACTTGTCATGTTATGAGGATGACACACTTCAGAGTGTGTACAGGATCATGGTGGAGATTCTCAATGAGAATGATAATTCCCCTGTGTTCGCAGAAGACACTGTCCAGTCTCTCATTATCAGTGAGCTAACTCCAGTGAACACTGTGGTGTTAACTGTCCAGGCCACAGATGCAGATAACGACAAGATCATTTACTCCATTGACCAGGCATCAcCTGATGCAGAGTACTTCAAGATTGATCTCCCCAACAGCGGAGAGGTGATCCTGTCCAAGCCTCTTGACTATGAGACCAAAACCCTGCTTACTATCATCATCCATGCTTCAGAAATGAGCACTGCTGAGCGCTTTAATACCAGCAGCAACATCACCATCACCGTCCTGGATGGAGATGACCAGTACCCACAATTCCTGCCCTGCATGCTACTTTTTCAGGATGAGAATAGTCGCATCTGCACCAGCCCTGTGTACACAGTCAAAGTCACAGAGGGGGAAGAGGACATTGTGTTGGACTTCTCTCCTGGTCCCATTCATGCAGTGGATGGAGACAGAGGCCTCAGCTCTGCCCTCAGCTATGCCATTCTCTCAGGAGACGATGATGGGCGTTTCCTGATGGACCCAGAAACGGGGGAGGTGAAACTGATTCGGGGGATTGGAGACAGACTCTCAACTCCAGAGCTGCATCTACAGGTCATGGCATATCAGGACGACGACCCCAGAAAATATTCTGTTGCTACAGTGTTGGTCCGAGTTCTGGCTGTGAACAAGTTTTATCCACAGTTTGACAGGGTTGAATATCAAGGCTTTGTAACTGCTGGAAATAGCCCCGCCTCTCTGGTCTATACCTTTGGCAGCAAAGCGCTGATGTTACATGTACAAGATCAAGACTTTCACCATGGTTTCAATCCCATGATCCACTTCACCTTCAGTCCTACATCCAATCACACAGACATCTACCAGATCACACAGGAGGGTCTTCTGATCGCTAGGACCAATAAACTTCAAGcaaaacagaaacacattcTAGAGGTAACGGCTATAGACCAGGACTCAGGTGATGCTACCTTTGCTACTGTAGTGGTGGAGGTGTTATTTGAAGGACAATCAATCCCTAatagtccactgggagatgaGCGTCCGATAAGCTGCACTGTGGGCAAAGCGTTGTTTCTGAGCATGGTGTTCATGACTGTACTTGGATGTACCCTGTCTATGGCGATATGGCTGAAGAAGAAACACAAAGGAAAGAGGGACCCACTGCAGAGAGGCTGTGTGGCCCAGGGCAAACACCCCAATGTGAGTTTACGGTGGTTCCAACTGGTCAGTCACAATAGCAGCACGACGAACACAGAGGAAGCACCATACAACAATGAAGAATATGGAAACTGCAATCCTTCCTTCAGCTTCTCAGACAATCCTGGCATCTACACCCACCAAAACCTCCCCCCCTGCCGAGGACCCCTTCCACCCAGAACAACCGCTGCACCCGACACCAGCTTCATCCCCAATGAAACTGTGCCTAGCCCTGTGATCTTCAATAATAATGTTTCTACACCAAACAAAATCTCCTCCAGTTCTCACCCAGCCACTGTGAAGATGAGCCCCATACGTATGGTTCAAAATGCTGCTCCACCCGAAGAAAACCCTGGCTCACCAAATGATACATCTCTTGACCATCCTGAGGCACAACCTGACACCAGTCCTAGTCCTGGATCCCCTGGTGACGCTGACACTCCACCGTTCACCTGTCCTGATTTACAAACTACAGAAACAACAACCAATGATGACCCGGCTGACTCTGCTGACCCTGTCACCAGCCCCTCCTCTCAATCCAGCATTCCTTGCAGTCATACCCGTATTGCTTCAGCAGAAATAGACAAACCCTTCCGCAAACCTCGTGTGAAGACCCCCCCAAATGCACCCCTACTGTCCTCACCCGCCCCAGAGCATGTGTCTTTAAAGGCCACACTTGTACACATAGATACGTCTCCTCTTGATACACCTCCAGTAACACCAGAGCGAACATCTATGACTCAAAGCACAGAGGTAGACCAACCCTCCACATCACTGGACCAAACAGAGCAATCAGAGCTGCCGGGTGGGTCTGCAGATGCCGAAAGTACATCTGGGGACAGGAGGCCCTCGACGAACTCGGGAAACGAGCAGGATGGCCGTGGGGCCGGGGGTTTGGATGATGATGGTTTTCTGGGAGATGAAGATGCAGACAAGAACAGTGAGGATGACGATGAGTTAGCGTCAGACGAAGAAGAGCTGCTTAGAGTGATGGCTCGTTGTAATCCCATGTTTATCACATTTACTACTAAGTGAGGTCACTATAATATTGTGTGAACTGAGAGTGACGGGGCAGACGATGAGAAGGTAAGCTGAAGATGGATGACGGAGGCCGGACACGTCATCGAGCAAGAAAGAAACGCTACAGTGTGGTTCTGCTGTACTGTAGGAACTAATGAGGCAAAGACAGAATACATATCTATATGTAAACATAGACATTTACACAATTACAACACATAATGTTGTTCCATTGCGTATACGGTATGACAGGAATGAGTGACCTTGAGTGCAcaatgcagttaaaaaaaaaaaaaaactcttttaaatcaaacttgTCAGTATAaattatgaatggtttcatcAAGGATACAACATGCTCATTCATTGCAAAGTTAGTATAAGTAGAACAGCCTGAATGAATCAGTAATCAAATACATTGTCTGTGAATGTCTACAAATGATAATGagactgtgtgttttttttttttaaaaaaggtaaaTGCACATTAAATGAAAACTGTTGCACTTCTATCTATGGGAGTAAAGTTCCAGGCAGGCAGAATATATGACCACGGTCATCACATAAATCTGTTAAATAGCTGCGGAGtactactgtatgtttaaaacTCTCACATAGTGTACctcttttaaataattgttttgttatGCCTACTCTACAAGCtgcctcagttttttctttcaacatgaGTTAAGTTATTGTCTAAAGTGATTATAAATCAGTTTTGGTGGTGAATAAGGAGAAGTTAAACTGCTTCATTGAAGCTCCTAAAtggcaaattaaaaagaaagctgccaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114375 lncRNA downstream 48894 14954128 ~ 14955407 (-) True G84948
TU114376 lncRNA downstream 48894 14954128 ~ 14955407 (-) False G84948
TU114433 lncRNA downstream 152278 14851720 ~ 14852023 (-) True G84971
XR_005640144.1 lncRNA downstream 196233 14807411 ~ 14808068 (-) True LOC120564774
TU114412 lncRNA downstream 437032 14558458 ~ 14567269 (-) True G84960
TU114472 lncRNA upstream 44909 15057725 ~ 15057929 (-) True G85007
TU114476 lncRNA upstream 49795 15062611 ~ 15063137 (-) True G85011
TU114507 lncRNA upstream 165524 15178340 ~ 15179173 (-) True G85027
TU114585 lncRNA upstream 349021 15361837 ~ 15363425 (-) True G85084
XR_005639985.1 lncRNA upstream 440393 15453209 ~ 15455514 (-) True LOC120563611
XM_039808419.1 mRNA downstream 13787 14973281 ~ 14990514 (-) True LOC120563915
XM_039808185.1 mRNA downstream 36518 14961860 ~ 14967783 (-) True si:ch1073-390k14.1
XM_039808414.1 mRNA downstream 85025 14903173 ~ 14919276 (-) True elapor2a
XM_039809864.1 mRNA downstream 209171 14757979 ~ 14795130 (-) True sema3d
XM_039809865.1 mRNA downstream 209172 14757979 ~ 14795129 (-) False sema3d
XM_039808233.1 mRNA upstream 39034 15051850 ~ 15057130 (-) True dnaja2b
XM_039809927.1 mRNA upstream 85810 15098626 ~ 15105742 (-) True lmf2a
XM_039809926.1 mRNA upstream 93255 15106071 ~ 15131264 (-) True c2cd5
XM_039809932.1 mRNA upstream 126625 15139441 ~ 15158824 (-) False b4galnt3b
XM_039809931.1 mRNA upstream 126625 15139441 ~ 15158824 (-) True b4galnt3b
TU114449 other downstream 36854 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114408 other downstream 497100 14501960 ~ 14507201 (-) False LOC120563775
TU114145 other downstream 767349 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 971086 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 1386405 13573831 ~ 13617896 (-) True mafb
TU114482 other upstream 53223 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 466166 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 501962 15514778 ~ 15544082 (-) True G85133
TU114908 other upstream 1426558 16439374 ~ 16440965 (-) True G85321
unassigned_transcript_374 other upstream 1751899 16764715 ~ 16764786 (-) True trnah-gug_10

Expression Profile