RNA id: XM_039808562.1


Basic Information

Item Value
RNA id XM_039808562.1
length 3585
RNA type mRNA
GC content 0.47
exon number 12
gene id ppm1h
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 23503797 ~ 23537525 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCAAATCCACCGGCAGCAACCGGTTTGTCACATGACTAGCATGCAgccctgcctgcctgtgtgtctgtgtagctTTTATTTCCGCGTTCATCGAGGGAGCGCTGGGCTGAATGAGTTTTTACGGCCGCTGTGTGTCTACCTTTCACGCCGCGAAACTGCGTCGCCGTGTTGGGATCTGTCGGGCGGGGGGAAACTCACGCAATCGCATCGCCTGGACCCACGCTGCAGCAGGACCATGCTCACGCGGGTGAAATCGGCGGTGGCCAATTTTATGGGAGGTATGATGGCTGGTGGCTCCAACGGTGACCATCCCGGCGGTGGCTCGGATCTGCCGCTGAAATTTCCGTACAGCAGACCGGAGTTCTTGGGACTGTCGCCGGACGAGATAGAGTGCTCGGCGGACCACGTCGCGAGACCGATCCTCATACTGAAGGAGACCAAACGGCTGCCGTGGGCCACCGGCTACGCAGAGGTAATCAATGCAGGAAAGAGCACTTTAAATGAGGACCAGGCCTGCTGTGAGGTGCTGGTGGTCAAAAGGAGACCTGCAGGAAGCTCCACGCCCAACCGGACCCCGATGGTCCGCAGGAGGTCTTCCCTGCCCAATGGAGAGAGTTTGGGCCTCCGGGAGTGCTCACCCACCAGCACTTTACTCAGGCCCACCCAGAGCCTACAGGAAACTCGTTATCTTGAGATTGGTGGGTCATTCCAGGACAGCTCTGAAGACCTAACCTTCCACTACTGGGCGTTGTTTGATGGCCATGCTGGCTCTGGGGTGGCTGTAATGGCTTCCCGCCTTTTACATCACCACATCGCCATGCACCTTCAGGAGGTGGTGGAGATTGTCTGCACTCCAAACCTGCTGGCACCCACATGCCTCGGAGAGGAGCCTATCAATCACCACCTCACCTCGACATCCCAACGCGCCCTCACCAGGGCCGCCTCGCTCCGCGGCGCTGCAGGGGCTCCGGGCTCACCCAGCACCCCACCTACACGCTTCTTCACTGAGAAGAAAGTCTCACAAGAGAGCCTGGTGGTCGGAGCCATTGAGAATGCTTTCAAAGACATGGATGTGCACATAGAGAAGGAGAAGGCAGTCTACAACATCTCAGGTGGCTGCACTGCTCTGGTGGTTGTCTATTTGCTTGGGAAGCTCTACGTTGGGAACGCTGGGGACAGCAGGGCTATCATTATCCGGGCAGGAGAAGTCGTCCCCATGTCAGCAGAGTTCACACCGGAGTCAGAGAGACAGCGACTGCAGTTCCTGGCCTACATGCAGCCCCACTTATTAGGAAACGAGTTTACACATCTGGAATTCCCGAGGAGAGTCCAGAGAAAGGAAGTGGGGAAGAGGATGCTGTACCGTGACTTCACCATGTCGGGATGGGCGTATAAAACCATTGAGGACGATGACCTAAAGTTTCCCCTGATCTACGGCGAAGGAAAGAAGGCTCGTGTGTTGGCGACCATCGGGGTCACCAGAGGTCTCGGGGACCACAATCTCAAAGTGCACGACTCTAACATCTACATTAAGCCCTTCCTGTCCTGCTGCCCAGAGGTCAAGGTTTACCCTTTGGCACAGTGCGAGCATGGAGCTGATGACGTTCTGGTGCTGGGAACCGACGGTCTGTGGGACGTCCTCTCTAACCAGGAAGTAGCTGAAGCGGTCACCTGTTTCCTGGCAAACTGTGACCCCGACGACCAGCACAGGTACACAATGGCAGCTCAAGACCTCGTAATGAGAGCACGAGGGGTGCTGAAGGATCGAGGCTGGAGGATATCCAACGACAGATTAGGCTCCGGAGATGACATCTCTGTCTACATCATTCCCCTCATGTACGGCAACAAGCAGAACTAGCCAAGCTACGTAACTACAACCACTACCGAAACGTAATCCTGCCTTCTGCAACCCCCCTCATCCCTTATACTctttttaaaagtgctttaGTGTGGATGTCCTCCTCTGCTGAGGGATCCAAGATGTCTCTGGTCAGAAATGGGATTTTTGTCCAGGCTGTTTTCCCCATAATCATCCTCAAACAGGATGATCTCTTTTTGTCTGGTCCTTTTTTTATAGAAAAGAAACGTGAAAAGAGCTGTTGAAGagaactgtttgtttgttttttatttgatttttcttttctttttttatctcgAGGAAGCCATCATGAACCTTGTTGTTGGGCAATGCCTAAGGTTGAGAGCATAGCCTCTCATGGATGAGATGTTAATGTGCATCTCAGGATTGCAGTTACTAACTTAATGCACAATATTtataaatgtgaaaatgtaaatACTCCCAAAGCGTAAAACATTTGATAAGTGTGTTTGGTTGAACACCTgtacagtgtaaaaaaaaaaataaaaactaaccCGAAGACTGATGTcctgcatatacagtatgaatcATGCCTCCTCTGTTCCATGTATAGCTTTTAAATTAGCCACGTTCAGTCGTCTGCAAATGGTAGTCTGCTGTCCAAAGAAACATTTGTAAGCCTTCTCTAGACAGTATTTCAGCTTGTTCTCCTGATGCTGAAgttgctattttttttatatttgcacaCCTTGCATTGCAATACTGTActaattattaaatttttaaaGAAAACGATTTTctttggaaatgaaaaaaacacatcagtgtAGAATATACACTAACAGGAGAAGTTCCCTTCAGGATTTTGGTGTCAGCTACACATGACCCTGCTCCCATCATAGTATGAAATAGCCCagatttaagaagaaaaaaaacaaagatgtcTTTCTGTTGCACTCATTCGCCATCAGCCATCTACCTCATaatttctttctcctttttattgtattacGCATAACACATGTTGTCATTGTCCTTATTGAGTGGCTGTTTGTATGCTACATCAGGTGCATCATCGGTTGCTTCCATTAGTGCCATTATTCTGTTACATTGTTTGTGATTTGCTCCAGTACCTGcaagatttggaaaaaaaaatgttttcagaaaagcactgatggaaaaaaaaaataaaaaagaagcctCACAGGAAACTGTGATCGCTATAGGGTTGtaccaaatatatatttttttatacatatgCTCAAAAAAACCTTTGTCATGAGCTCATGTTTACCTTTCCTGAATATTGTCCCCATTAAGATAAACCCACCCTTATGAATAGCAGCTGCCACTGACAAAGAATTGCTCTGATTTTTAATGTCTCAGAAAACGGAGTAAAATCACTGCAGACAATTAAATAGACAACACTTACCTTATGTGTCTACAATCAATGCTGTTCCCTAATCGGTGGGTTTCCacattttagtttgtttagtTTTCAGTTTCTACTAATTGTGTGCAAATATTGTATCATAACTGCTGTACTAGTGGCTGAAGCTGGTGAAACATGGAACAGAGtaacttaatttaaatgtaaaaatgtaaataatgttTTCAGTGGATacttctctcctttcttttaCTGTGAGTGATGTACGTCTTACTGTAACAAAAGACGTACTTTGTACTGTTTTGGAAACAATGAACAGTGTAAAAATGGTTTAAATGCTCACTTTTCtgctctattaaaaaaaaatacacacaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K17503 PPM1H, ARHCL1; protein phosphatase 1H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117898 lncRNA downstream 85944 23415763 ~ 23417853 (-) False LOC120564579
TU117845 lncRNA downstream 265265 23231238 ~ 23238532 (-) True G87469
TU117844 lncRNA downstream 279156 23198588 ~ 23224641 (-) True LOC120563856
XR_005640017.1 lncRNA downstream 286659 23198572 ~ 23217138 (-) False LOC120563856
TU117838 lncRNA downstream 354453 23149119 ~ 23149344 (-) True G87464
TU118029 lncRNA upstream 92201 23629726 ~ 23630285 (-) True G87596
TU118056 lncRNA upstream 143223 23680748 ~ 23737505 (-) True G87614
TU118160 lncRNA upstream 500359 24037884 ~ 24039901 (-) True G87695
TU118158 lncRNA upstream 504933 24042458 ~ 24043739 (-) True G87693
TU118202 lncRNA upstream 821468 24358993 ~ 24359284 (-) True G87733
XM_039809707.1 mRNA downstream 81340 23411510 ~ 23422457 (-) True LOC120564579
XM_039808895.1 mRNA downstream 96128 23376581 ~ 23407669 (-) False fbln1
XM_039808896.1 mRNA downstream 96128 23391490 ~ 23407669 (-) True fbln1
XM_039807847.1 mRNA downstream 312366 23162777 ~ 23191431 (-) False pparab
XM_039807849.1 mRNA downstream 322231 23162777 ~ 23181566 (-) False pparab
XM_039809914.1 mRNA upstream 14328 23551853 ~ 23556076 (-) True avpr1aa
XM_039807477.1 mRNA upstream 40053 23577578 ~ 23584567 (-) False LOC120563353
XM_039807479.1 mRNA upstream 40053 23577578 ~ 23584567 (-) False LOC120563353
XM_039807478.1 mRNA upstream 40053 23577578 ~ 23584567 (-) False LOC120563353
XM_039807476.1 mRNA upstream 40053 23577578 ~ 23584567 (-) True LOC120563353
TU117944 other downstream 5138 23494330 ~ 23498659 (-) True G87538
XR_005639990.1 other downstream 797601 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other downstream 797601 22691048 ~ 22706196 (-) False parvg
TU117418 other downstream 1764469 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other downstream 1764469 21735006 ~ 21739328 (-) False LOC120564778
TU118073 other upstream 201457 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 367577 23905102 ~ 23905173 (-) True trnam-cau_7
XR_005640032.1 other upstream 371644 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other upstream 371644 23909169 ~ 23916202 (-) False LOC120563922
unassigned_transcript_380 other upstream 378309 23915834 ~ 23915906 (-) True trnar-acg_18

Expression Profile