RNA id: XM_039808480.1


Basic Information

Item Value
RNA id XM_039808480.1
length 2892
RNA type mRNA
GC content 0.41
exon number 12
gene id LOC120563940
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 21284373 ~ 21297599 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AcatgaaataaatcacattGGTTGAGTTTAGATCACAGTGAGCTTTCTCTGTGTTCGTTCAAGCAAACCATTCAACCATCTTTCTAAATGGAGTTGATTATTGTTCTCGTTTACTTGACAGGTTTTCAATCTTTTCCACCAGTGTTGTGTAGCTACACCAGAATGATCCActttccttttttctgtttttgtttgccTGCTGGACTCAGAGTGTCATCTACTCTTAGGATTCTGGACAAGCATCCTGACTGCAACCAACAGGGTCTTGACAACTGCAAAATTAAATTGGATGATGAGCATGTGGGAGTCTGGAAGGACAAACACGGGCCTGTTGCTGTTGTGACTGTGACGTGGAAAATACAGTCTGATGCAAGTGTAGTAGCCCTTACTGGATCAGAAATAAATATTGTGGATCAAAGTACAAATCAAAGTATGTGTGTGCAGTATTCTTACAAACTCAGCCAACAGCAGAATCCAAACTATAATAAGTGGACGTTTTCCTTGGACGGAGTCGTGGTAGAGCCTGGGCATACATATATGGTGTCACTTTTAAATCTGCCAGAAACTAATATTGAGGACTACAGGGTTAGAAAGCAAATCACCATCCCAGGGTGCGGGGACAAGAAAATCGAAAAGGCCCAAATATGTCTGGAAAATGGAAGTCTATGGGATCCTCACATGACCACTGCTGTGTCTCTTAATAAGGAACGTAAAAGGTTTTCCATTGTTGTGGGTTTTGAGGCAGCACCATATTCTGAGAGATACCAAGTCTCCATACAGAGTCATGGTTTCTATTACTCAACTAATGTCTCGAAGGAAAACAGATCATCACTGAATGTGACATTTGAGTTTGGTTGGTGGCAGCTCTCacaatgtgaaatgtttttaatgATTCAGCCATTCTTTATTCGATGCAAGAATGACTGTAAATTCGAAACTAAAACAATCGATTTATGCCCAGatttatcttgtgacccACTGGAAGGGGTTCTGGCGCcagattaTCCACCACGGACTTTCATTATAAAAGCAACTGTGGGGCTGCTTTTCATTGGTGCTTGTCTTGCTTGTTTACTGTGGCGTGCCTCTCAGAAAGATCCTGTGAACACAGCGTCATCTGCTCCCAAACAACAACCAGAAGGTTTTCAAGTGCAAGCGAGAAAAAGAGTCCTCGTCATCTACTCCCTCGATCACCCTTTATACAAAACCATTGTCCTGAAGCTGTGTGCCTTCCTGGTGACCAAATGTGGTACTGAAGTGGTCCTGGATCTGTTTGACTCAACAAGACTGGGAGTGTTGGGAAGCATCCAGTGGTTGGACTGGCACAGAGAACAAATAGAAAGCTCTTCAGATAAGATACTTATTCTGTGCTCACGAGGAGTGCAAGCCAAATGGAGAGCCATGTGTGGTGACAAACAGGTTTTTCTGAGAGAGGACACCCGTTCACCTGTAGGTGACATGCTCAGTCCAGCCCTCTTCCTCATGATCCCCCATTTTATCCGATCTGCGTCATTTGAAAAGTACATAGTGGCTTACTTTGGTGATGTTTGTTCTGAAGAAGATGTTCCTTCACCTTTCAACATTACAGTAAGATACAAGCTGATGAAACAGTTTGAGGAGCTCTTTTTCAGAATCTTGGACACTGAGAAGCACGAGCCCGGCAAAATAAATCACATTGAAGGGCTTTCAGAGGACGAGTACCATCATTGTCCCTTAGGCAGAGCCCTGCGGGATGCCATAGAGGCTTTTCATGCACACCAGCTGGAGAATCCACAGTGGTTTGAAGATGAATTACTGGAAAGCTCAAATACCTCAGCTGAAATCTGTTACGATGCAGAAATAACCACAAACCTCATTACATATTCTGTCCCCGACTCGACCCATGTCGCCAATCATTTAAAGACACAAAAAAGTGATTTCAATGCAGACAAAACAGGACCTTACGTGACTGAAGAGTTTCAAATGTGCACCTCAGTTGAGTTCAACCCTCTTATTGCAGAGAACATGCAGGCAGCTTGATATGATTGCATTTTTGAGACATCAATGGAGATCCTCCCAACACTTTGATGAAACTATCAAAAGCAATCCATCAGTTATTCAATTTGATGTGACTCATGTTCTACAATCGTAGGAGCAACAGAAATCTGCTGAGAGAAATAACCAATGGATACAAACAGATATTAAACTCGTATTGGAGCAAGTAATCAGCAGATATGTGGACAATGAATGTAAAGACTTGGATGAATCTGTGTAACCTTTCTTCAACCACTTACCAGAtgtgaataaaaaagaaaatatgtggAGGTTTTGTGCAAATTTAGctaggtgttttttttacttcatttaTTTTACCATGTATCTGCTTGTCTTCATGTCATTTCTGCAGTATTTTTGCATATTGCGTTAATGTTAAATATCTCTTGCTTTCACTCAGCCAAATGCAGAGGTAGTTTAGACAACAGGGATCTGTGGTTGATGCTTTTGGTCTGTGTAAACAGACTTTGGGTCAAAGTTCAGCCTTCTGGGCAAAGTTTCTAGCATTTTGTTGCACTGGAGAAGGTAAGCAGTAAACCATGTTTGTGGGACGCTGTTTTGTATGATAATGAGCTGATTGAATGTAATGTGGTTTGGACTTTAATATTGCAAAGCATTGGCGTTTTTGATTAAACAATTGTAACACAGGTATATGGTCTCACTCCTACTGCAAAGATAGAGCATGTGAGCAGAAATGAATATTTGTTCTTAACTCCTTTAGACTGATGAAGCTTTTCAGATATTTTCATTGTGATTTGAATTGTTTGTTGACATGTCTCTGATCCTCTCAGTGTCATTGATGAGATAATAGATTAAATACAGTGTTACATTTCAATAAACAAAATCAGTTGTAAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117244 lncRNA downstream 32614 21245010 ~ 21251759 (-) True G87030
XR_005639947.1 lncRNA downstream 137860 21140507 ~ 21146513 (-) True LOC120563411
TU117182 lncRNA downstream 180994 21102630 ~ 21103379 (-) True G86976
TU117040 lncRNA downstream 375783 20908389 ~ 20908590 (-) True G86853
TU116909 lncRNA downstream 584736 20698815 ~ 20699637 (-) True G86761
TU117338 lncRNA upstream 79669 21369563 ~ 21370658 (-) False dnajb9a
TU117350 lncRNA upstream 172811 21462705 ~ 21466246 (-) True G87107
TU117371 lncRNA upstream 196638 21486532 ~ 21512528 (-) True G87120
TU117376 lncRNA upstream 256764 21546658 ~ 21549859 (-) True G87123
TU117411 lncRNA upstream 435029 21724923 ~ 21725658 (-) True G87148
XM_039808476.1 mRNA downstream 349 21277462 ~ 21284024 (-) False zgc:136858
XM_039808477.1 mRNA downstream 394 21277459 ~ 21283979 (-) True zgc:136858
XM_039809174.1 mRNA downstream 7475 21263991 ~ 21276898 (-) True cnot4a
XM_039809625.1 mRNA downstream 94766 21185466 ~ 21189607 (-) True tmpob
XM_039809808.1 mRNA downstream 102113 21175590 ~ 21182260 (-) False LOC120564647
XM_039809744.1 mRNA upstream 65686 21355580 ~ 21368976 (-) False dnm1l
XM_039809743.1 mRNA upstream 65686 21355580 ~ 21368976 (-) True dnm1l
XM_039809747.1 mRNA upstream 65686 21355580 ~ 21368975 (-) False dnm1l
XM_039809746.1 mRNA upstream 65686 21355580 ~ 21368975 (-) False dnm1l
XM_039809749.1 mRNA upstream 79637 21369531 ~ 21372509 (-) True dnajb9a
TU117029 other downstream 404735 20877711 ~ 20879638 (-) False LOC120563850
XR_005640056.1 other downstream 455770 20806882 ~ 20828603 (-) False LOC120564033
TU116763 other downstream 1025114 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 1601456 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 1712451 19570302 ~ 19571922 (-) False cep152
TU117396 other upstream 423148 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 445112 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 445112 21735006 ~ 21739328 (-) False LOC120564778
XR_005639990.1 other upstream 1399267 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other upstream 1401154 22691048 ~ 22706196 (-) False parvg

Expression Profile