RNA id: XM_039808653.1


Basic Information

Item Value
RNA id XM_039808653.1
length 5299
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC120564033
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 20806882 ~ 20829235 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagagaccgaAAGATATGTGGGTGAAGGGTAGTGTTAAAAATGGAGgtgaggatgtgtgtgttttagatgCTGTTTATAGTACAAGAGCCACTTTTCATTAGCAGTAaacagagatagaaagagagtcAGCAAGGGGAGGAAATGAACAATGGAGGGGAAATGATCAGTTATCTGCAGTGGTAGCTGTCAGCCTCCACTGGAACAGCCTGTCTGGACCTCATTATAGGTCAGTTCATTTGGCTTAGGGGCCAAGGCTGAATGTACACGAGTGTttgaggaagtgtgtgtgtgcagtatgtGCAGTAAAGCACAGATAAATGGTAAACGCTGCAAGATGCAAAGAAATAGTTTGCATATGTTTTGGTGCTGTGATCCTCTGAGCTCCTTTTGGAAACCTGTTGGTTTGTTGTCATATATTCAAATCCTCGACATTGTTTATTAGGAACTAGACAAGCCAGTTGGAATATGCATGatagatttatatatatatataaatttagcATTTGGCAGCCAAATGATTTGCAATTCACTGGAGATTTACTATTTTGCCAACTCTTTCACACTGGTGGATTGAGCTCTCAAATTATTTCACACTTGAAATAGTCTACTATGGTATCAAAGGCAAAGTCCAAGATTTCCATATGAATTTGGCGAATTAGGATTTTTAGAAAGTATTTGAAAactatctgtaaactatttcaaaaaataattatcagtACCTTACTGTAATATACACAATTCTAAACCTGATTGTTGGTGTATGTGGGGGCGAAGGGTGGGGGGAAGGAAAGAGGCACTGAAAAGAGGGAAGAAGTTGAAATAAGAGTGCAAAAATAGTTAACAGAGGGTAAACCAGGCAgtggaagagaaagagacagagagagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagatctgCGCAGGGAGACGGAGCTTCGCGTCTGGAAAACAGCATCTTTCCCTCCACTCTGCTCCTCCCCTCTTCCCTCTCGGCATCTCTCCCACGCTCCAAAGCTCAGCCTTCAGCTCCCCGGATCCTCCCAAATTCTCCCGAGCTACAGGGGGCTATGGATGGACTGCGTTTACCTCCACTCATCGAGGAGGCTTTGGACTCTACAGGCATCCCTTTCTAATATCGCTGTCATCTTTTCATCAGATGACCCGTGCGATCTGAAAGCAGAGTGCAGCCCCACCATGGACAACGAGATAACAGCGAAGGAGAGAGGCGTTCTGGAGGAGAACAACGAGAAAGAGGAGATGGACCAGGAGAGAgctcaggaggaggagggggaagagaagaagctgaaggaggaggaaggtgaaggggaggagaagaggaagccGGATCAGGAGCCGCTGACAGAGGAGCAGGAGCTGGAGGAGCTGAGGGCCCaggtgctgcagctgctgctggagcTGGACGATGCCAGAGAGACCTCCAACAAACACCAGGAGAGCTTCCATGAGCTGCAAGGTCTGCTGGAGGATGAGCGCCTGGCCAGTGCCCATCAGGCTGAAGCCTTCACACGCCAGATCCAGAATCTCCAAGCCCAGCTGCGTTCTGTGCAGGAGGAGATGGACAgcctggaggaggagaaggaaagcGAGCTGGCCGAGGCCCAGGAGGAGCTGCGCGTTGCTCAGGAGGAGGTGATCCTGCTCCAACAGGCGGCAGAGGAGGCGGCAGCAGAGAGGGAGAACGACATCGCCTCGCTGCAGGAGGAGCTGTGTCGCCGGCGGGCCGAGCTGCAGCGCCTCAGCGAGGAGACCCAGGAGTACGAGCTGGAGATCACCACGCTGAGAGCCGAGATCAGCATGAAGAGTCAGCGCAGAGAGGCCGAGAGGAAAGAGGGTGACGTGGACCTGCTGAAGGAGGAGTGCCGTGTGCTGAAGGAGGAGTGTCAGACCCTGAAAGAGGACAACAGACGTCTTTCTGagaggctgcagctgctgcagagACAGAGGACATGCTCCAGTGTCTACCTGTCACTGAAAGAGGAGGATGCAGAGGAGGGCACAGAGGGGAAGGATATGGGGATTGGCTCGGATGAGGTCATGACAGAGAGTTACATGACCATGGCCCAGTCTGAGAACTGTCGCCTTGTGGACGCGTCCATCCAGAAGAATATTTCGTTTGATGGAAAGCCCATGACACCAACCGGCTGGAACGGAGGCATCGGGGAGATCTTCTCCCTGAGGGACCAGCTCAAACAGGCAGAGGAGAAAGCCTCACAGGTTCAGAGAGAGTGTAACGGTCTCAAGATTGAGCTGCAGGAGCTGCAGGTACTGTATGACTGCAGCCAGAGGGAGAGagcagagctggaggaggagctgcagcGCTGCAAGGCAGAGCTGGAGAAGCTGTCAGGGGGGGCTCAGAGATTCATCCATGCGTCTGAGCACCCTGTTCTCTCCATCCCCTTCATAGGAATAATTGTAATATTGGCTGTGGTCTGGTGCTGGTTGTCGGAGCTGGCGTCCCAGAGGGCAAGGGGAGTGAGGTAGGTTGGAACTCCATTTTGACTATCACTGCAGCCACAGCAGTGCTACTAATGATGACTAGCTTGTTGAGAGCCCTCGTCCGATGTTGACTGGATGGGCAACAACTGCACAGGGACAGACGTCTGCTTCAGACCAGCCCTCGTTCTCTCCTGCCATGTCTATAGACTGAACTGGATTTCTCTTAATGCGATAGAGCCGACAGCGGTGTAGTACATGTATGGGAAATGTTGTCGCTAATGAAAAGGTACCACATGCACTGATAACGATGCGCTCAGTCGCATTTAAGactgaagatgatgatgagttGACCTGCAGAGCGCCCAACATGAGGACCGATCTCACTCCACTAAATGTATGCTAGTGCTGTGACACTCTTCCTCTGTGTCTGTGAATattatttttctctcctttAGCTAACAATGTGATAAAAATGAAGGTTTTGATTATTAATGTGCACCAACTGGTTTTCAAATTATGTaaccattatttatttatttgtttaaatatttcatTTCATAGTTACATAGTTCATAGTGGTCTCTGATAATAATGACAAACACGGAGTCTGGAGATTTAATGCACTGAAATCCCTGATATGTAGGCCTGTATCTTTATATTAACAAAATGAGCAGTTTGTAAATTAGTTGACTATTAACTTCTTGTTGCTTTCCCCCAAATTCTGAATGCAATATATTCCACGTACTACAAAACTGGATTAAATGTCACAAAATCTCCATGAATTAACATCAGCATAACATTACAAACTATCCTGCCAGTGATAGTTTACAGGGGCAGGGTTAGAAGGAGGTGGCACTGGCTCCCCCTGAAATATGATTGATCTCCCTGGTGCCCCCCCCCAATCCATTGAGCTAgcgtgctgtcaatctgacaattgtgatttccattgaatcagagtactgtcacttggccGCCTATTCTGCtaatcttcccagcccttgtcacatgaccaattaatgatgattatccaaaattctgataccatggaatAACCACtagaattgttttgtttgttttttaaaagtggcagactgagcctataAAAAAAGTCTATTGTATTCAGATATATagattgtttaaaatgaaaacaagtgaaactaataatacatgtgatgttttatttagcagaattacattgtgttgttctatcctatccaatatttcctgtatttctaagcatattttctatgctgtattctgataaaatatCCCCCCTACCCCCCTTCCCCCTGGGCCCCCCtgactgattattggtccccctgtgccaccccactcctagaatcgcccctggatGTTTAACCCCTCGTGGGTGGAGTCGGCTCCTCTTACAGTGTTGTTCAGTTATGTGCTTTGCTCCAGGCTCTGTCACTTCTGCCTGCCTCAAGTGTCTCGTGTCTGACTCTGAAATCAAACAACTCCCGCCTTCCTCTTTAATTCTCAGTTTAACCAAGATGCCAGAAAGTCTGTGCAGTATTTCTGATTTATCTAACCTGCCCGCAGCTCACTTTGTGATCAATTCTAAAATCTTACACCCACAGCTGCATCGTTAAACTTACAAATATGGTTTGCTGTAGTTTTGTTATGTGCTGGTAAAGATATCTCAGCAAATTTGGGAGTAAATTGTAGGATAATTAAGCTATATTATTATGTTTTCTAACATTTCGCTATGTAGAAATAACATTTTGTTCCTCTCCAGCAGGATTTAAATGGCTAGTGTATTGTTATTTTGATTTTCTGGTGATTACAGGTTGTTCTAGGTACTCAGTGGGTGAATGTCGACTGCCAGCGTTCCCTTGTTTACTGACGACACGCTTTATGTAACAAACTGCAGATCTGATAAACATGCGTCTGAAGTGAAAGAACTAACACGGTTGGATAGTTGTGAGGGCATTTTAGAAATTGGTATAGCTCCAAAATATATCAATAGGAAGGTGTCAGAAAAAAGTTTGTTTAAGcattaattacaaaaaaatatatgtatatgtggaAGGACTCTGATTATTGTTTACATttgtgaaacgtttttttggtGAAAATAGTTTAGAACTGAAAAAAAGCATGCTAGAAAACAAATAGAAGCACAATATATTATTTATGTTAATTCTTTGTATTTCATGTAAATAGTTATGACATATATGGGAGAGATATTTCTTAAATCCATTTGTACTGGCTTTGTAGAAAGTTTATTCTATTTTGAAAGAGCATCGTATATTTGATAGCCAAattgtgtaaatgtttatttatgGTGATGTTATTCAGAACTGCTAACACTGCTAATCATTTCCAGTGTAGTCATTGCATGCATTTAGATAGCATTTGACCTTAGTTGCTAGAAAGAGCAATACGGCTCATTAATTTCAGAAATGTATTCAAATCTTTTCTGAAACATTTGTCATTAAACAGAACCTTGATAAGCAAAGCCTGACCAATGTTATTTCTGCCTATGAAAACACAATTAGAaaattatgatgatgatgatgatgatgttttaaCTGTCCATTTAAGTATTGCAATAGAAATTAAATTCCCATTGACTGCAATGGTACATATGAATTGTCTGATTCCGAATATAAGTTTGTATTATTTCATGAATATGAGCTTTATCATAGTTTTACAAGCTTCTATATAGCACCGTGTTTCtcagattattttattttttacactttgttatatttatttgacATCATTGTTGTTTTCAATATAGTTGTGGCTATTTTGTACGGTAAATgacttacaaataaaaatacccACCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116909 lncRNA downstream 107245 20698815 ~ 20699637 (-) True G86761
TU116815 lncRNA downstream 345059 20402744 ~ 20461823 (-) True G86686
TU116788 lncRNA downstream 542676 20250890 ~ 20264206 (-) False G86660
TU116787 lncRNA downstream 554356 20250890 ~ 20252526 (-) True G86660
TU116779 lncRNA downstream 565032 20241433 ~ 20241850 (-) True G86652
TU117040 lncRNA upstream 79154 20908389 ~ 20908590 (-) True G86853
TU117182 lncRNA upstream 273395 21102630 ~ 21103379 (-) True G86976
XR_005639947.1 lncRNA upstream 311272 21140507 ~ 21146513 (-) True LOC120563411
TU117244 lncRNA upstream 415775 21245010 ~ 21251759 (-) True G87030
TU117338 lncRNA upstream 540328 21369563 ~ 21370658 (-) False dnajb9a
XM_039808898.1 mRNA downstream 3007 20780707 ~ 20803875 (-) True LOC120564151
XM_039808899.1 mRNA downstream 3410 20781193 ~ 20803472 (-) False LOC120564151
XM_039808569.1 mRNA downstream 44693 20727141 ~ 20762189 (-) True kcnd2
XM_039808568.1 mRNA downstream 44694 20727141 ~ 20762188 (-) False kcnd2
XM_039808570.1 mRNA downstream 44695 20727141 ~ 20762187 (-) False kcnd2
XM_039807915.1 mRNA upstream 7455 20836690 ~ 20848727 (-) False LOC120563622
XM_039807917.1 mRNA upstream 7455 20836690 ~ 20848727 (-) False LOC120563622
XM_039807918.1 mRNA upstream 7455 20836690 ~ 20848727 (-) False LOC120563622
XM_039807916.1 mRNA upstream 7455 20836690 ~ 20848727 (-) False LOC120563622
XM_039807914.1 mRNA upstream 7455 20836690 ~ 20847927 (-) False LOC120563622
TU116763 other downstream 547623 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 1123965 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 1234960 19570302 ~ 19571922 (-) False cep152
TU116428 other downstream 1418307 19387822 ~ 19388575 (-) True G86402
TU116306 other downstream 1489472 19315435 ~ 19317410 (-) False arpp19b
TU117029 other upstream 48476 20877711 ~ 20879638 (-) False LOC120563850
TU117396 other upstream 883807 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 905771 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 905771 21735006 ~ 21739328 (-) False LOC120564778
XR_005639990.1 other upstream 1859926 22689161 ~ 22706196 (-) True parvg

Expression Profile