RNA id: XM_039808477.1


Basic Information

Item Value
RNA id XM_039808477.1
length 2834
RNA type mRNA
GC content 0.46
exon number 18
gene id zgc:136858
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 21277459 ~ 21284740 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATCCTCACAATGGCTGAGTTGGACATGGAGTGACAGAGAACACACTGCAGGGTGTGATGCAACTGGGGAGCCTATTTGTTTGGTACTTAAAGAAGCTGAGGGTTTCCCTCAAAATCTGAACAGAATGAGGATGCTAAAGAGAGCCTCTGCACTCATCCTGAGAAGAGGGATCACAACTTATCAGAGCAGATTGTGCAAAAATGACAGCCTCTTCAGAGTTCATCCATCTGTATCTCAGGCGCTGGCAGAAAACAAACCAGTGGTGGCACTTGAGAGTACTATTATCACACATGGCATGCCCTATCCACACAACCTGAGCACAGCAAAGGAGGTGGAGGCAATAGTGAGAGCTGAAGGAGCCACCCCAGCCACGGTCGGAGTGATCGAGGGTGAAGTCCATGTTGGTCTGTCCTCAGAGGTGCTCGACCACCTCGCCCGCTGCAAGAGCTCCCTGAAGGTGTCCCGTCGTGATCTGCCCTACGTCATCAGCAAAGGGCTCTCTGGGGGAACAACAGTGTCAGCCACTATGATAGCAGCACACCGAGCTGGCATCCCTGTGTTCGTCACAGGGGGCATCGGAGGAGTtcacagagacggagagaacAGTCTGGACATCAGTGCAGATCTGACCGAGCTCGGCAGGACTCCCATTGCAGTGGTCTCTGCTGGTGTTAAGTCTATTCTGGACATCGGTCGGACCCTGGAGTTCCTTGAGACGCAGGGTGTCTGTGTAGCCACTTATGGAGCGTTGAAGAATTTCCCAGCCTTCTTCTCTCCACGAAGTGGATTCACTTCTCCATACCAAGTCTGCAATCCTGAGGAAGCTGCAAAACTCATTGCAAGCACTCTGTCACTGGGTCTCCAAAGTGGTGTACTGTTAGCGGTCCCCATCGCAGAGGAGCATGCAGCAACCGGTCAGCAGATAGAGGAAGCCATACAGGCGGCGGTAACAGAGGCAAGTGCTAAAGGTATAACAGGAAGAGACGTGACGCCGTTCATTCTTCAAAAGGTCAATGAGCTGACTGAAGGAAAGTCCCTTCAGGCCAACATTGCTCTCATTCATAACAATGCTAAAGTTGGCAGTCAGATAGCCTGTGCACTGTCAAAACAAATGACTGAAAGAAAgttaaaagaaaagactcatcATCATGGAAAACACTCAGAATCAGATATTGTGAGTATAAACACGATGGTCTTGTTTAGTCAAAGATTGGCACAATACAGTACCCACAAGGCTGTTCTTTTACAGGTTGTCATCGGaggaataaatgttgattttaTTGCTAAAGGGAAGACAAAAACACTTCATTTTGGACAGACCAACCCAGGAAGTGTCTGTCAGTCATTTGGTGGCGTAGGACGGAACATTGCTGACTCTCTGAGTCGATTAGGCATTAGCCTCCTGTTCATCTCAGCTACTGGAGCTGATTCACACAGCGAAGCAGTGTTGAACTATTGTAAACATATGAACACAAGTGGTGTGGCCAGGCTCGAAGAGCAAAGCACAGCAACTTACTGTGCTGTTATCACTGAGAGTGGAGAACTGAGTCTTGGATTGGGAGACATGGACATTCATCAGCAGATCACAGAGCAATATGTGTCACAGTTTGAGAAGCAGCTTTCATCAGCCACTCTTGTGTGTCTCGACGGAAACATTCCCATCTCCACCATCGACTATGTTTGCTCTattgcaaaaaaacacaacataaatgTTTGGTATGAGCCAACGGATTCAGAAAAGGCTTGTAAGCCTTTCCTGTCAGACGCCTGGAAGTCTCTGTCCTATTCATCTCCAAACCTGGCAGAGTTGTGCACCATGAACAAAACACTGGGTATCCCAACACCTGAAGTGCTGCCGAGCTCTCTTGAGGAGGTGCTGAGTGTTGCTGTGGCTCTCTCACGCCCCCTACTGGAGCATCTCCACTGCCTGGTGGTGACTCTGGGGGCTAGTGGAGTGCTGGTGTGCGGAGAGTATGATGCAGGCTCGGTCAATCTGCAGCCaagaaaacagaaaaggAGGAGGAGGCTTTGTGCTGTCCACTACCCAGCACTGACTGTGACAGCAGAGGAGACAATGAATGTGTCTGGAGCAGGAGATAGTCTGGCAGGTGCTTTAATGGCTGGGATTCTCCAGCGGCGAGACACAGACAGCTGTGTTCGGATGGGGCTCCTGGCTGCACGGTTGTCCCTGGCGTCACCGCACCCCATCGCCCCCACACTCACCTTAGACTCTGTGGATCCCAACAAAGTCCAGACTCACTGGCCCAAACCCAGCTTCATGTGGATAgcttaaacatatttttaaataattttgaagCATTGGTTCTATTATGCATTGGCttgtttattttatcatttttagcCTTAATATTTGTGATTGGATTCttgaaaaaaacagcatgtaAAAAAGTGAGTGAGTAAATGAATGTAAGCAGATGACGCGGTTTTAATAAAATCATTTAATCcaaattttatttcataatgaaaTCAATATCTATAATAattgataaataaatgaactatACCTTTCTTAAGTTCATGATTGCAACTCCTTGATTGCAAGATGTTTTGATTTCTCATAATAAAAGAAGGTACATTATAacagcagtggtggaggaagtactcgGGTCCTTTTCTAgtaaaatactccattacaaaaTTGTATAGGATTATTCTGCTGCTGGTCAAGGTGGGGCTCACTTTAACTACTTATTGTTTCTTATTGCTACTTATTAATTACTAAACAATATTTCCCACtgaaatgcagtggagtaaGTGCATATAGTCACTatttatcactaaaggaggtaACACGATGGAGATTGAGCCCTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function

KEGG:

id description
K16330 K16330; pseudouridylate synthase / pseudouridine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117244 lncRNA downstream 25700 21245010 ~ 21251759 (-) True G87030
XR_005639947.1 lncRNA downstream 130946 21140507 ~ 21146513 (-) True LOC120563411
TU117182 lncRNA downstream 174080 21102630 ~ 21103379 (-) True G86976
TU117040 lncRNA downstream 368869 20908389 ~ 20908590 (-) True G86853
TU116909 lncRNA downstream 577822 20698815 ~ 20699637 (-) True G86761
TU117338 lncRNA upstream 85584 21369563 ~ 21370658 (-) False dnajb9a
TU117350 lncRNA upstream 178726 21462705 ~ 21466246 (-) True G87107
TU117371 lncRNA upstream 202553 21486532 ~ 21512528 (-) True G87120
TU117376 lncRNA upstream 262679 21546658 ~ 21549859 (-) True G87123
TU117411 lncRNA upstream 440944 21724923 ~ 21725658 (-) True G87148
XM_039809174.1 mRNA downstream 561 21263991 ~ 21276898 (-) True cnot4a
XM_039809625.1 mRNA downstream 87852 21185466 ~ 21189607 (-) True tmpob
XM_039809806.1 mRNA downstream 93576 21175590 ~ 21183883 (-) False LOC120564647
XM_039809807.1 mRNA downstream 93576 21175590 ~ 21183883 (-) True LOC120564647
XM_039809808.1 mRNA downstream 95199 21175590 ~ 21182260 (-) False LOC120564647
XM_039808481.1 mRNA upstream 394 21284373 ~ 21297599 (-) False LOC120563940
XM_039808482.1 mRNA upstream 394 21284373 ~ 21292343 (-) False LOC120563940
XM_039808480.1 mRNA upstream 394 21284373 ~ 21289894 (-) False LOC120563940
XM_039808484.1 mRNA upstream 394 21284373 ~ 21289894 (-) False LOC120563940
XM_039808479.1 mRNA upstream 394 21284373 ~ 21289893 (-) False LOC120563940
TU117029 other downstream 397821 20877711 ~ 20879638 (-) False LOC120563850
XR_005640056.1 other downstream 448856 20806882 ~ 20828603 (-) False LOC120564033
TU116763 other downstream 1018200 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 1594542 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 1705537 19570302 ~ 19571922 (-) False cep152
TU117396 other upstream 429063 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 451027 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 451027 21735006 ~ 21739328 (-) False LOC120564778
XR_005639990.1 other upstream 1405182 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other upstream 1407069 22691048 ~ 22706196 (-) False parvg