RNA id: XM_039808690.1


Basic Information

Item Value
RNA id XM_039808690.1
length 5125
RNA type mRNA
GC content 0.45
exon number 21
gene id ap4e1
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19269748 ~ 19280198 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGCCTGGTCAGTCTGCTGAATCAAAACAATGGCCGACTGACAAGCTAGTATTTTACCTATTGTGATCTTTTTTAATTAACTAACAACATTTAACAATTAACACTCTCTGGCTCCGTTTAAGAAACTCTTACTGGGATGGATAGATGATTTAATAAGTgtattttgaaagaaaaaaacagctacCAAGTTCCGCTGTTCGCTGGCAAAATGAGCGATGTTGTGGAGAAGACCCTGACAGCTCTGCCGAGCCTCCTGTCTTTAGACTCTCAGCCTGGATCTACAAAACTGTCCTCCACCTCAAAACTAGGAACCCTCATCAGAGGAATCACTGAGTTAACGTCCAAACATGAGGAGGAAAAACTTATTCAACGTGAACTAACATCTATCAAAGAACAGGTGTCCTCCCCCAACACCTCCATGAGGCAGATGAAGGAGCTCATGGTGAGAGCAATCTACTGTGAAATGCTCGGTTATGAGGCTGCGTTCAGCTATATTCATGCCATCAAACTGGCTCAACAAGGCACTGCTCTGGAAAAAAGAGTTGGTTACCTTGCTGTGTCTTTGTTTCTTAACGAAAGTCACGAGCTGCTTCTTCTCCTTGTGAACACTGTTTTAAAGgATCTTCAGAGCACAAACCTTATTGAAGTCTGCATGGCTCTAACTGTTGTCAGCCAGATATTCCCCAAAGATATGATTCCTGCGATCCTTCCTCTGGTCGAAGAGAAACTTAATCACCCAAAAGAAATCATTCGCCGAAAAGCAGTCTTGGCACTGTATAAATTCTACCTAATAGCACCGAATCAAGTTCAACACATCCACAACAAGTTTCGTAAAGCTCTGTGTGACAAGGATCCTGGTGTCATGACAGCTTCACTACACATCTACTTACAGATGATCCAGGAGAATCCAGAAGGTTATAAGGACCTGACAGCAAGTTTTGTCACCATAATGAAGCAAGTGGTGGGAGGAAAACTGCCCATGGATTTTAACTATCATAGTGTCcctgctccatggctgcaaatTCAGCTTCTCAGAATATTGTCCTTACTTGGGAAAAATGACCAGAGTACAAGTGAGATCATGTATGAGGTCCTCGACGAGTCTTTACGAAGAGCAGAGATGAATCATAACATCACCTACGCAATATTATACGAgtgtgtaaaatgtatttacacaaTTCATCCCAAATCTGAACTTTTGGAAAAAGCTGCAAAGTGCATTGGCAATTTTGTTCTGTCACCAAAGATTAATCTCAAATATCTCGGCTTGAAGGCCCTCACCTATGTGGTCCAGCAGGACCCTAAACTGGCCCTGCAGCATCAGATGACCATCATAGAGTGTCTCGATCATCCCGACCTCATCATCAAGCGTGAGACACTGGAGTTGCTCTTTCGGATCACCAACGCCCAGAATGTCACAGTCATCGTTGAGAAGATGCTGGAGTTTCTGCGAATTAATAAAGATGACTACACTACCATTGACCTGGTGGGGAAGGTGGCAGAACTGGCAGAGAAATATGCACCAGACAATGAATGGTTCATTGAGACCATGAACACAGTGTTTTCACTGGGTGGAGACATGATGCAGCCAGACATCCCAAACAGTTTCCTTAAACTGCTGTCTGAGGGATTTGACAGCGTGGAGGAAGACAGGAAGTTGAGGCTGTTTGCTGTGGATTCATATGTTTCTCTGCTGCAAGGAGAGCCTGGCAAACTGCCACAGCGCTTCCTCCAAGTCATCAGCTGGGTCCTCGGTGAATACTCCTATTTGAGGAAGGAACTTGAAGCGGCCACAGTCCTGAAGCTGCTGGCCAAACTGCTGGACATGAAGAACACCAGCAGTGAAACCAAGAGCTGGGTCCTCATGGCAATGACCAAGCTCTGTGAGGGCAGGACAGGTCTTTCTGTGGCCCAGGAGGTTTCTGAAACATATAGCAGCTCCCTGGACACAGTACTGAGACAGAGGGCTCAGGAGCTGCAGCACCTTAGCCAAGACTGGGAACTACAAGCCAGGGTGCTACCTCGAGACACCGGCCATGAACCTCTGGAGgTAGATTCCTCTCTATCATTTCTGGATGGATTCGTGTCGGAGGCGCTGGCTGCTGGCGCTGCTCCATACAAGCCTCAACATCAACGGCAGGAGGAACTAGCTCAGGCAAAAGCGTTGAGCCTGGATCCATACGGCCTGTCCCTGCCCATCAGCATGTCCTCCTGCAGCATCGCAGACAGACAGTCTCCTACACTGTTATCCATAAGCTCTGGTCTGTCAGGCGATAGCACCGAACTCTCACACAAAGGAGGCTCTACAAGTCTGAAGCTGGATGGTGTAAAGAGGGTGTGGGGCAGGGAGGGCTACCTGGCACAGAGGGAACCTGTGGAGGAGTGTGCCCATGTTGAGGTTCCCAGTCCCCTCCGTTCACCCAACCACCATGGAGAGGCTGACGGTTCACCCAGTCAGACTCCCACTCCCACTCCGACACCGACCCCCGAGCCCGAACTGGAGAAACGGCAGCTGGCCTCTTCACTGTTTGTCGGCCTGAGCTCCCAAAGCTCTCTGTGTCTGATGGGGAAATCTGAGCCGACACCCCAGCGATTTAGAAGAAAAGCAAAAGGTCCGGTCTCGTCCTCGGTTGCCAGCGAGCAAATATCCAACTCCCTCGTCTCTACTCCGAGCACAGTGGATAACTTGCTGTGTAACAACCTCCTGGACACCAACATCACCTCAGAGCTGGATGTTTCTTCACTCCAACAGACATCCCAACTCACTCATGGCCTCACTGCTGCAAATGGCCACTGTGATGTAGAGTTAACTGACAGTGACATAAAGGGAAGTAGCCCCTCTCTCATTGGGGATAACGGGCTGGTAGCTGCTGATCCGGGTTTACATGAGGACCCAGATGGACCTAAAGACTTGTGTCTCAGTTCTCATCTTCCTGCAGAGCTCTCTGGACTCTCTCACTCCGAAATCACTCCTCTGTGCTCCAAACAAAGCCTGGATCTCTCGGCCTGTCATGTGCATAAAGATGATTTCTTAGTACTAGTTGTTTTCATTTACAACTCCTCTGACTCTGACATTCAACAGATAATATTAGAGCTTGACTCAGATGAACTTGAGgtatcctgtgtgtgtgacagtcgAGTGCAGGAGGCGAGAAGCCACAGTGTAGCAGTGTGTCAGTATTTCCTGACCGTGAAGAGACCTTCAGTCCATGTTGAAGTGGTTGGGATCGTATCTTACCAGTTTCCTGTTGGGACGCCTCAGTCGGTGCAGTTCTCATACAAACTGCCTCTAACCAGCTTCATCAGACCTTTGACTCTGACCACGGAGGAATACGGGACAATGTGGCTGGACTTTTCTCACGATACAAAGCAGAACCTGACACTGATAAGTGACGGCCAAGAACCTCTCGCAGCCACTCTGAATATGCTGGAGAAGAAACTTCAACTTCATGTTGTGGAAGTCATAGGTATGGAAGGTATTGTAGCCTGCCGGCTCCTCCCGGATCAGCCGTGTCTGATGCACTGTCGTCTGCATGCAGGAACTCTGGCCGTGTGGCTGCGCTCTCCAGTCCCCGACCTGCCCGACTGCCTGATGTACCACTGTCAGAGAGCTTTACAGGAGCACTGAGACCCCATTGACACCACTAAGCAACATGAGCACCGGACCCTCAACCACTGAAGAGGAAGGTACACAGAGCAGTAGTGCAGAACATCTGGTGTTGTGCATTCTCATTTTTATATTACAGTGTTTACCATTTGTTTATCTCTTCCACTATAAGTGACAacgactttatttttttttgtccatgtaTCCTTTCTTTTTAACAGTTAAGTTGGTGGAATATTTTACAGGATTGTTTAAAGTCATGGCTGGTAATAACCTCAGGGCCAAAAGACGGTGTTTTTAACCTTCTGTGGGTGTTTGATGTTTCAGAATAACAATAATGTCTTAAAATGATGACAGGACTTCATGATGACTTTAAAACTGTAATGCTTGAAACAGCATTACAGTTAGTGAGTGAAATGAATATTGAATATGATATTCTCAGTATGAAGGGAAAATCATGAATTGACTTACTTGGTTACTTCTTGCACCCCTTGTCTGCATGCTGAATATCAATAGAGGTCATGTCCTGCTTTCTAATTTCAGCTACACTTTCTAGGCTACAAGAATCATGACAGTGAAGCCCATTTGTATTTTAATCAGACAAATACATATATTAATTTTGTTCTTTTCAAGTTTATCAATACTAATTGAAGCAATGCTGAGTGAAATGGAAATAATAACTCAAATCCTTGCATTGGATTGGTTGATGTTATTTATTAGGTGTCTTTGGGAGAAGCACAGGGAAGATATTGATATCTTTTAGGAGTACCAAACCGAACAAACCATTTCAGGAGAATTTAAACTACTCCCAGAGAGCTGCTTTTTAAGAAGAACCTGCTCGTCTTTACTGCTGAAGTTTCAACACAGAGAAAAGATCTCTACATGTTTGTCTTTAGGATTACATTATGCTGACACTAACCTCCAGCTGCAGAAGTTACACATATTTCTTACATCTATGATGAGAGTATTTTGTCTCAAATATATCAATGACAGGAAGATGTCCTTATTGTCCATTTGTCATTATAATGAGGAGCATTTCAGTTTCCCCTGGTGTTTCACAGGCGCTGCCTTCTATGCACTCATGTTTCTGTCGGTGAGAGGTGGGttttttgattattatatttttgtatcaatgcagtattaaaaacatatttattggATTTATATTCTTacagaaaatattttatattaatttctctgaaagaaagaaaatcatcGTGCTCCATGTACTGTTTGATCGCACTGTGCCAGATCTGACTTGTCTCagcctgttttatttaattcaaccTGAAGGGAAAGTTTACCTTTGTTCTTTGTTGCCTGTGTCCTGATTAGAGCACAGCGTGATGCTAACAATGTGTCTAAAACTCAGTTTTAACCCAACGCCTTATGTTCTAACGCCAAAGTGGCGTATTTGATTTGTGCCTGTGGTACAGAGAAAATCATTGTTTATTAGAGTGCCTGTCATTACATTCTGCTAACTTATGAATAAAtccaacacatgtaaatgaactTGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030117 membrane coat cellular_component

KEGG:

id description
K12400 AP4E1; AP-4 complex subunit epsilon-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116322 lncRNA downstream 1311 19268211 ~ 19268437 (-) True G86337
TU116210 lncRNA downstream 109567 19156770 ~ 19160181 (-) False LOC120564082
TU116201 lncRNA downstream 137582 19131851 ~ 19132166 (-) True G86253
TU116127 lncRNA downstream 257667 19010925 ~ 19012081 (-) True G86195
TU116126 lncRNA downstream 257667 19011106 ~ 19012081 (-) False G86195
TU116419 lncRNA upstream 88561 19368759 ~ 19369056 (-) True G86394
TU116420 lncRNA upstream 90809 19371007 ~ 19374939 (-) True G86395
TU116426 lncRNA upstream 103421 19383619 ~ 19384007 (-) True G86400
TU116461 lncRNA upstream 245489 19525687 ~ 19527137 (-) True G86430
TU116464 lncRNA upstream 250378 19530576 ~ 19531622 (-) True G86432
XM_039808709.1 mRNA downstream 5384 19249998 ~ 19264364 (-) False LOC120564055
XM_039808705.1 mRNA downstream 5385 19249998 ~ 19264363 (-) False LOC120564055
XM_039808706.1 mRNA downstream 5385 19249998 ~ 19264363 (-) False LOC120564055
XM_039808708.1 mRNA downstream 5386 19249998 ~ 19264362 (-) False LOC120564055
XM_039808704.1 mRNA downstream 5386 19249998 ~ 19264362 (-) True LOC120564055
XM_039808751.1 mRNA upstream 919 19281117 ~ 19285297 (-) True gnb5a
XM_039808687.1 mRNA upstream 5274 19285472 ~ 19296087 (-) True myo5c
XM_039808686.1 mRNA upstream 16795 19296993 ~ 19313663 (-) True LOC120564048
XM_039808761.1 mRNA upstream 35187 19315385 ~ 19317478 (-) True arpp19b
XM_039808760.1 mRNA upstream 38689 19318887 ~ 19322671 (-) True rsl24d1
TU116123 other downstream 258832 19007196 ~ 19010916 (-) False G86194
TU116124 other downstream 258832 19007196 ~ 19010916 (-) True G86194
TU115837 other downstream 621664 18645526 ~ 18648084 (-) False syt7a
TU115790 other downstream 766882 18499328 ~ 18502866 (-) True tmem258
TU116306 other upstream 35237 19315435 ~ 19317410 (-) False arpp19b
TU116428 other upstream 107624 19387822 ~ 19388575 (-) True G86402
TU116584 other upstream 290104 19570302 ~ 19571922 (-) False cep152
unassigned_transcript_376 other upstream 402648 19682846 ~ 19682917 (-) True trnap-agg_7
TU116763 other upstream 972441 20252639 ~ 20259259 (-) True G86638

Expression Profile