RNA id: XM_039808595.1


Basic Information

Item Value
RNA id XM_039808595.1
length 7682
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC120564015
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19341610 ~ 19358244 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCAGGCAGCTCGTCTGtagctgctgctggctgctgcagGCGTGCTATTTGCGGCAGCCGAGAGACCTCTGCGAAATGCCTTTTGTATTCCCGGGTGGTTTTTATGGTTTAGTTTTGTGTTTTGCGAGGGTCAGATCACAGTGTTTGTAGCCATGCTCTGTGGTGGATTCAGCAGGCTGTCCTAGCTGACTGAGCCGCTCCAGCAGCGGTGGGTCCGGTGCAGTGCACAGCCGGGGATGAGGCCTACTTGTTAAAGCTCCCCCACCACCCCTCCATCGTGATGGCTGATGATCAACAACAACCTGGTCAGAAGCCTGCCTCGGGATTAGGCTCTCTTCCAGCGCTGGTGCCAGGACTCCAAGGGCCCGAGGCTAACGCGTTACAGTTCAAAATAAAGAATTCAATTTGCAAATCTGTACAATCAAAAGTGGACAGCATATTGcaaGATGTTGAGAAGTTTACAGACATAGAAAAACTCTACCTCTACCTGAAGTTGCCTTCTGGTCCCAGCAGTGGCAATGATAAAAGTTTCCCCATATCTATTCATCACCCCAACCCCCCAATTCTGCCCATTTGGACTGAGAATGAGAGGGGGTCCTCCACTCCTGGATTATGTGATCAGAGTTCCATGTCGTCAAGCCGTACTCAACAGATGTATGCATTTAACTGGATACGGAATCACCTAGAAGAGCACCCAGAGACTTCACTCCCAAAGCAAGAGGTGTATGATGAATacaaGAGCTATTGTGACAATCTTGGCTACAATCCACTGAGTGCAGCGGACTTTGGAAAGATCATGAAGAATGTCTTTCCTAACATGAAGGCACGTCGACTGGGCATGAGGGGCAAATCCAAATACTGTTATAGCGGGTTAAGGAAGAAAGCTTTTGTTCACATGCCATCCTTACCCAACCTGGATCTGCAGAAATCTGGTGATGGGTGTGAGCTGATGGAGTCGACGGGCCAGTCCCCGAGCGCTGAGGATGAAATGAGATCTGCAGCCTGTGGCCTGGTGTGTGAGTGGGCCCAAAAGGTCCTGAGTCGTCAGTTTGACAATGTGGAGGACCTGGCCCGCTTCCTGCTCAATAGCCACTACATTGGTACTAAGTCCATGGCTGCACTCACTGTTATGACCGGAACACCCACAGGAATGAAGACGCCAACTCCAGCCTCTGCGTTTGTGCCAACAGCTGAGGCAAACTCTTTCCAGCCCCAGGTGAAGACCCTGCCCTCTCCTTCTGTTGATGCAAAGCAGCAACTGCAGCGCAAGATCCAGAAGAAGCAGCAGGAGCAGAAGCTCCACTCACCCCTGCCCAGTGAGGTCCAGGTCAAGAGAGCGGAGGCCAGTACCCCTGGCCCCACCATCCCCTGTGGTAGCCCTGCTCTGCTCTCCCCACAGCCCACCATAGGCATCGTGGTAGCAGCTGTCCCCAGCCCAGTCACGGTACAGAGAGGTAGGCAGTTAATGACCTCACCCAGCCCTGTAGGGACAGCAGAGGGGAAAGTGTTGCCTGTGAACTTCCAAGTAGTCACTCAGTCTCTTAAACAGTCCCCCAAACATCCCCAGAACATCTCAGCTAGTCCTGTGGGTGACCGGCTGGCACGACACGGCACACGGTACGCACAAATTCTGCCCAAGCCCTCTGCCACCAGTGCTATCACGCTGCGCTCACCCCCTACCCTGCTCATCACTAACAGTCCCATAAAAACTGTGATGCCAACTCCCCACGTCAGCTCAGTCAACGTGGTAAAGATGACGGCCATTGCTCTGGCtcccaacagcagcagcacaacCGTGCGTCCTGCCTCTGCAGGTGTGAATACCATAGCTGCTTTGGACGATTCCCAGCAGCCACACGGTGGGACCTCATTTGCCTCTCAGTCTTCTGCAATCAGACCCAGTGCCGTAGTCTCCACCCCAATCCTCTCCACTGACATTAAAGTGGTGTCTGAAGCTGGAAATGACAGTAACCCCACCCATGGCACAGAGAAAACTGCTGTTGGGGCCAAAGAGGAGAGAATGGCTAAGTTCAGGGCTGCCAGTGAGCCAAGCTTCCTGATTAAGTGTTCTCCCGGACCAGACAAAGGGGCGAGGATAAAAATGGACCCCACATCCCCTCCTGTCTCTGTAGCTGTAGCTGGGACTCAGGACAGCAATAACAGTAACTGCCATGACAGTACTTTGTACTTGACTGTTGATAATCAGAACTCCAATGGCAACACAATATCTATAGGCTCATCCGCTGTTACCCCAACAACGAAGGATCCCTGCCTAGATGCCAAGAGCCCCAGGAAGCGCACAGGCCCAGCCGGGGAGTCCCATGTGATTCCTGTGAAGAGGGTGTTTATCTCCCAGCAGCCACTAGCTATAATTGACAATCCCAAACCTGGAATCAATGCTGCATTGAAGAGGATCCCCAGACCGGGAACCCCTGCCAGACCAGAGAGTGCCCCCTGCAAAGTGACTGTGAAACACACCTCCATAGGGCCCACACAGATTCTTGCACTTTCTGACTCGCCTATCACACACACTGAGGGCTCCCAGACTGTTGTCAAACCCCAGGTTTTGATGGTGAAACGTGAAGACCATTCTCTCAGCACTGATACCAGCACTGGAGCAGCTGGAAACAACACGTCGGATCAGGCATTGCTACGGCAGATCACCGGGGACCCACATGCCATACCAGCCAACTCAGGAGCACACGAAGCCTCTGTGATGAGTGACTTAAAGAGCACAATATGGGAGGAGGGAGAGCTTGATGAGCTTCGGAAGCAGGCGTTTGCGCAGCAGATACCAGCAGAACACAAACAAGCCCCTACTGACCAACTTTCCATTATAGCTCAACCCCCCGAGGCCTCTGGCCAGCTCACCCTCACGCAGGAGATGGTTGACTTTGCAGGTTCTCAGTCCAACATGGACTACTTTCCGTTCAATGATGATGACATGACCCAGGACAGCATCGTGGAGGAGCTAGTCCAAATGGAGGAGCAGATGAAGCTGAAGGGTCTGTTTGGTAGCTGTGTTGATGTGTCTTTACAAGGCCAGTCAGCCAGCAATCAAGGCTCTATCCTAAGTGCTCATCAGGCCGGCACGACCTTCTTCCACTCTGCCCACAGCAGTACCACTCCTGTCCAAACTCCCACTCCAACACCGACTCCAACTccgacccccacccccacctctGAAATGACGCTTGGGCACAGCCTGACGAGAGAGAGCCCCTGCTCCCGCATGGCTCCCATCACCCCTGTGGATGGAGTCATGGGTCGCCACACCCCCATCAGCACACCACTGTCCAACTGCAGCAGCAGCGTCCCCCCAAGCCCAGTGGAGTGCAGGAACCCTTTTGCGTTCACTCCTATTAACTCAAGCATCACAGGTTATCATGACGCCAGTATTGTTTCCAGCAGCCCTGTTAAGCCCATGCAGAGGCCAATGGCAACACACCCTGACAAGGCCAAACTGGAGTGGATCAACAACCGCTACAACAGCAACTCTGCAGGTCCTTTGCCCAACCATAGCATTGGCATTCTGCCCAGCTACCAAGACCTGGTAGATGACCAGTTTCGTAAACCACATGCCTTTGCAATTCCAGGCCAGTCCTTTCAGGCTCAGTCAAGACAGGATACTGCTCACTTTGGCCGTTTGACCCCAATTTCCCCggtgcagcaacaacaacaacaacaacaacagcagcagcagcaacaacaacaacagcaacagcaacaacagcagcagcagcagctggtaACAGGTGTAACTACTCCCACTAAACAGGAGAGTTTTGCTGTACCTGCACCGTTGGACAACAAGGCATCAACCTCATCTGCGTCCAGTTCTTTCCGTTGCCGCAGTGTCAGTCCTGCAGTACGCCAGAGAAACTTCAGTGGCAACACTGGCCCtccaaccaccaccaccaccaataccaccaccaccaccacccgaGCGGTGGTTTCACCCTTTAACTCCCCCATCACCTCTGAGGTGCTCAGCATCCTGTCCAACAGCCAGACGGTCGGCTCTGTCCACAGCATGGTCCAGCGAAGCCAATCTGTACCCCTGAACATCATGATGCAGAGTGAGATGCTGCCTGTGCAGGGTCAAAGTAACACCGCCAAAATCACCAATGTTCTTCTCAGCAAGATGGAAGCTGATGGGGATGATTCTGTCCGTGGCCTGGGTATAAACAACCTCCCCTCTAACTACACGGCCCGTATGAACCTCACACAGATCCTGGAGACCACTCCTGGCTTCGCTGGAGGAACTGCTCACCAAACTCAGCTGCCTGTTAGCTCTAGCCCTGCTGCCTTTGAGCTCCAGCAGCATGGCTACCTCACCACCGGCAGTGGAGAACAGGTGAGTTTCTCAACTGGGGACAGCCAAGCACAAGCGGGTCCTGGTGAGCAAGACCAGCAGCAGCTCCAGGAGAATGCTGTGCAGACACAACCACAGCTCCTCCTCCAGAGCACACAGCAGCAGGATGTGGAGGACGAGCAACAGCTGGATTTCAACAACACTGTCAAGGACTTGTTGGGAGATGATGGCCTCAACCCCAGTTCCCAGTTGGTGGGTCAGGTAGCTTCTGAGCTCAACGCTGTGGCGTCTGACTTCTCAAACGACATCAGACTGACCTCAGATCTGTCCAGTAGCATCACTGACCTTAACACGTTGGACACCAACCTGCTGTTTGATCCTAATCAACAGCAGGAACAATATGAAGACTCAACACTGGAAGAGCTGAAGAACGACCCGCTTTTTCAGCAGATATGCAGTGATACTGTGAACTCTGGTTTTGACTGGCTAGAAAGCAAAGACCAGCCTACTACAGTAGAGATGCTGGGCTAATGTTATCTTTTACTCTGTGTGATTTCTGTTCTCTGTTGTTTGTTTGGTGCGTATGTAGTTTATCTGTTGTTAAACTATAGTTTGTTGGGATTTGTCTGGACTTTGCCATTCGTTCTGTTAAAAGTGCCAGGCTTACCAGAAAATCTCTCCTACTGCATTTAGTTACTTCTCTCCTTTTTCATTTGTCACCCAGAGTTTCAGTACTTAATCATCTTTCTCCCTCATCTGAAATTAGAAATGTAAGCATTTCAATGTAAAAGTGTGAGTACTTGGTGGCAGCATGCACTTACGAAGAGCAGGTTTGTATGTTATGAACATTAAGAGAAACGTAATCTTCCATGTTATAACCAATCAATAATgcaatatttaaatttaacgGACAGTTGACAAAAGAAGGAGATGGGTAGTAAATTTGGCACAAAAgaccaaaaaaacatttgctgtTGTCTACTAAATAAATAGTGTGTGCAGTTCAAGTTCAACCAAATGGAGACAATATTGGGATTGTAGTATATGCACATAATAGTTGTAGTACATTTGCCTGCCATATCTGAATATTAAAAAAGGGTAGCATATTATGCTGCCAGGTGCTGAATTTATGACATAATCTTTATACTTTATCATATACCAAATCAGTGGAAAACTGATTTACATCTGAGCATTGTCCAAGAGTGAAATGTTCTTAAAGCCTATACTTCTTGTACTGTTTAATATCTTATTAAGGGAGTAGATAAATCAGTAGGGAGAAGATGGGAATTCAGGCCACTTTGTGGACTATACATCGAAAGGAATCAACAACTGTCTGCCTTATTCCCAAAGTCCAAGGCCTTATGCCATCTGTAGAGAgactgtatataatataatgttaagAATCTTCTGAACCATCCAGAGCTTCGTCATATCAAGGCAGCTGTTACTCTGATATTTTCAGTACTATttcttattgtttttgttttgcagtgTTAAAATATAGATGCATATTGTATAGGCTAACGACTACACTGTGTGTGCCCTTATCAGTAATGGATTTAGAGGAATAGAGGAATTGATATACTGTCTATTAACCATGGCAGGCACACTTTCAGTCATGAGATTCTTTTGGCATGCTATACTCCCAGCTTGGATAAGAATATCAGTGGTATGGAGAAGGCTTAGTTATATAGAAAGCTAGAGGCTGACATTTATGTTTTGATGCCATCTAGGGATCAAGAGGAAATTAAATTATGTTTGTGGAGAATCCAGCCTTATTTCCATACCAAAGATGATCTGTTTCAATAACATAAGAGATTATTACACATAGAGACACTCCTAGTTAACATTAACAACAATGAGAAACAGGCAGCCTCGGAGATATAAAAGAGTTTTATTGCATTTGAGGAAAAGGGTTAAGTTGCGTAAAtcttatgtacagtatgtagatttgtgaaatggtcactgTCCTATGTTTTATAGGTAACCATGGACCTGAAAGCATGTTGAAACCATCACTGCTAGCCAGGTAGGCTATGTGATACAGTAGGATGCTTGCTTGAGTTTTTGGCTATTGTCAATGTTGTATAAGTCATGTTTAAGCTTCATCTGTAAATAGGATAGATACATAGAGATTTGATGTATCAAGACACTATAATATGGCCATTATTCTAGCTAAGTATGTGccattcaaaagaaaaaaaagcttaacAGATCTATAGTCGGCaagatactgtatgttgtgtgttacATTTCTGGCTCAATGTGTCGTAAAAGTAATGCTGTCTGGTCTCGCTtgctgattttcttttacttttttctatTCAAAGATAATAGGTCTCTGCAGTTGCAGAAGTGATGTGTGCTTTGAGCAGGATCAATAGCATGGTATATTGAGAAAAAAAGTTGTGATACTGTTAGCTGGTTGCAAACATCTCTGTGACAGACATTGTGCTCAAAGCCTTTCAGCAGACACTGGAAAAAACGATTACTCATGTTTCAACAAACTTTGGAGGTTCACATTATTGCACTAAATTTTTATGACACATGGCTTTGCCACATCTTTATGGACAAATGTAATGATGGATgcccacaaaaaaaagaaaaaaaatattttttatgacaaCATGCGTAGGGAAATTAACTGTCAGAAAATGACTAATTGTCTTGTAGCAAAATGTGCATTAATCTCAGTGAGATACACATTTCTTACTCATTCTCATACATGAGAATATAAAGCATTGAgggaaaaaagttaaacaacCTTTTAAAACCTACATGCTCATTATGTTGATAAATGATTGTACGCACGCATGTGTGATAACTTCTGTTGTACTTTGTATTCTTGGTAACCACTGTCTTCTGTGATTTGGGCAGGTTCTGTTAACCAGACTGGCAGTGCTAGTTTCATGAGTTGCATTACTTTCGTTCTGTGCTGTTTTCTAAGTTAATGTTGTTCTATATGTTATATTGATGActgttttttgttgattttttacaTATTCTTATTTTGCAAAATGCATTTGTGAAGAAATATAACATTTTCTCGTAattttctttaacaataaggcactgatatttgaatttgaatgaagGAAATGCACCTCTTTATGAGTACATGAGCTCCATCAAGCAGTGACTCTGATTCTTTACCTTTGACTGACCCAGAACCAACTCTGTTTGACTATCTTGTCCATTTCTAccagtagaaaaaaaaacctccTCTGTGGTGTTGTCTGGTGTACTGCTTAATGTACAGTAGCTTGTTAATATTGCAAATGcgttgtttcttttttcaatgGAAAGTACTCACTGGTGAGATTTTTAAAGTGGTTTTAAAAGCCAATAAACTTTTTTAAAGAATGtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116322 lncRNA downstream 73173 19268211 ~ 19268437 (-) True G86337
TU116210 lncRNA downstream 181429 19156770 ~ 19160181 (-) False LOC120564082
TU116201 lncRNA downstream 209444 19131851 ~ 19132166 (-) True G86253
TU116127 lncRNA downstream 329529 19010925 ~ 19012081 (-) True G86195
TU116419 lncRNA upstream 10515 19368759 ~ 19369056 (-) True G86394
TU116420 lncRNA upstream 12763 19371007 ~ 19374939 (-) True G86395
TU116426 lncRNA upstream 25375 19383619 ~ 19384007 (-) True G86400
TU116461 lncRNA upstream 167443 19525687 ~ 19527137 (-) True G86430
TU116464 lncRNA upstream 172332 19530576 ~ 19531622 (-) True G86432
XM_039808689.1 mRNA downstream 2495 19323799 ~ 19339115 (-) True LOC120564050
XM_039808760.1 mRNA downstream 18939 19318887 ~ 19322671 (-) True rsl24d1
XM_039808761.1 mRNA downstream 24132 19315385 ~ 19317478 (-) True arpp19b
XM_039808686.1 mRNA downstream 27947 19296993 ~ 19313663 (-) True LOC120564048
XM_039808687.1 mRNA downstream 45523 19285472 ~ 19296087 (-) True myo5c
XM_039808574.1 mRNA upstream 38994 19397238 ~ 19415937 (-) True LOC120564004
XM_039809862.1 mRNA upstream 59382 19417626 ~ 19423222 (-) True fan1
XM_039809844.1 mRNA upstream 76005 19434249 ~ 19436656 (-) True duox2
XM_039809013.1 mRNA upstream 179258 19537502 ~ 19547183 (-) True zgc:101540
XM_039809019.1 mRNA upstream 190818 19549062 ~ 19557179 (-) False LOC120564200
TU116306 other downstream 24200 19315435 ~ 19317410 (-) False arpp19b
TU116123 other downstream 330694 19007196 ~ 19010916 (-) False G86194
TU116124 other downstream 330694 19007196 ~ 19010916 (-) True G86194
TU115837 other downstream 693526 18645526 ~ 18648084 (-) False syt7a
TU115791 other downstream 838744 18499328 ~ 18502866 (-) False tmem258
TU116428 other upstream 29578 19387822 ~ 19388575 (-) True G86402
TU116584 other upstream 212058 19570302 ~ 19571922 (-) False cep152
unassigned_transcript_376 other upstream 324602 19682846 ~ 19682917 (-) True trnap-agg_7
TU116763 other upstream 894395 20252639 ~ 20259259 (-) True G86638
XR_005640056.1 other upstream 1448638 20806882 ~ 20828603 (-) False LOC120564033

Expression Profile