RNA id: XM_039808766.1


Basic Information

Item Value
RNA id XM_039808766.1
length 4123
RNA type mRNA
GC content 0.47
exon number 33
gene id washc4
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 27061216 ~ 27077833 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATTCACAAAATCACGAGAGTCATCATGGGACCGTGTAGCCTTTAACCTACTGCAGCAGTGTTTTGGGTCACCGATGTAGACAGTATGGCGGTAGAAACCATCGCACCTGACTGGGAGTTTGACCGTTTTGACGACGGTTCACAAAaaatacacacagaggTTCAACTGAAGAACTACAGCAAATTTCTGGAGGACTACACCTCCCAGCTGAGGGGTATCGAGGAGGCTCTGGATGACTCCATCGGAGATGTGTGGGACTTCACTCTGGACCCCATTGCCCTGAAGctaatccCATATGAGCAGTCATCATTATTGGAGTTAATTAAAACAGACAACAAgGTTCTGAACAAAGTCATCACAGTTTATGCTGCGCTCTGCAGTGAAGTGAAGAAGCTTAAGTATGAGGCAGAAACCAAGTTTTACAATGGCTTATTGTACTACGGAGAAGGAGTGTCTGACACTAGTGTTGTTGAAGGAGAGTCCCAGATTCAAATGGGCAGATTTATCTCATTCCTTCAGGAACTGTCCTGTTTTGTGTCAAGATGTTATGAAGTGGTGGTCAACATTGTTCATCAGCTAGCTGCCCTCTACAACAGCAACAAGGGTGCAACAAAAATCATTGAGTCATCAGGTGTCCATTTCCAGATAGTGTACGAACATCTGGGAGAGTTGTTAGTAGTTCTGCTCACGCTCGATGAGATAATGGAAAATCATGGCACGCTGAAAGATCACTGGAAGATGTAtaaaagGTTGTTGAAATCTGTGCACCATAACCCGGGGAAATTTTCCATTCCTGAAGAGAAGCTGAAACCATTTGAGAAGCTTCTGCTCAAGCTTGAGGGACAGATGCTGGATGGCATGATACTGCAGGCCTGTGTGGAGCAGAGATTCGATGATCCTGGGGAAGGAGTAGCTGTTGCCAAAAACAGTGCTTTTGCCGAGGAGTTTGCCTTCAACATTCGCACCATATTCACCAATGTCGAGTCCAAAATTGGCGAACCTTCAGAGATTGACCAGAGAGATAAATATGCTGGTGTCTGTGGTCTCTATGTGCTTCACTTTCACATCTTTAGGTGTGTTGACAAAAAGTTCTACAAGGCACTGCTCGACGTCTGTAAAAAGGTTCCAGCTGTCACTCTGACTGCAAACATCATCTGGTTTCCTGACACTTTCCTCCTCGCTAAGGTCCCAGCCGCAGCTAAACTGATGGATAAGAAGAGTCTACAGGCCATCAGAGCGCAGAGAGACACCTACCTGCAGCAAAGAGCTCAGGCACTAACAAAGGATGTTCAGTCCTACTACGTGTTTGTAACTTCCTGGATGATGAAGATGGAGTCCATTCTGTCCAAGGAGCATAAAAGCGACAAGTTGGCAGAAGACTTGAACAGCAGGTGTAATGTCTTTGTACAGGGCATCCTGTATGCATACAGCATCATCACCATTATCAAAACCACCATGAACATGTACATGTCGATGCAGCGGCCCATGACCAAGACCTCTGTCAAAGCTCTGTGTCGACTGGTTGAATTGCTCAAGGCTGTGGAGCACACATTTCACAGGCGATCCATGGTCGTAGCAGACTCTGTTTCTCACATCACTCAGCAGCTGCAGTCACAGGCCCTCAACGCCATCGGCATCGCCAAGAAAAGGGTGATCTCCGAAAAGAAGTACAGCGAGCAGCGGCTGGATGTGCTGTCGTCTTTGGTGCTGGCAGAAAATGCTCTGAGTGGACCAAGCACAAAGGAGCGACGCCTGGTGGTGTCTCTGGCACTGTGTGTCGGCACGCAGCTGAAAACGTTTAAAGATGAGGAGCTGCTTCCACTGCAGCTTGTGTTGAAGAAGCTGGATCTGATAAGTGAGCTGAGTGAGAGGGTCAAGCTGCAGTGCAACTGTAGTTTCCTTTACTGGCACCGAGCTGTGTTTCCCATCTACCTAGATGATGTATACGACCACGCCATGGACGCAGCACGAATACACTACATGTTTAGTGCGCTGCGGGACAGCGTGCCGTCCATGTTGCACGCTAAACACATGGCATCCTGTGACCAGCTACTGGAGAGCTACGACAAGGAGATCATGGACGTGTTTAACGAGCACCTGCTGGACAAGCTGTGTAAGGAGATTGAGAAGGACCTGCGTCTCTCTGTACACACCCATCTGAAGCTGGACGACCGGAACCCTTTCAAAGTTGGCATGAAGGACCTTGCccacttcttctccctcaaacCCATCCGATTTTTCAACCGCTTCATCCATATTAAAGCCTATGTGACCCACTACCTGGATAAAACGTTCTACAACCTAACCACTGTCGCTCTGCATGACTGGGCCACCTACAGTGAGATGAGAAACCTCGCCACGCAGCGCTATGGACTTACCATGACGGAGGCACACCTGCCCAGCCAGACCCTGGAGCAGGGTTTGGACGTTCTGGAGATCATGAGGAACATTCATGTTTTTGTCTCGCGCTACCTCTATAACCTCAACAACCAGATCTTCATAGAAAAGGCCAGTAACAACAAGCACTTGAACACCATCAACATCCGTCACATCGCCAACTCGATCCGGACCCACGGCACAGGCATTATGAACACCACGGTGAATTTCACCTACCAGTTCCTACAGAAGAAGTTTTACATCTTCAGTCAGTTTATGTATGACGAACACATCAAGTCCAGACTCATCAAGGACATCCGCTTCTTCAGAGAAACAAAGGACCAGACCGATCAGAAGtATCCATTTGAGCGAGCGGAGAAGTTTAACCGTGGCATCAGGAAGTTGGGCATTACTCCTGATGGACAGAGCTACCTGGACCAGTTCAGACAGCTCATCAGCCAGattgGTAACGCCATGGGCTATGTGCGTATGATCCGTTCTGGAGGCCTCCACTGTTGCAGCAGTGCTATCAGGTTTGTCCCCGACCTGGAGGATATAGTCAACTTTGAGGAGCTGGTGAAGGAGGAGGGGCTGTCGGAGGACACCCGGAAAGCTGCTAGTGTCCTAGATTCAGTGTTGGGAGATCTGACCAGCAACTCTGCAGAGGGCACAGAGTACTTCAAGATGCTGGTGGCGGTGTTTGCACCGGAGTTTCGCAGTGCCAAGAATATGCACCTGAGGAACTTCTACATGATTGTACCCCCACTGACGGTGAATTTTGTGGAGCACTCCATCAGCTGCAAAGAGAAACTCAACAAGAAGAACAAAACTGGAGCTGCTTTCACAGATGATGGCTTTGCTATGGGTGTGGCGTACATTTTGAAGCTGCTTGACCAGTATCTGGAGTTTGATTCTCTGCACTGGTTCCAGGCCGTCAGAGATAAGTACAAGAAAGAGATGAATGCTGTGGTGAAGGAGCAGAGCGTCCAGTCTGCCAGCCAGGATGAAAAGTTGTTGCAAACGATGAACCTCACTCAGAAGAGGCTGGATGTCTACCTTCAGGAGTTTGAGCTGCTCCACTTCTCATTAAGCAGCGCCCGGATCTTCTTCAGAGCAGACAAGACTGCAGCCGAGGAGACTCAGGAGAAGAAAGAAGCTTCCAAAGCAGGAGGTACAACCCCTGCTGAACCTGCCTCAAAGTGACCCTCCAGATCAGTGTTCACAACTTGAGTACTGACAGATGAGGGGAGTATGCGCCTGGCCAGAGGAGGAAGTTTGAAGAGAGGATCTCGAGCAGCAGATTGCACTGAAATGTGTGTGCAGTTTAGGCAGAAAGGACCATAAACTGGATGAAACGACAGATAATTGAATGATATTGTTTCTCTTTATGTCCCATGACAAAGCAGTTCTCTTCATTAGAGGAAAAAAAATTTGTGCTTAagtgtctatttttttttttttgtgtgtgtttccgttCTACAGAAACATCAATTTAACATCCCCTCAGTTTTGAAGTGTTTGCAACATCTAAATAAATTCAGTTTGAATTTGTAGCATTTACGCAAGCgactgcaatttaaaaaaaaaaaaggtcaagtGGTGTAACGAGTGTAAGGTGAAAGTGAATGCTTTCCTCTGCCACACTGCCTTCTGATACTTATACATCCAGTCTGGATCACTTTTCATAGCAGCTGTATGCGTGTCCTCTGCTAATCAGAGACAAATTCAATCAATGACTGATTTTT

Function

GO:

id name namespace
GO:0071203 WASH complex cellular_component

KEGG:

id description
K18465 MRT43, SWIP; WASH complex subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118902 lncRNA downstream 80 27060552 ~ 27061136 (-) True G88274
TU118898 lncRNA downstream 4284 27055670 ~ 27056932 (-) True G88272
TU118856 lncRNA downstream 57031 27003091 ~ 27004185 (-) True G88245
TU118854 lncRNA downstream 57031 27003584 ~ 27004185 (-) False G88245
TU118857 lncRNA downstream 57710 27002954 ~ 27003506 (-) False G88245
TU118942 lncRNA upstream 92155 27169988 ~ 27170267 (-) True G88305
TU119051 lncRNA upstream 279246 27357079 ~ 27358179 (-) True G88380
TU119052 lncRNA upstream 281963 27359796 ~ 27362901 (-) True G88381
TU119063 lncRNA upstream 299026 27376859 ~ 27378018 (-) True G88391
TU119077 lncRNA upstream 342604 27420437 ~ 27424635 (-) True G88405
XM_039807775.1 mRNA downstream 10389 27049172 ~ 27050827 (-) True lrrc10
XM_039807767.1 mRNA downstream 17343 27034049 ~ 27043873 (-) True fnbp4
XM_039807768.1 mRNA downstream 17350 27034049 ~ 27043866 (-) False fnbp4
XM_039808585.1 mRNA downstream 27617 27024719 ~ 27033599 (-) False agbl2
XM_039808580.1 mRNA downstream 27901 27018697 ~ 27033315 (-) False agbl2
XM_039810046.1 mRNA upstream 58023 27135856 ~ 27143311 (-) True etfbkmt
XM_039807389.1 mRNA upstream 113082 27190915 ~ 27202925 (-) False si:ch73-62b13.1
XM_039807387.1 mRNA upstream 113082 27190915 ~ 27198012 (-) True si:ch73-62b13.1
XM_039807388.1 mRNA upstream 113082 27190915 ~ 27197735 (-) False si:ch73-62b13.1
XM_039807473.1 mRNA upstream 146129 27223962 ~ 27229372 (-) True zgc:153031
TU118864 other downstream 46805 27013237 ~ 27014411 (-) True G88249
TU118702 other downstream 386333 26673843 ~ 26674883 (-) False ptprjb.1
TU118402 other downstream 1464455 25596353 ~ 25596761 (-) True G87897
TU118279 other downstream 1995728 25064752 ~ 25065488 (-) True G87803
unassigned_transcript_380 other downstream 3145310 23915834 ~ 23915906 (-) True trnar-acg_18
TU118971 other upstream 146219 27224052 ~ 27228966 (-) False zgc:153031
TU119050 other upstream 277139 27354972 ~ 27355776 (-) True G88379
TU120007 other upstream 3644275 30722108 ~ 30722503 (-) True G89085
TU120195 other upstream 4165335 31243168 ~ 31250413 (-) True G89241
TU120334 other upstream 5028790 32106623 ~ 32108066 (-) True G89365

Expression Profile