RNA id: XM_039808551.1


Basic Information

Item Value
RNA id XM_039808551.1
length 1381
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC120563982
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13758290 ~ 13761333 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAAGTGTCTTGTTGCTGTTTTGGTCTTTGTGGTGCTCGCAGAGGGACTTAAAGTAAAGATCCCTCTGCAGAAGCACAAATCCATGCGTGAGACCCTGGGAGAGAAAGGGATCAAGATACCTTACCAGGATCCGGCTCTCAAGTACTACCCCGAACAGTTCGCCGGCTCTGCCAGCATGTACATCAATAACTACGCTGATACCACCTACTTTGGCGCCATCAGTATTGGAACACCCCCCCAGTCCCTCCAAGTGCTGTTTGACACCGGCTCTTCCAACCTGTGGGTGGACTCCACCTACTGTAACACTCAGGCCTGCAacgcacacacaaagtTCGACCCCCAGCAGTCGTCTACCTTCTCTGCCAATGGACAGAGTGTCTACCTACCCTATGGAGCTGGAAGCCTCTATGGACAGCTGGGATATGACACTGTCAATGTAGGCGGCATTGTGGTCACAAACCAGGAGATCGGTCTGAGCACACAGGAGCCTAGTAACCCCTTTCTGGCTGCCAAGTTTGATGGCATCCTCGGCCTGGCCTATCCAGGCATCTCAGCTGGAGGACAGACTCCTGTCATGGACAACATGATTTCTCAAGACCTGCTGAATGACGACTTATTTGCTTTCTACCTGTCCAGGGGAGGGCAGCAGGGCAGTGAGCTCTCTTTTGGAGGAGTGGACAACAGCATGTACCAGGGCCAGATCTACTGGACCCCTGTCACCTCTGAGACCTACTGGCAGATCGGCGTTCAAGGATTCCAGATCAATGGCCAAGAGACCAGCTGGTGCTCTCAGGGCTGCCAGTCCATTGTGGACACTGGAACCTCATCGCTGACCGCCCCAAGCCAGTTTATGGGTAACATCATGCAGGCCATTGGAGCTCAACAGAGTCAATATGGAATGTACATGGTGGACTGCAGCCAAATCAACAACCTGCCAACTCTCAGCTTTGTTATCAGCGGAACTGCCTTCCCTCTGCCTCCTTCTGCTTACATCGAACAGCAAAACCAGAATGGATACCAGTTCTGTTCAGTGAACATCAACCCCACCTACCTGCCCTCTCAGAATGGCCAGCCCCTGTGGATCTTTGGAGACGTGTTCCTCAGAGAGTACTACTCTGTCTATGACCGCACCAACAACCAAGTCGGCTTTGCATCAGCTGTCTAACTGTCGTCAGTGTAACCTAACCTGACCATAAACCTAATCAGATAAGATTTAAAAGTCTGTGTCCACTCAAACACATATATTGTCAAATAATATTGTTCTACATTTATTGTACATCCTCAAATTGGTAGATTCAATTggatttgaatattaaaaacgGAAAAATGTGTCCATAAAATTGCATCATCCTCAAGCAGAATAAATTTAAAATGCTCAC

Function

GO: NA

KEGG:

id description
K01377 PGC; gastricsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113923 lncRNA downstream 72821 13683824 ~ 13685469 (-) True G84597
TU113916 lncRNA downstream 113442 13644417 ~ 13644848 (-) True G84592
TU113907 lncRNA downstream 313678 13434739 ~ 13444612 (-) True G84585
TU113867 lncRNA downstream 373085 13325986 ~ 13385205 (-) False LOC120564547
TU113827 lncRNA downstream 434117 13322182 ~ 13324173 (-) False G84536
TU114089 lncRNA upstream 311300 14072633 ~ 14072948 (-) True G84719
XR_005640108.1 lncRNA upstream 461864 14223197 ~ 14232530 (-) False LOC120564470
TU114136 lncRNA upstream 461917 14223250 ~ 14236952 (-) True LOC120564470
TU114142 lncRNA upstream 461917 14223250 ~ 14236952 (-) False LOC120564470
TU114147 lncRNA upstream 476249 14237582 ~ 14238451 (-) True G84751
XM_039807983.1 mRNA downstream 18190 13727188 ~ 13740100 (-) False chkb
XM_039807982.1 mRNA downstream 21115 13727188 ~ 13737175 (-) True chkb
XM_039807980.1 mRNA downstream 31931 13722783 ~ 13726359 (-) True LOC120563649
XM_039807981.1 mRNA downstream 31933 13722783 ~ 13726357 (-) False LOC120563649
XM_039807977.1 mRNA downstream 35902 13709986 ~ 13722388 (-) True cpt1b
XM_039808550.1 mRNA upstream 20044 13781377 ~ 13785751 (-) False arsa
XM_039808549.1 mRNA upstream 20044 13781377 ~ 13785751 (-) True arsa
XM_039810069.1 mRNA upstream 260714 14022047 ~ 14027064 (-) True rabl2
XM_039809212.1 mRNA upstream 266565 14027898 ~ 14030995 (-) True odf3b
XM_039807392.1 mRNA upstream 269775 14031108 ~ 14037716 (-) True zgc:77752
TU113910 other downstream 140394 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 527195 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 1613744 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1869892 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 3095612 10644032 ~ 10662678 (-) False scamp2
TU114030 other upstream 269771 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 461917 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 740627 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 1205122 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 1304706 15066039 ~ 15073350 (-) True G85014

Expression Profile