Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006581 |
| length | 1541 |
| lncRNA type | retained_intron |
| GC content | 0.34 |
| exon number | 2 |
| gene id | XLOC_003360 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 15480695 ~ 15587134 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045736 | negative regulation of cyclin-dependent protein serine/threonine kinase activity | biological_process |
| GO:0006400 | tRNA modification | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0035596 | methylthiotransferase activity | molecular_function |
| GO:0035597 | N6-isopentenyladenosine methylthiotransferase activity | molecular_function |
| GO:0051536 | iron-sulfur cluster binding | molecular_function |
| GO:0051539 | 4 iron, 4 sulfur cluster binding | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070424-90 | Predicted to enable N6-isopentenyladenosine methylthiotransferase activity. Predicted to be involved in negative regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within tRNA modification. Predicted to be active in cytosol and mitochondrion. Orthologous to human CDK5RAP1 (CDK5 regulatory subunit associated protein 1). |
| ensembl_id | ENSDART00000155655 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008578 | lncRNA | upstream | 139321 | 15339344 ~ 15341413 (+) | True | XLOC_003359 |
| TCONS_00006579 | lncRNA | upstream | 462216 | 15017212 ~ 15018518 (+) | True | XLOC_003358 |
| TCONS_00006576 | lncRNA | upstream | 575757 | 14902709 ~ 14904977 (+) | True | XLOC_003356 |
| TCONS_00006575 | lncRNA | upstream | 617192 | 14862286 ~ 14863542 (+) | False | XLOC_003355 |
| TCONS_00008577 | lncRNA | upstream | 617459 | 14862416 ~ 14863275 (+) | True | XLOC_003355 |
| TCONS_00006583 | lncRNA | downstream | 293049 | 15776072 ~ 15777220 (+) | False | XLOC_003362 |
| TCONS_00006584 | lncRNA | downstream | 293049 | 15776072 ~ 15779251 (+) | True | XLOC_003362 |
| TCONS_00006585 | lncRNA | downstream | 316360 | 15799383 ~ 15801396 (+) | True | XLOC_003363 |
| TCONS_00006595 | lncRNA | downstream | 489496 | 15972519 ~ 15975848 (+) | True | XLOC_003366 |
| TCONS_00006597 | lncRNA | downstream | 557564 | 16040587 ~ 16045625 (+) | False | XLOC_003367 |
| TCONS_00006577 | mRNA | upstream | 509823 | 14937904 ~ 14970911 (+) | True | XLOC_003357 |
| TCONS_00006574 | mRNA | upstream | 729354 | 14676236 ~ 14751380 (+) | True | XLOC_003354 |
| TCONS_00006573 | mRNA | upstream | 840417 | 14622379 ~ 14640317 (+) | True | XLOC_003353 |
| TCONS_00006569 | mRNA | upstream | 1134622 | 14343446 ~ 14346112 (+) | False | XLOC_003352 |
| TCONS_00006568 | mRNA | upstream | 1135305 | 14343445 ~ 14345429 (+) | False | XLOC_003352 |
| TCONS_00006582 | mRNA | downstream | 130195 | 15613218 ~ 15756385 (+) | True | XLOC_003361 |
| TCONS_00006586 | mRNA | downstream | 338410 | 15821433 ~ 15868456 (+) | True | XLOC_003364 |
| TCONS_00006587 | mRNA | downstream | 395320 | 15878343 ~ 15887614 (+) | False | XLOC_003365 |
| TCONS_00006588 | mRNA | downstream | 395343 | 15878366 ~ 15902440 (+) | False | XLOC_003365 |
| TCONS_00006589 | mRNA | downstream | 395366 | 15878389 ~ 15888042 (+) | False | XLOC_003365 |
| TCONS_00006578 | other | upstream | 462210 | 15017185 ~ 15018524 (+) | False | XLOC_003358 |
| TCONS_00006571 | other | upstream | 841674 | 14431273 ~ 14639060 (+) | False | XLOC_003353 |
| TCONS_00006572 | other | upstream | 1039908 | 14431365 ~ 14440826 (+) | False | XLOC_003353 |
| TCONS_00006565 | other | upstream | 1139951 | 14333441 ~ 14340783 (+) | False | XLOC_003351 |
| TCONS_00006553 | other | upstream | 1232294 | 14199896 ~ 14248440 (+) | True | XLOC_003347 |
| TCONS_00006591 | other | downstream | 403947 | 15886970 ~ 15902195 (+) | False | XLOC_003365 |
| TCONS_00006599 | other | downstream | 587415 | 16070438 ~ 16083608 (+) | True | XLOC_003368 |
| TCONS_00006600 | other | downstream | 639763 | 16122786 ~ 16123082 (+) | True | XLOC_003369 |
| TCONS_00006621 | other | downstream | 1845542 | 17328565 ~ 17328681 (+) | True | XLOC_003376 |
| TCONS_00006622 | other | downstream | 1957568 | 17440591 ~ 17497093 (+) | False | XLOC_003377 |
