RNA id: XM_039808434.1


Basic Information

Item Value
RNA id XM_039808434.1
length 4683
RNA type mRNA
GC content 0.50
exon number 23
gene id polg
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 23927428 ~ 23937460 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGGGTTGACATCTATGGTTGACATGCTTAGTTGCTGTAAGAACCTCATTTGTTGTGGAGTGATTTAACATATATTTTGGTTGATTACTTTAACGTTATACCTCACAATACATTTCGGCTCTAGTGTGAAGTCCTCATGAGGTGATGCTGCATGTGTTGCGCTGTCCTTCACAGAGGACTCTCATCTCTCTACAATGGAGGTGTTTACGCTCCCTCTACTCCACCAAGCCTCACTCTCTTCAGGGCGAGGTCTCCACAGAGACCCGCCTGAACCCCCTTAACATTCAGATGCTGTCAAAGAACCTCCACGACCAGATCTTTGGGGTGCTGGAACCAGAGTACAAAGAGGATGATGTGGAGCGCAGCATTAGGCACCTGCAGAAACATCATCTGTGGGGAAAGGAAACTTCACTGTTGCCTGAAGTGGAGCTGAAGCTTCCCCAAATGTATGGCAAAAATATTGATGAGCACTTTCGTGTCTTGGCCCAGAAGCAGAGTCTTCCCTACCTCGAGGCTGCCACCAAGCTGCAGCTGGCTGAGCTCCCTCCCATGCCACAGGAATGGAGCTGGGAGGTTGGATGGACACGCTATGGGCCCAATGGGGAGAGTCAGAAGGTTGATTTTCCAGAGGAGTCGGCACTGGTGTTTGATGTGGAGGTGTGCATAACAGAGGGACAGTGTCCCACACTGGCTGCTGCTGTGTCTCCCACCAACTGGTACTCCTGGTGCAGTAAGCGTCTGATTGAAGAGCGGTACTCCTGGTCAAACCAGTTGACCCTAGCTGACCTCATCCCCTTGGAGACCCCTATCAACTCTGCCCGCCCACCTGGGGGACAGTGGAAGGAGAGGCTCATAGTAGGCCATAATGTCAGTTTTGACCGATCTTACATTAAGGAGCAATACTTACTAAAGGGTTCTAAGGTACGCTTCATGGACACCATGAGCCTTCACATGGCCATCTCTGGGCTGACTGGGTTCCAGCGCACACTGTGGATGGCCAATAAGCTGGGTAAAAGGAGGGGTCTTCAGGAGGTCAAGGAACACATTAAAAAAGCTGGACAGAAAAGGGAGGGTCCAACGatTGGCTCCTGGGACTGGGTTAATATTAGCAGCATTAATAACCTGGCTGATGTCCATGCTCTGTATGTGGGAGGGCCGCCACTGCAGAAGGAGGCCAGAGAGACGTTTGTGAAGGGCAGCATCATGGATGTCAGGAACAACTTCCAGGAGTTAATGCAGTATTGCGCCATGGATGTAGAGGCCACACATCAAGTCTTCACAGAACAGCTTCCCCTCTTCATGGAGAGGTGTCCTCATCCAGTGACGTTTGCAGGAATGCTGGAGATGGGTGTGAGCTACCTTCCTGTCAATCAAAACTGGGGGCGTTACCTGGAAGATTCTCAGGACATTTACGAAGAGCTTCAAAAAGAGATGAAGAAGTCTCTGATGACTCTAGCAGACGATGCCTGCCAGCTGCTGCAGGATGACCGatACAAAGAAGACCCCTGGCTTTGGGATCTTGAGTGGGATGTGCAGGAGTTCAAGCTGAAGAAAGTAGCAGGCAGCAAGAAGAAACACTccaaaaaagcagcagaaacacAAGCTGCTACTCCTCTTCCAGACTGGGAAGAAGACCCAGGTCCACCCTCTGAGGAGCAGATGGCTGGTCCTTGCCCCGGCAGGCTGGCTGTGGAGAAGCTGAAGGAAACGGTGAATCGACTTCCTAAGAGAAGGCAACATCTGCCTGGACATCCAGGGTGGTATCGTAAGCTGTGTGAGAAGATGTCTGAGGAGGACAGCTGGTCACCTGGAGCCAACCTCATCAGTCTACAGATGAGAGTGACTCCTAAGCTGATGGGCCTGACGTGGGACGGTTTCCCCCTGCATTACACAGAGAAGCATGGGTGGGGCTACCTGGTACCCGGACGCAGGGATAACCTGGTATCTGAGGAGGAAAGTACAGGGCCTGTGTGCCCACACAGAGCTATTGAGAGTGTTTACAGAGAGTATTGTGAGCAGAAGAGTAAAGTGCGGCCTGAATATCTGGACTGCAACCCTTCAGAGGACCTCATGTTGACAGACAGCACAGTGTGGGCAAAGGTGGAGGAGTTAGGTTCCCTGGAGAGTCTGACAGAGGAAAATGGAGTTAGAATGACGAAAAATGGGGAGAAGAAGAACAACCTGTCTCAAGATCCACATTATGTCCCAGAGAAGAGTCACTGCCATTATCACCATGGAAATGGCCCCTACAACGATGTAGATTTCCCAGGGTGCTGGTTTTTCAAATTACCTCATAAGGATGGTAATCAAAACAATGTTGGCAGTCCTTTTTCAAAGGACTTCCTGTCCAAGATGGAGGACGGTACTCTCAGGGCAGGACATGGTGGAACCAACGCTACACGAGCCCTGGAGATCAACAAAATGATGTCCTTCTGGAGGAATGCCCACAAACGTATAAGCTCTCAGATGGTGCTGTGGCTGCGAAAGGGAGAGCTTCCTCGTATTGTCAGCAGACACAAAGAGTTTGATGAAGAGGGCCAGTATGGTGCCATATTACCTCAGGTTATCACCGCTGGAACAGTCACACGTAGGGCTGTGGAGCCCACGTGGCTGACAGCCAGTAATGCACGGCGGGATCGGGTGGGCAGTGAGCTGAAGGCCATGGTGCAGGTACCACCTGGATATCACCTGGTGGGAGCAGATGTAGACTCTCAAGAGTTGTGGATTGCTGCTGTGCTCGGAGAGGCTCACTTTGCTGGCATTCACGGTTGCACAGCGTTTGGCTGGATGACCCTACAGGGAAAGAAGAGTCAGGGCACTGACCTGCACAGCCGCACTGCCGATTCTGTGGGCATCAGCCGAGAGCATGCCAAGGTGTTCAACTATGGACGCATTTACGGTGCAGGACAACCCTTTGCTGAGAGGCTGCTAATGCAGTTCAACCACCGCCTCGGTCAGACAGAAGCTGCTAGAAAGGCCAAGCAGATGTACGCCTTAACAAAGGGCATACGCAGATACCAATTGTCAGAGGAAGGGGAGTGGCTGGTCAACGAACTGGGTATAGAGGTGGAGAAGGAAGAAAATGGAAGTGTCACCCTGCCGGAGTTGCGGAGGATCACTAGACTGGTGTCACAGTGCTCTCGTCGGAAGAGGTGGGATTTGGTCAAGAAACGCCTGTGGGCTGGAGGTACAGAGTCGGATATGTTCAACAAGCTGGAGAGCATTGCTCATTCCGCCCAGCCAGCCACTCCTGTTCTAGGCTGCAGGATTAGCAGAGCGCTGGAGCCCAAGGCAGTTAAGGATGAGTTCATCACAAGCAGAGTGAACTGGGTGGTCCAGAGCTCTGCAGTGGACTACCTACACCTGATGCTGGTGGCCATGAAGTGGCTCTTTGAGGAGCACGACATCGACGGCCGTTTCTGCATCAGCATCCACGATGAGGTGCGGTACCATGTTCGCAGCGAAGACCGTTACCGAGCAGCGCTGGCACTTCAGATCACAAACTTGCTAACAAGGAGTGTGTTCGCCCATGCGTTAGGCATGCAGGACCTTCCCCAGTCTGTAGCTTTCTTCAGTGCAGTTGACGTTGACCAGTGTCTGAGGAAGGAGGTCACCATGAACTGTGTGACCCCCTCCAACCCCACAGGTCTGGAAAGAAGATACGGCCTACCACCTGGTGAGGCCTTGGACATATACCAAATCATTGACATCACCAAAGGCTCTCTGAAGAAAGGAAGATAGCACTTTGTGGGCAAAGCGACTGTTATTCAGAGCAGCTGTTCAGCAGTTCAAGATAGTGAAGAATCTGGAGAAGTGTTTATCGAACAAAGGAACAGAGGCTTCGCTCACtgttttctcttcttctgtttGGGTTCGTGTGTCTCCTCTACatcctgtgtctctgtggtctGAAAGGAATGGAAGAAGAAACACAGTGAGAGCTCAGCCATCACAGGACTAGTGTGTTCAGAGCACTTCAATGCAGAACGGATGCATTTAAAACATCACAAGGGAAATATATTTGAACAATTAGCTCAATCTGCATAGTTAAAACAACTCTTCTTTATTGAATAATGTAATCACGtaaaaggaggagaagaaataCAATTGCACTGTGAATGTGGAAGGAAAGATGGAGCAGACCTTTGGAGCTGCTAATTACGGTATGAGATTGCACTTACCTCCTGACTGTCGTCCTGTTCCTGCATGGCTGCGTCCAGAGAAGCAGCGTTGATGCGGAAATCTCTTGAGGTGCTCAGCTTCATGTACTGCATCAGATTTACCTGGACAAACATACAGGTGTTGGTAACAAGTATGAGTAGGAGTAGCCTAACTGATAACCCAGCACCAACAGGGAGCTTTCTGTATTTTGCAAGTCTCTTTATGTATTCTGACAGTCCTATTTTGTCAACTAcctcaaccaatcacattcacacataccTTTGACTTCTTTGAGAGTGTAATGAGGTATTTCTCGTACTGCTCAATACCGAAGACCACGTTAGGGATGGCTTTTGTCTCACGCAGGAGTTTTGCctgccgagagagagagaaaaagaacagaTCTAGATTAGCAAGTTCTGAATGGATTCAAAATCCAATTTGTTTGAGGCTCAAATGTTTTTAGTtgtacagtgtataatttttttttatatatttataataaagaTAAACAAAAGTAAA

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0005760 gamma DNA polymerase complex cellular_component
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02332 POLG; DNA polymerase gamma 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118056 lncRNA downstream 189923 23680748 ~ 23737505 (-) True G87614
TU118029 lncRNA downstream 297143 23629726 ~ 23630285 (-) True G87596
TU117898 lncRNA downstream 509575 23415763 ~ 23417853 (-) False LOC120564579
TU117845 lncRNA downstream 688896 23231238 ~ 23238532 (-) True G87469
TU117844 lncRNA downstream 702787 23198588 ~ 23224641 (-) True LOC120563856
TU118160 lncRNA upstream 100485 24037884 ~ 24039901 (-) True G87695
TU118158 lncRNA upstream 105059 24042458 ~ 24043739 (-) True G87693
TU118202 lncRNA upstream 421594 24358993 ~ 24359284 (-) True G87733
TU118217 lncRNA upstream 646959 24584358 ~ 24584608 (-) True G87748
TU118224 lncRNA upstream 655962 24593361 ~ 24593577 (-) True G87755
XM_039808436.1 mRNA downstream 15610 23909169 ~ 23911818 (-) True LOC120563922
XM_039807594.1 mRNA downstream 22631 23900293 ~ 23904797 (-) True LOC120563437
XM_039809456.1 mRNA downstream 33832 23880291 ~ 23893596 (-) True LOC120564460
XM_039809960.1 mRNA downstream 195131 23699160 ~ 23732297 (-) False ptdss2
XM_039809882.1 mRNA upstream 26906 23964305 ~ 23974244 (-) True rhcgb
XM_039807510.1 mRNA upstream 48967 23986366 ~ 23988531 (-) True gdpgp1
XM_039809025.1 mRNA upstream 68169 24005568 ~ 24008355 (-) False LOC120564204
XM_039809024.1 mRNA upstream 68169 24005568 ~ 24008355 (-) True LOC120564204
XM_039809023.1 mRNA upstream 71037 24008436 ~ 24016140 (-) True unc45a
XR_005640032.1 other downstream 11226 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other downstream 11226 23909169 ~ 23916202 (-) False LOC120563922
unassigned_transcript_380 other downstream 11522 23915834 ~ 23915906 (-) True trnar-acg_18
unassigned_transcript_379 other downstream 22255 23905102 ~ 23905173 (-) True trnam-cau_7
TU118073 other downstream 186238 23738982 ~ 23741190 (-) True G87624
TU118279 other upstream 1127353 25064752 ~ 25065488 (-) True G87803
TU118402 other upstream 1658954 25596353 ~ 25596761 (-) True G87897
TU118702 other upstream 2736444 26673843 ~ 26674883 (-) False ptprjb.1
TU118864 other upstream 3075838 27013237 ~ 27014411 (-) True G88249
TU118971 other upstream 3286653 27224052 ~ 27228966 (-) False zgc:153031

Expression Profile