RNA id: XM_039808569.1


Basic Information

Item Value
RNA id XM_039808569.1
length 3801
RNA type mRNA
GC content 0.46
exon number 7
gene id kcnd2
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 20727141 ~ 20762189 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACGCATTGATTAGTTTCCCCACAGTGAAGCAGCAGAGGAATTTCTGGGTGCAGATAGGACCACTCCTCTCTCTGCATAtgattttctctcttctctccacaGTCGGGGCTCGGTGATGAGGAGGGGGAGGGTGGTCTTGCAGTCGACGAGAGGAACAGGAGTTTATTGAGGAGTAGCTGCAACGCGAGGAAAAACGCATGCAACTGAGCACCGTTGCCTTGCGGatggaaagaagagagaaaaaagatcgCACTTGGACGACTGACCACTTCGCTGAGAAACTGCTGCTCGAATTGTTTAACTTGTTGATGCGACGTTATTCTACTGTTTTTCCTCTATCGTCTGGCTGCAGTATTCTCTTCCGAGGATAGGTATTTTATTAAAATCACCGTGGATGCAGTTTAAATAGCAGCCTTTCCTAAGCCTTGGAGCTTCAGAAGCCTAACCACCAGTGTCTCTATCTGCTGTTCTTCCTGCAGATGCAATTCATCTCTGAACCATAGCACTGTAATAACCGGAGCAGGGTTGTATTAAACACTATAGGCCAGCATGGCAGCAGGTGTAGCGGCATGGCTCCCATTCGCCCGAGCGGCGGCCATAGGATGGATGCCCGTGGCGAGCACCCCGATGCCCATCCCTCCGCAAGAAAAGACGAAAGGCAAGGACGGGCTCATCATCCTCAACGTGAGTGGGACCAAGTTTCAGACGTGGCGAACTACTTTAGAGAGGTACCCGGACACTTTGCTGGGGAGCACGGAGAGAGACTTCTTTTTCCACGAAGAGACAAACGAGTACTTCTTCGACCGTGACCCTGACATCTTTAGACATATCCTCAATTTTTTCCGCACAGGGAAACTACACTATCCGCGCCAAGAATGCATAGCAGCTTACGACGAGGAGCTCGCTTTCTTTGGTATAATCCCCGAAATCATTGGTGACTGCTGTTATGAGGAGTACAAGGACCGGAGGCGCGAAAATGCAGAGAGGCTTCAAGACGACGAGGAGATGGACATGAGCAATGACGCACCGCCGGTGAACCTCACGTACCGGGAGTTCCTGTGGCGGGCTTTTGAAAACCCTCACACCAGCACCTTAGCTCTGGTCTTCTACTATGTCACAGGCTTCTTCATTGCCATATCAGTGATGGCCAATGTGGTGGAGACGGTTCCGTGTGGGGTTTTGCCCAACAGGTCAAAGGAGATGTCCTGTGGCGACCGTTACGCACTGGCCTTCTTTTGTTTAGACACTGCGTGCGTCATGATATTCACGGTTGAGTATCTCCTTCGTCTAATAGCAGCTCCCAGTCGGTACAAGTTCATGAAGAGTGTGATGAGCGTCATTGACGTGGTCGCCATCATGCCTTACTACATTGGCCTGGTCATGACCGATAATGACCAGGTGAGCGGTGCTTTCGTCACACTGAGAGTCTTCCGGGTCTTTCGGATTTTCAAGTTCTCCCGGCACTCCGCGGGGCTGCGCATCCTGGGCTACACCTTGAAGAGTTGCGCTTCCGAGCTGGGCTTCCTACTATTCTCCCTCACCATGGCCATCATTATTTTTGCAACGGTCATGTTTTATGCAGAAAAGGGCTCCACAGCCAGCAAGTTCACCAGTATCCCCGCAGCGTTTTGGTACACCATtgtcaccatgacaacactGGGGTATGGTGACATGGTGCCAAAAACAATCGTGGGGAAGGTGTTTGGGTCCATATGCTCTCTGAGTGGGGTGCTGGTCATCGCCTTGCCTGTCCCTGTCATAGTGTCAAACTTCAGCCGTATCTACCACCAAAGCCAGCGGGCAGAGAAACGACGAGCCCAGAGGAAAGCTCGGCTTGGTAAAATCCGCGCTGCGAAGATTCGAGGCACTAATGTCTATATGCGCTACAAACAAAATGGGCTCCTGATCAACTCACTGGAGGAGGCCTCCAAGGAGGCAGGACGAGCCCTGGTGGCGAAGGCCCCCAGCCCTCCCTTTGAGAGCCAACATAATCACCTACTGCACTGCCTGGAGAAAACCACGAACCACGAGTTTGTGGACGAGCAGACGTTTCAGGCTAACTGCATGGAGATCTCTGTGATGAACAAGTCGGGGTCTCGTGCATCCTCGCTGTCCTCGTCTCCACACGGCCTCAGCTCGTGCTGCTCTCGGCGCCACAGGAAGAAGAGCAGCTTCAGCCTGCCCAGCACAAACAACCAGGAGCTCAGCACCATACAGATAAGAGAGAGGCCTGTGGCCAACAGCCGCTCCAGCCTGAATGCCAAACTTGATGAGACTGTGCCCTTGAAATGTGACAAACCTTACATCACTCCTTCCATGGTCAGCCTATCTGCACCTGTGGTGACCTCATCGGACGGACACGGCTCCATCACCACCGCCGCATACTCTCAGAGCAACATTGTCCGAGTATCTGCCTTGTAGATGTCATGCTTATCTGATCAGCTAACTGGTCTCAAGAAGCACCAGATGCTGAGGAGAGGGACCACCTAGCATCAACCTGCCATAATTTAGAGggattataaatataaaatctgGGTTTTTGAAGTAGTGATCTCATCTGATGTCACACTCTGCATGGTATTAAAATGATGTGGACGGCTGCCTTGGAAATTAAAGCAAACCAGCACATCTTGCGCCATTAAGCACAGCAGAGCAAGGAAGTGTTGGTATTGCGTGGTTATCGTTGTTGCCTAAAAATACTgagaaaaatttatttttgaacATGTAATGTAGTTTTATTTGTTGTCTTCTGATACTTAGGAGGAAAGGCAGATGTTAAAAGGTCATTCTTGATAGCCTCTGATGACAAAGCACACGTATTCATTAACTGAGGACCATCTTTGTGAATATTAAATCATCTACTTACATATTAGAATCACTCACCACCCAGTTAAATACATTGTTTTGAAACCCTTCAACTACCCTGTTTCTAATAGTCCCCTCATTGTTGTAAATTCAGAAAACATGCATCCACTGGAATGGATAACTGTTGTGAATATTCATTAACTGACTCATTAACTGGTTGATTTCATAGCTTGATGAGTAAAAAATACAACGCATCCACATGTTTCTGAAATGTGCAAGTGAacgtcaaaatgacaaaatCTTTGTTAACTTACATATTTGACAACCTGGTATGGATCTATGTGAAAGCCACTGTCATTAATTAACAATGGACATTGAGAAATATGCAGGGTACATATTAATTAGGTCACAAAGTAGAAATCTAAGTGACTGTTCTCCACAACACTTAACTAATACTAACCCTGATGTAGACACAGACTGACCTGGAAAACCATATGAAAGAGTGTTGAACATCAATTCCATTGCACTGCTCTTAAATTATAATATTCATTATAATAAGTGAGACTTGGTAGATTTCACTGTGTTAAAGGGccattttgtacatttttcataTTGTAAATATCTCATTTAGAACTTTATCAACTGCATTTGAAGTTGGCTCCTCTTATTTCTAGATTTAGTTGACAGTTGTTGGCATACTATTTCTGTCTGTTAACTGGTTGAATTAAGGATTTGCATGCTGTCATTGCAGAATTCTGTTTTATTAAAAGTATGTCTTCTTGTTGGAGGTTTGTCAGTAAAAATGAGATTGATGGAAGGAAACACAAAGAGACTGGTATATTATGATGTAAATTCTGCAAAGCTTTGCTTTTAATGAAATGCAAACCTTGTCATGGAGTACATATATAAGAGGTAAGGAAAAAGGACAAATGATCACACATTGTGCATTTGGTGCAGTGGTTAGAATAAATACTGTAGCTCTACTGAAACATCCA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG:

id description
K04892 KCND2, KV4.2; potassium voltage-gated channel Shal-related subfamily D member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116909 lncRNA downstream 27504 20698815 ~ 20699637 (-) True G86761
TU116815 lncRNA downstream 265318 20402744 ~ 20461823 (-) True G86686
TU116788 lncRNA downstream 462935 20250890 ~ 20264206 (-) False G86660
TU116787 lncRNA downstream 474615 20250890 ~ 20252526 (-) True G86660
TU116779 lncRNA downstream 485291 20241433 ~ 20241850 (-) True G86652
TU117040 lncRNA upstream 146200 20908389 ~ 20908590 (-) True G86853
TU117182 lncRNA upstream 340441 21102630 ~ 21103379 (-) True G86976
XR_005639947.1 lncRNA upstream 378318 21140507 ~ 21146513 (-) True LOC120563411
TU117244 lncRNA upstream 482821 21245010 ~ 21251759 (-) True G87030
TU117338 lncRNA upstream 607374 21369563 ~ 21370658 (-) False dnajb9a
XM_039807870.1 mRNA downstream 18946 20687065 ~ 20708195 (-) True hsp90b1
XM_039807869.1 mRNA downstream 19052 20699759 ~ 20708089 (-) False hsp90b1
XM_039807871.1 mRNA downstream 40454 20675436 ~ 20686687 (-) False hbp1
XM_039807875.1 mRNA downstream 40454 20675436 ~ 20686687 (-) False hbp1
XM_039807874.1 mRNA downstream 40557 20675436 ~ 20686584 (-) False hbp1
XM_039808898.1 mRNA upstream 18518 20780707 ~ 20803875 (-) True LOC120564151
XM_039808899.1 mRNA upstream 19004 20781193 ~ 20803472 (-) False LOC120564151
XM_039808653.1 mRNA upstream 44693 20806882 ~ 20829235 (-) False LOC120564033
XM_039808651.1 mRNA upstream 44693 20806882 ~ 20829235 (-) True LOC120564033
XM_039808656.1 mRNA upstream 44693 20806882 ~ 20828603 (-) False LOC120564033
TU116763 other downstream 467882 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 1044224 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 1155219 19570302 ~ 19571922 (-) False cep152
TU116428 other downstream 1338566 19387822 ~ 19388575 (-) True G86402
TU116306 other downstream 1409731 19315435 ~ 19317410 (-) False arpp19b
XR_005640056.1 other upstream 44693 20806882 ~ 20828603 (-) False LOC120564033
TU117029 other upstream 115522 20877711 ~ 20879638 (-) False LOC120563850
TU117396 other upstream 950853 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 972817 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 972817 21735006 ~ 21739328 (-) False LOC120564778

Expression Profile