RNA id: XM_039808612.1


Basic Information

Item Value
RNA id XM_039808612.1
length 8661
RNA type mRNA
GC content 0.52
exon number 58
gene id otogl
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 15262486 ~ 15291962 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACCACAGAGCCGAATAACCAAGCTGTCTGCTGCCTGAGGAGAATGTTGGAGTGACAGAGCACTGCAGGCTTACCTGCCCACACAGGTGTAGGCTACTCGTCATCTGCTCAGGGGGGCTGTCGCCACCAGGTAGGTTTTAACAGGTACGGCCAAGCATCGTCCCGGTGCTACCATCCTAAACCCTTTCCTCCCGGGACCATTGAGATGCACCGTTAACGTTTCGGTGGGACTTCCTTTCGGACTCTGAGATGAACTTAAAGTGGACAGTAAAACGATTTCTTCTTATGTCGTTTTCAATCTCCCACTTGCTGTTACTTGAGGGAGCTCAGACCCGACTTTCAGTGGCAGAAGGAAGACTACAGAGaagggCTAATGCACTTCGGAGGAAACGGGATCTCCTCGGGGAGGAGACATACAGACCGCTGCTGTCGGAGGGTTCTCTGTCACGCAGCATTTTACACAACTACACAGCCAGAGATGCCTCTTCAGAATATTGCGGCTGCCTCAATGGTGGCTGGTGTCAGGAGGgcggtgtgtgtgactgtgctcAATTCCAGGCACTGGGAGACCGCTGCCAGATCATACCTAACCAGGGCCAGGACAGGGACGGCATCTGCAGGTCGTGGGGTCAGAACCACTACGAAACATTTGATGGAATCTACTTCTACTTCCCTGGAACCTGCTCTTATATTCTGGCCCAGGACTGCCACTCAGCTGCACCACAGTACACAGTGTGGGTCCACAACAGCAGAGTGTGTGATGGGAGTGTGTATTCATGCCCAAGAGCTCTCAGTCTGTTCTTCCCAAATGAGGAGGAGATCCACATCTCTGGATATCAGGTCCACCAGGGAGGccgcagGTTAAGTCTGCCTCAGACTGTAAGCGGTCTGTTTATTGAGCGACTGGCTGATTACCTGCTGGTGAAGAGTGTGTTTGGCTTCTCTTTGGCCTGGGATGGAGGCTCGGGCGTCTACCTGAAGATGAGCGAGGAGCATCAGGGTGCCCCCTGTGGCCTATGTGGAAACTTCAACCACGTTGCTGGCGATGACCTCACCACCTCCCGTGGCATTCGGACAGATGAGCCTGCGTTGTTTGCTAACAGCTGGGCAGTGGACCTGCCTCATGAGAGAGCCTGTCCCTCAGTAGACCTCGACTTCAATGGGCCCTGCCATTCTGAGTCAGACATGGATGATGCCATAGAGAAATGCAGCGCACTTCTCTTCTTCCCATTTCTGTCCTGTCATGAAAACATTGACCCAAATCCCTTTGTGGCCAGCTGTGTGTCAGACCTCTGTGTATCTGATGACGAGGAAACATTTTGTCGAGCTTTGGTTGAGTACACTCGAGCCTGCTCACATGTTGGATATCCAGTAAGAGAGTGGAGAGACAGCTTCCCTTCTTGTAaCGATGGCTGTGAGGAGAGTTTTGTCTATAGAGACTGTATCAGTTGCTGCCCACCCACCTGCACATTTGAGAAAGAGTGTCTGGGAACCAACTTGCATTGTCTGGATGGCTGCTACTGCCCTGATGGTCTTATCCTACAAAATGGAACATGTATCGCTGTTTCTCAGTGTCCATGTGTTTACCATGGTACATCATATGTACAAGGACACGTGCTTCAACAAGGATGTAGTGTTTGCGTGTGCATGGGAGGAGTGTGGAACTGCACTGAGAACAACTGCACAGTGGAGTGTTCGGTGATAGGTGACGTGTTTGTGACGACATTTGACGGTAGGATGTTTCTCCAGCCGGGGGCGTGTCAGTACGTGCTGGCAAAGAGCCGCAACAGCCGATTCACCGTCACACTGCAATATACTACCTGTGCAGAGCAGCAGGTGTGCATTCAGTCGGTGACAGTGGTGTTGGACGAAGATGTGACTCGTCAAATCACTTTGACCAGAGAGGGGGAGGTGATAATTGGTGTAAACCCGGCTCCTGTCCTTCCCTATGTTGATGATGCAGTAGAAGTGCGGAAGCTGACCTCTGTGTTTACACAGCTGAAGGCAGGGATTGGTCTGAGGCTGCATTATGATGGTCAAGGGGGGCGGGTCTATCTGCAGCTGGATAGCCAGTGGCGTGGACAGACGCTGGGCCTTTGTGGAACCTTCAATGGAAATCTACGAGATGACTTCCTgtccCCAGCAGGTATGATAGAGGGCACTCCTCAGCTTCATGCCAACGCTTGGAAGGTTTCATCTGCTTGTGTCGCTCCAGTCAACCTGCCCATCATAGACCCATGTGAGATGAACCAGCGCAATGTGTTCTATGCCTCACAGTGCGATGTGCTTTTGGGGAGTGTGTTTGCCCCGTGTCATGGCTACATCAGTCCAAACATCTACCAGCAGCAGTGCCGCTACCAGGCCTGTCGTTGCGGGAGCAGCTGTTTGTGCACAGCACTGGCTCACTACGCTTACCTCTGCTCCAAACACGGAGTCGACGTTAATTTCAGAGCACACGTCTCTGAATGTGGAGTGGTGTGTCTTGGAGGCATGCTGTACCACTCTTGTGTGTCGTCTTGCGGGCGGTCCTGTCGTGCTCTGTCTAGCACAGAGACGTGTAACCCTGACGACTGTGCCGAGGGGTGTGGCTGTCCAGACGGCAGTTACCATGACAATGTGCGCCAGCGCTGCGTGCAACTGTCTCAGTGTCACTGTTACTCCATGGGTGGTGTGTCACAGCCAGGGGAGGTGAGCTTCAGCGCCTCTGGCCCCTGCCTGTGCAGAAATGGGAAGATGGAGTGTGTGCCAGAGGAAAAAGAGCCAGATAGTGTAGAGGTCGGGGAGTGTCCAGAGGGGAAAGTGTACCACAGCTGCACCGAGCAGAGAGGAGGCGTAGCCTGTGCACCGACCTGCCGTAACCTGATGTTGAACCTTACCTGCCCTCCCAGCACACCATGCATCCCTGGCTGTGTCTGCCCTCCTGGGCTGGTGCTGCACCACAGCGAGTGTTACTTTCCAGAGAACTGCCCCTGTGCCTGGCTGGGCCTTGAATACCTGCCTGGAGAAACTGTGGAAACATCATGCTACAAATGTGTCTGTCACCGTGGCTATTTTAACTGCAGCCACTCACCATGTCCAGCTGTGTGTACTGTCTACAGCGACAGACACTACCACACCTTCGATGGCCTCGAGTATGACTACAACTCTGACTGTCAGGTCTACCTGCTTAAAAGTGCAGGAGAAACCGAGGTGTCCATTGTTGCCCAAAACAAGGACTGCTATGAGAGCGGCATTGTGTGCATGAAAATACTGGTCATTCACGTGGGACTTACCAAGATCTACTTCACAGACAACTCTGGCAACCCTAGTCCGTCCACTGTTGTAGGTCGAGGGTCAGAGTTTGAGCTTTGGAAAGCCGGCTACTACACTGTGGTCTACTTCTCCAATCAGGACCTGACCATCCTCTGGGACCGCAAGACGACTGTGCACATTAGAGCTGGACCTCAGTGGAAGggCCTTCTCAGTGGGCTATGTGGAAATtttgacagtgtgacagtgaatGATATGACCACCTCCAGCCACATGGAAGTCAATAATGCACAGACCTTTGGTGATAGCTGGGCCCTGGGACAGtgtcaAAGTGACTACATAGTTGAGCGACCGTGTGAAGGCGACTTAGGCAGACAGCCGTACGCCAAGAGGGAGTGTGCTCTCCTCTACAGCGATGTCTTTGCACCCTGTCACAACGTGGTGGATGTGGCCTGGTTCTATAGGAACTGCCTGACAGACACTTGCAATTGTAACCGTGGGGGAGACTGTGAGTGTCTCTGTACATCCATCGCTGCATATGCACACAAATGCTGTCAACAGGGGGTCACAATACACTGGAGATCACCCTCTGTCTGTcCCTACGATTGTGAATACTATAATCAAGAGCTAGGCGACGGCCCATTTTCCTTGGTGAGTGCTGTTTATAATGACACCGTGTTTGGAGTGAATCGCACCAGCagctcagtgtttcctctggtGAGAGAGAGACCAGGGCAGTTGCCTGCCCCAGGCTTACTGTTCAACTTCATGATCACAGCAGGCTTGCAGAAGGACAGAACATCACGTGTCCCTGTGGTGTCACTGGAGTCTGCAGAGAGGCCAAATTATTTCCTTGTCGTGTCGGGACGCAGCCGTCTTCAGTTGGAGCGCTGGAGTCGAGGGCCGGAGTTTAATCGCAGGGCAACCTTTATCCAGCACCAGGGACTGTTTCTGACAGGTCGCACCTCATTCGAGCTTGTCGGCCAACCTGGAATCTTTCTTACACTGACACGCACTGCCGCACGAGCTCAGAGATATGACACCTCAGAGGGCTTCAAAGCCAGCAGCAGCTTCAAACTGGAggAGAGCACTTTTGTGATACCCTATCGTATGATGTGTGAGTGGCGCTACCAGGCCTGTGCCAGCCCTTGTGTCCACACGTGCAGTGACCCAGATGCCACCCGCTGCCACTTCCTGCCTCCTGTGGAGGGCTGCTTCCCACGTTGTCCCAAGAACATGGTCCTTGATGAAGTCACTCGAAGATGTGTCTACAAAGAGGACTGTGTGTCTCTTCCCCCAACTCCGACACCCTTTGCATATGTGACGCAGTCGAACAGAACTACGACAGCACCAACAACAACTCCAACTACAACCACTacgactactactactactaccacaaGGCCGAGAAccacaaccaccaccaccaccaccacatccACCACTACCACAAGAGCAAGAACTACCTCCTCCACTACTGTAAGGCCCACAACCCCCACTACCACTCCCACTACTCCCAGTACAACATCAGCCACTGAGCGTGTCACCACTCGGCTCACCCCTCCTTCATCTAcaactcctgctgctcctcccaCCACTACTGTTTCTACCACACTCACTCCCTCAACCCCGCCAGAGACAACTACTCTCAGCACGACTGAGATGACTCCCACTCAAACTACGGTAACCACAGGGGTCACTACAACCACCAGCACAGCAACACCCTCCATTGTATCCACAGAGGCTACTACAGTCACCCCgacttcttctcctccttccccTACTACTCTTTCTTCCACCTCCTCGCCCTCCACTCCTACCTCCCCCACCATTACCACACCATCGCCAACATTACCAGCAACTTCCACCCCACCTCCTCTAACCTCCGCCTCCACTCAGCCACCACCCACCACAGCCGTCACCACTGCCCCCACCTCTACCACCTCTGTACCTGAAACGCCCACCGAAACCACAACCACTCCCCAGCCTACACCCGCGGGTACAACCAGCGCCATAGAGACCACCACGCCAACAGACACCTCAACAGTTGTTGTGACAACCACAGCACCATTTCCTACAACCTTCGAGCCCACTACTGAGCCAAGTACCACAGAAATAATCCCAAGCCCTGACACCTCTCCGATAACAGAGGAAGCATCAACCACGCATCCCTTTGTCTTGCCCACTTCTCCTTGCACACCTCCGTACTCCTACCGCATCGATGAGTGTGCTGAGCTGATCTGTTTTAATGGAGAGCTGCTGCTTCACAACTCCTCTCTACACTGTCGCTACAACACCACCCAGCCCCAGTGCAGTCTGTTGGGCCTGCCCATCCTCATCAACACAGACCCCTGCTGTCCACAGTGGCAGTGCCCCTGTCGCTGCACTGTGATGTCAGACCTGCGTGTTATCACATTCGATGGCAACAATGTGGCCCTGTATGATAACGGCTCTTACATCCTGGTTAATCTGCCCAGAGAGACTATTATTGGCGCCGTGGAGAAATGTCCGACCAGTCAGagtgTAAACTCCATCAGACGAACTAGTCCTACAGGTGGAACATCTGGTCTGTGTTTTAAGAAGCTGAACATTACTACCTCCTCCTACAGAATCATTATCAACCGACTGGATCGCAAGGTGACAGTAAACTACAGACCTGCTAGACTTCCATTCTCCCGTCACTCTCTTTATGTGGAAGACACAGGCAGCATGTACCTGATCCACACACCTGGCGGGGTCAGCATACAATGGTATCACAGCACCGGCATCATGGTACTGCAGTACATCACTACTTATAATGCATCTGTTCCCACTCGAGGCCTGTGTGGTTGTTGTGATGGCAACCCAGAAGACGACCTGAAGCTGCCCAATGGTACAGTGGTCAGAGAGGTGGGAGACATGGTGCTCTTCCTGCAGGCTTGGAGAGTCCACACCACTGATGAAACCGAACACACACGCAGAGTCGGAGACAACTGCACCATCGAGGACTGCTCCACCTGTCTCTCCATGCTCCGCCAGAGAGCCTTCGTGCCATGCCACAGCAAGgTCCCTCCGGAGCAGTTCTGCGACATCATGTGGGCGGGGGACCTCCACTACAAGGATCACCAGTGTGACTTCCTGGCGGCGTACGTGGCGGTCTGCTACACACATCAAGTCTGCATCAGCTGGAGAAGACACAACTTCTGCCCATTGCGGTGTCCCCCTGGTAAGGAGTATCAGCCATGTGTGAGCACCTGCGCCAGCCGCACCTGTCTGAACACAGAGTACTACGAGGAGACCACCTGCTCCTTCATcagagaggagtgtgtgtgccGCAGTGGAACCATCCTGCACCGTGCTGACTCCCCTTACTGTGTAACTGAGGATCGCTGTGTGTGCACAGATAATGAGGGTAACCCTCGGTCCCCGGGCGAGGTGTGGAATGGCTCTGCTCGCGGCTGCTGTCTGTACAAGTGTATGGAGAATGGCTCTGTGGTGGCTGTGGAGCCAGACTGCAACTCTGTCCCTACACCGCTGTGTGAGAGGGAAGGAGAGTACGTACTGGATGTGTTGGAAGAAGGAGCCTGCTGCCCGAAGAAGATATGTGAGTGCAACATGACCATCTGTGACAGCGAAGCTCCACCTTGTGATAATGGGAACCGGCTAGTGATTGGTTACAGCGCTCTGTCCTGCTGCCCAGAGTACAGATGTGAGTGTGACCCCATGGCATGCCCTCCTGTGCCTGCCCCCAACTGCAGGGAAGATCAGTTCCTAGTGGAGGTCAGGGGGGGGAAATCCTGCTGCTTCTCTTACCTGTGTGTGTGTGAGTCATGTCTTGAACCCATTCCAACTTGTTCACATGGAGAAATTCTGGCCGTGGATCTAAACTCCACCAACAGCTGCTGCCCACAGTACCATTGTGTGTGTGATGTCAACCTGTGCCCTGAATCATCTGTGACCTGTACACCTGGTCTCTCTTTGGTTCAAACTGCTGTCCCCGGACATTGCTGCCCGCAGCACCACTGTGAATGCCAATGTGAGGACAGCTCTCTCCCCATCTGCCAGGTGGGGGAAGTGATGGTCGTGGTTCCAGACAGCAGCACCAACTGTGACTGTCCTCAGCATACATGCCagaaGGCAGAGGTGTGTCTTTTCCAAGGGGTAACAGTGCTGAGCCCAGGCCAGTCTCTGGTTCAGTACTTTGAAGGAGAGCTGTGTTACACTGTCCACTGCCTGCATCAAAGAGATCCAGACTCTGGCTTCTACGCAATGGAAATTACGTCTGTCAACTGCTCCCAAAAATGTGGGCCACACCAGGTGTATGTAACCTCTATAGACCCTCAGGTGTGCTGCGGCTCCTGTAAAAATGTCTCCTGTACCTTTACCAACGAAAACGGGACAACAGAGCTTTTCGCTGCAGGGAGTTCCTGGGTGGAGAACTGTACACGTTACGACTGCATGGAAACAGCAGTGGGAGCGGTGATACTTGCCTCTGGAGTGATTTGCCCGCCTTTCAATGACACAGAGTGTATTCAGAATGGCGGGGTGGTTCAGAGCTATGTGGACGGTTGCTGCAAGACATGTTCTGGAGTGGGTGTTTTACCATTTACCGTTAATCCCATAACCCCCACTGGTAGTACTAACTGTGACACAGGTAAAGAGGATGGTAAGACATGCAAACGTGTGGCCATTCGGACTACCATTAGAAAAGATGACTGCAGGAGCAATGCACCgGTAACAGTCTATTCTTGTGATGGGAAATGCCCGTCTGCCACCATATTCAACTTTAACATCAACAGTCACGCCCGGTTCTGTAAGTGCTGCCGCGAGAGTGGACTACAAACCCGCTCCGTCACACTCTACTGCTCTCGCAACGCCACAGTCGTGGAGTACAACTTTCAAGAGCCTCTGGACTGTTCCTGCCAATGGAACTAAATCAATCTATTGATCGATTCATTTGATTTGTCACATTTAATCATATAAGGTACAATTCAGGGTCCAGGCAGAGCATGAAAACCAGCcatgtttcattttatttgtcGTAGACCGTAGTTGTAACTGGAAAAAACTGATGAAGTGGGCGATTGTTTTCAAGTAGTTCTGTTTTCACATTAGTCTTTATTTTCTTCAAGACCTGCTGTGCCAACCCAGTCAGCTTTCTAGTGCTTTCAAGTGATGGTACAATGCCGTTAGCCTCTTATCCTACTGTATATTAACAATTGATTATGTTGACACAAAAGTTGTTGCAAATTTTATATGCGCTGTTGGGATATTTTGGTTTGTCTTAGGAGATACATTTGGCCTCTGTACAAATAAGTGTAATGCAAAGCTTTGTTTCCTTCAAAAAGTTtgagtttctaaaatgtgacattttgggCTCTTTGTAGTTTCCGTATTTTGAAGTAAATTAGGGGAATAAAAGATGTAACAGTG

Function

GO: NA

KEGG:

id description
K25030 OTOG, OTOGL; otogelin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114507 lncRNA downstream 83313 15178340 ~ 15179173 (-) True G85027
TU114476 lncRNA downstream 199349 15062611 ~ 15063137 (-) True G85011
TU114472 lncRNA downstream 204557 15057725 ~ 15057929 (-) True G85007
TU114375 lncRNA downstream 307079 14954128 ~ 14955407 (-) True G84948
TU114585 lncRNA upstream 69875 15361837 ~ 15363425 (-) True G85084
XR_005639985.1 lncRNA upstream 161247 15453209 ~ 15455514 (-) True LOC120563611
TU114626 lncRNA upstream 163693 15455655 ~ 15458913 (-) False G85121
TU114627 lncRNA upstream 163693 15455655 ~ 15458913 (-) True G85121
XR_005639984.1 lncRNA upstream 163878 15455840 ~ 15456554 (-) True LOC120563610
XM_039808523.1 mRNA downstream 673 15219750 ~ 15261813 (-) False ptprq
XM_039808522.1 mRNA downstream 673 15219750 ~ 15261813 (-) True ptprq
XM_039808524.1 mRNA downstream 674 15219750 ~ 15261812 (-) False ptprq
XM_039808527.1 mRNA downstream 24870 15234332 ~ 15237616 (-) True LOC120563965
XM_039808566.1 mRNA downstream 72500 15182609 ~ 15189986 (-) False wash1
XM_039808619.1 mRNA upstream 6725 15298687 ~ 15304280 (-) True syt1b
XM_039808617.1 mRNA upstream 18915 15310877 ~ 15317845 (-) False cd9a
XM_039808618.1 mRNA upstream 18915 15310877 ~ 15316386 (-) True cd9a
XM_039807895.1 mRNA upstream 164845 15456807 ~ 15463714 (-) False pgpep1l
XM_039807894.1 mRNA upstream 168838 15460800 ~ 15463714 (-) True pgpep1l
TU114482 other downstream 189136 15066039 ~ 15073350 (-) True G85014
TU114449 other downstream 295039 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114408 other downstream 755285 14501960 ~ 14507201 (-) False LOC120563775
TU114145 other downstream 1025534 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 1229271 14031104 ~ 14033215 (-) False zgc:77752
TU114636 other upstream 187020 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 222816 15514778 ~ 15544082 (-) True G85133
TU114908 other upstream 1147412 16439374 ~ 16440965 (-) True G85321
unassigned_transcript_374 other upstream 1472753 16764715 ~ 16764786 (-) True trnah-gug_10
TU115062 other upstream 1516094 16808056 ~ 16808416 (-) True G85435

Expression Profile