RNA id: XM_039808543.1



Basic Information


Item Value
RNA id XM_039808543.1
length 1189
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC120563974
representative False

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13204676 ~ 13209541 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TGTTGCCTTctactctccctctccttcagATCTTTGTTCATTCGCTCTGAGCTCTGACTGAGTGCAAACAGTCTCCAGAGCACAGCCAAAAACAAGCGGAGACACGTGGAAAAATAGAGCAGTGACTGGATTTATCCAAGGTGGACTTAAAGCtgaatttttttaaaggaaaaaagTGGTGTCCTGTCTACAGTTGAAGCTGAGTGGAGTCGCTATATACCCAACTGAGAGAAGAATACCAACTGACCTGAGTGCAGCCGGACAGGTTGAGGTGGATGAGATTGTGGCAACCCTTccctgtgttcagGTGTGCAGAGCCCATCAGGCTGAAAGGCATTAAGTTGAAGCAGATTGACCCCATATTACTTTGTAAGGAGAGAGACCCAACCAGCAACCGAACAGATCCCACAGACCCTGTAAAGCCCATACCAATTCGCATAAGACCAGATGCCACCACATTATGCCATACCTACCTTTTCCCCCAAATACAGGTGGACTGCCGTAAAAGAGGTCTAACCGAGGTGCCTACAGGTATTTCAGAGGATGTTGTTCACATTGATCTGTCCCATAATTCAATTCGTCATCTCAAAGCCAGAAATTTCCAAACAGCGAGGAGCCTCAGAACCCTTAACATCAGTCATAACAATATGGAGCACATTGACACAGCTTCCCTGTTTGGGCTGCTGCACCTTCGTGAGCTGGACCTGTCTGACAACAGCCTGCATTTTATCCAGTACGGAGTTCTTGAAGACCTTTACTTCCTGTCACAGCTAAAACTGGGAGGAAACCCCTGGGTGTGTGACTATAGCATCCACTACATGGTGTACTGGCTGCGTCTGCACCCAGGGGTGAGGCACTCTGGCCTGCTGTGTCACTCCCCTCCTGAACATACTGGGAAGAGTGTAGCGAAGTATGTGCATTCCTACAACGGAGAGTGTCCAAAGGACAGACAGCAAAGCAGAACAGATCCAGACCAATCAAACCCTGAACTATGGAATACACCAATGGAAGTGCAAggagagctggaggaggaggagctggagccGAGCCATTTGAGAGTACCGCAGAAATACCAGATCATCAGGCTGTCCTGACTCAAATGAAAATTTTACCTACAAATTTGACTTAATTTCATTCAATATCATAAAACCGTCTGTATCAGAtagagaaaatacatttttcagtgttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005640039.1 lncRNA downstream 3013 13200943 ~ 13201663 (-) True LOC120563976
TU113690 lncRNA downstream 10970 13193269 ~ 13193706 (-) True G84446
TU113600 lncRNA downstream 158647 12977962 ~ 13046029 (-) True G84378
TU113607 lncRNA downstream 164230 12991027 ~ 13040446 (-) True G84384
TU113597 lncRNA downstream 220616 12972389 ~ 12984060 (-) True G84376
TU113816 lncRNA upstream 25632 13235173 ~ 13235410 (-) True G84532
TU113817 lncRNA upstream 27110 13236651 ~ 13236861 (-) True G84533
TU113832 lncRNA upstream 37287 13246828 ~ 13249798 (-) False prr5a
TU113809 lncRNA upstream 61711 13271252 ~ 13272529 (-) True G84528
TU113825 lncRNA upstream 112641 13322182 ~ 13325258 (-) True G84536
XM_039809829.1 mRNA downstream 11932 13188477 ~ 13192744 (-) True armc10
XM_039809220.1 mRNA downstream 17094 13167318 ~ 13187582 (-) True LOC120564344
XM_039809640.1 mRNA downstream 38568 13159313 ~ 13166108 (-) True sinhcaf
XM_039809918.1 mRNA downstream 46580 13155411 ~ 13158096 (-) True kxd1
XM_039808101.1 mRNA downstream 51972 13147847 ~ 13152704 (-) True LOC120563727
XM_039808544.1 mRNA upstream 3268 13212809 ~ 13216422 (-) True fam185a
XM_039809925.1 mRNA upstream 8396 13217937 ~ 13225042 (-) False LOC120564726
XM_039809924.1 mRNA upstream 8396 13217937 ~ 13225042 (-) True LOC120564726
XM_039808534.1 mRNA upstream 34668 13244209 ~ 13246174 (-) True tmem60
XM_039809624.1 mRNA upstream 37535 13247076 ~ 13256093 (-) True prr5a
TU113260 other downstream 1060130 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1316278 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2541998 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2772532 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 3024679 10174824 ~ 10179997 (-) False tdg.2
TU113814 other upstream 21076 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 364290 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 821563 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 1013709 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1292419 14501960 ~ 14507201 (-) False LOC120563775

Expression Profile