RNA id: XM_039808527.1


Basic Information

Item Value
RNA id XM_039808527.1
length 1681
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC120563965
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 15234332 ~ 15237616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggtttGTTTTCAGTTCCAGGACACTGCACGGATACATCATGGCAGAGTTCGAAGGGCATCTGATTAAATCTGTCTTTCCTCTCGTCTTTTCCTCCTCAGTTACATCTCTCTGTTTCAGTTCATGCTAATGATGTTACATCACAGGTATCTGATGCCACGTGACACTCGTGTCTCCCATCAGGACTGAGGAGCACAAACAACAGAATCATTACAActaacacattttttaaatttcaggGCAATATTCTGTTTCTCTCTAGCACGTTCCTGAGGGGCCGTTAGAGGTTCTTATTTGCCCAGTGCAAATATATTTGTACCACTCATCAGTTTCTGTATTGATGACAGGCCATACTCCTGTTTGTGTTATGAAAGTCTTTCCCCTGCATCTCAGCTCCAGACATGCCTCCTCAGTTTCTCCACGCCAAGAAGTTGTCAGACTATGAGGTAGAGTTGTCGTGGCAACCACCACTTGAAGCAAATTCAGACATACTCTACTACATTGTCAGAGTTTGGAATGAAACGACTGAGCTGTGGCAGAATGTGACAGGGACATCAGTGGTTATTAATGTAGACTCAGAGAGTCGCTACAACGCTTCTGTCTCCAGCTGGAACAGACTGGGAGATGGAGGAGTGCTGATCTACATCAGCTTTAACACCATCAATGCAGAACCATTTGACCCCCCGCGGAATGTGACTTTTGCAAATGTGACCGCTTCCTCCGTCAACTTGCTGTGGCACCCGCCTGCTGAACCTAATGGAATCATTGTACACTACACCATTTACTACTCATATGACAACACTGTTGCTGAGCAGaGGGTTCCTATTTCAAACTTAGGTGCCCCTGCCTCTCCTGATTCAGCCCTCTCCTACACTCTGACTCGGCTGATTGGGGGCACAAACTACACCCTGTGGATGACCTCCAGCACAGCGCAGGGGGACGGAGGGGTTCAGAGCGAGCCACTAACCCTGTTCTTACCGGAGGACGCCGCTCCACTCTCAGCCAAGCACCGGATCTCCAGGGCACCTTGTCTCTCCCGCACAGCCAAGCCCCCCTGCTGGGCTcagacccccacacacacctggcCCCTCACATCCACTCATTCATCTTATGGATCTCTCAAGTGTTATCTCCCCTTTCCCCTTCAtctccctttttttcttctctgtgtACCATGCTTTATTTTCGGAGGGGCGGAGACGATGAACAGGATGAGTATTTACTCCTCAACCCCTTTCTTTCTCAAGGTTTCAGTTGTGCTAGTTTCTCTCTTAAATTCCTCTGTATGTCTCTGGATTGGCTGTTATTATTGTAGCAAACTGTTGTTGTGTCTGTTAACTGTGCTGTTTTACTTTGCTGTGTTTCTGCATTGTTAAAGTAATGTCATGCGGTATTGTTCTATTTGATGTGCTGTTGTTGATTTTGTTAATTGCAACAATGCTGCCAATGATTATGACGGTGCTTGTGAcagatgatgataatgatgttgatgatgatgatgatgactggTGTGCTGTTCATTTTCCCTCAAGTGTCGGAGTGTGTATAGTTGATTGATGTCCTAATTTACTGCCTCATAGTACAGTAAACTCACATCAAAATGCTCACAGTTTTCAACCAGTGTTGTCACTGGTAGTCAAAAATAGTAACACTATTCTTCTTGTTTCCCTCTTCAGTGCCAA

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114507 lncRNA downstream 55159 15178340 ~ 15179173 (-) True G85027
TU114476 lncRNA downstream 171195 15062611 ~ 15063137 (-) True G85011
TU114472 lncRNA downstream 176403 15057725 ~ 15057929 (-) True G85007
TU114375 lncRNA downstream 278925 14954128 ~ 14955407 (-) True G84948
TU114585 lncRNA upstream 124221 15361837 ~ 15363425 (-) True G85084
XR_005639985.1 lncRNA upstream 215593 15453209 ~ 15455514 (-) True LOC120563611
TU114626 lncRNA upstream 218039 15455655 ~ 15458913 (-) False G85121
TU114627 lncRNA upstream 218039 15455655 ~ 15458913 (-) True G85121
XR_005639984.1 lncRNA upstream 218224 15455840 ~ 15456554 (-) True LOC120563610
XM_039808566.1 mRNA downstream 44346 15182609 ~ 15189986 (-) False wash1
XM_039808565.1 mRNA downstream 44346 15182609 ~ 15189986 (-) True wash1
XM_039808567.1 mRNA downstream 62129 15163553 ~ 15172203 (-) True fkbp4
XM_039809932.1 mRNA downstream 75508 15139441 ~ 15158824 (-) False b4galnt3b
XM_039808613.1 mRNA upstream 24870 15262486 ~ 15291962 (-) False otogl
XM_039808612.1 mRNA upstream 24870 15262486 ~ 15291962 (-) True otogl
XM_039808619.1 mRNA upstream 61071 15298687 ~ 15304280 (-) True syt1b
XM_039808617.1 mRNA upstream 73261 15310877 ~ 15317845 (-) False cd9a
XM_039808618.1 mRNA upstream 73261 15310877 ~ 15316386 (-) True cd9a
TU114482 other downstream 160982 15066039 ~ 15073350 (-) True G85014
TU114449 other downstream 266885 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114408 other downstream 727131 14501960 ~ 14507201 (-) False LOC120563775
TU114145 other downstream 997380 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 1201117 14031104 ~ 14033215 (-) False zgc:77752
TU114636 other upstream 241366 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 277162 15514778 ~ 15544082 (-) True G85133
TU114908 other upstream 1201758 16439374 ~ 16440965 (-) True G85321
unassigned_transcript_374 other upstream 1527099 16764715 ~ 16764786 (-) True trnah-gug_10
TU115062 other upstream 1570440 16808056 ~ 16808416 (-) True G85435

Expression Profile