RNA id: XM_039808778.1


Basic Information

Item Value
RNA id XM_039808778.1
length 2240
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC120564089
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 12252584 ~ 12258264 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTCATTTTGTCTTTGAGTTTCCTCCCCGCAGAACCCAGCAGTCGCAGTCAACTCAGAGACGTCCACCATGCAGATCCGCGCAAAACAAACTTTCTTCCTTCTAACGTCTGTGTTATTTCTGGTTGTTGCTGCAGCAGACCTACTTGCTCCTGAAGTCCACACAAAGCTGGGCAGCCTGAGCGGTCAGTATGTGAGTGTAAAGGGGAAGGAGCCTGGGGTCCATGCCTACCTGGGTGTACCGTTTGCCAAGCCACCCATAGGCCCCGCTCTGAGACTGGCTGCACCCCAGCCTGTAGAGGGATGGGAAGGAGTGAGAGATGCCACCCAGCAGCCATCCATgtGTGTTCAACATAAACAGTTCTCTTTAGATCTGTTTGATAAACTTGGTCTCATGTTGGTAGATCTCCCAGACATTTCAGAGGACTGCCTTTACCTCAACATTTACACTCCTGCAAACAGAGCTCACGATGCCAAGCTCCCAGTCATGGTCTGGATCCATGGTGGAGGGTTTTCTATGGGGGCAGCTTCAATGTATGATGGCTCCGCCCTGGCTGCTTACCAGGATATGGTTGTGGTTCTGATCCAGTACCGCTTGGGACTTCTGGGCTTTctcagCACTGGAGATGAGCACATGCCAGGGAACGTTGGCCTGTTGGACCAGGTACAAGCTCTGAGGTGGATTCAGCAGCACATTCACAACTTTGGAGGGGACCCAGATTTAGTTACCATATTTGGGGAGTCTGCTGGCGGAGTGAGCGTATCCCTCCTGCTTCTCTCGCCATTGTCTGTTGGCCTGTTCCACCACGCTATTGCTGAGAGTGGCACTGCTGCGATGGATATACTCATTTCAAAGGATCCTCTATCAGTGATGCAGGTGGTGGCAAATGTATCTGGCTGTAGCCTCGAAAGCACAGAGAAGATGGCAGATTGCATGAGAAATCTCAATATTAACACTATTGTGGCTATTGCGCAGGATGAACGATTGAGAATTTCTGTAAATATTGATGGACACTTCCTGAGAAAACCTGTGGATGAGCTGTTCCATACACGTGAACTTCTAGTGGTACCATTTATGACTGGTGTTAATAATGATGAAGGGGGCTGGTTACTTAACAATTTCTTTGCTCCTGCAAACTGGACAGAGGGATTAGACCGGGAGCAGCTGTTGAACATGCTGTCCCTGTTCTACCCTGATCCCAAAGATGCATTCTTCAGAGATTTGTTTGTAGATGAATATATTGGAACCGGTGAAGATCGAGAGAAAAATAGAGATGTGTTCACTGACTTGCTTGGAGATATGTTGTTCACCATCCCAGCCATCAAAACCGCTAATGCCCACCGAGATGCAGGTGCCCCTGTATACCTGTACGAGTACCAGCATCCACCCAAATTCCTGCAGGCAAAAAGGCCAAGCTTTGTTGGGAGTGACCATGGCGATGAAATTTTTACAGTATTAGGATTTTGCTTCACAACTACCCATATCAAATTAGCCGAATCATGCGATGAAGACGAGGAAGAGTTGAGCAGAACCATGATGAACTACTGGGGGAACTTTGCTCGCACAGGGTCTCCTAATGGAGGCGGCCTTGTCCACTGGCCAAAGTATGGAGCAGAAGAAGACTACTTGTTAATTGATGTAAAGGAGCAGGTAACTGGTCAGCACCTGAAGAAGGAGCGCTTCGTCTTCATGACCCAGACTCTCCCGGAGAAGATCCGACAACACAAAGAGAAAACGGAGCGCAGCGAACTGTAGAACATACACCTCTTCTTTCTCCCTTCCatcattttctttccttttattgaTTCCATCTTTAACCAGAAATAAGTCTGTTGACAATGCATAAGACATATTGAGACATTTGTTAAACTAATGTGATGGTAATAATATTTTAACAAAGTTCTTGTGTAGCCTATACAAATGAATTGTATGAAATTTGAAAAGGAAATTTTCTAAGCTCACAATTGAACTTAAAAAGCTGTGTGATGTTGTAGTAGCATGTGAAAAATTAAGGTTGGGTGAATAATTTTTATAGCCACTGTGTATATTGAACATCAGTTTGAATCCAAGGTAAATAGCTTCAGGGAATACCTCTTTAAAATCCAAAAGCCCAACAGGAAATATGTAACAGAACAGCACCGCAAGTCTTGGATGCCCCTACCGTGTCTGACCACATATTTAATATCTCCTTCATAATCTGGATtccaatataaaataaaaatctaaatgttttaCCATTCA

Function

GO: NA

KEGG:

id description
K03929 pnbA; para-nitrobenzyl esterase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113270 lncRNA downstream 47053 12205241 ~ 12205531 (-) True G84130
TU113268 lncRNA downstream 51749 12177943 ~ 12200835 (-) True G84129
TU113265 lncRNA downstream 82389 12169668 ~ 12170195 (-) True G84127
TU113253 lncRNA downstream 82937 12160379 ~ 12169647 (-) True G84118
TU113250 lncRNA downstream 89564 12157250 ~ 12163020 (-) True G84115
TU113401 lncRNA upstream 322339 12580603 ~ 12613276 (-) True G84236
TU113414 lncRNA upstream 428770 12687034 ~ 12687287 (-) True G84244
TU113413 lncRNA upstream 429219 12687483 ~ 12688635 (-) True G84243
TU113491 lncRNA upstream 572092 12830356 ~ 12834571 (-) True G84294
TU113522 lncRNA upstream 627399 12885663 ~ 12885917 (-) True G84320
XM_039809532.1 mRNA downstream 910215 11265168 ~ 11342369 (-) True cspg4
XM_039809719.1 mRNA downstream 1037091 11205454 ~ 11215493 (-) True snupn
XM_039808176.1 mRNA downstream 1053119 11173553 ~ 11199465 (-) True ptpn9a
XM_039807907.1 mRNA downstream 1084921 11148431 ~ 11167663 (-) False sin3aa
XM_039807908.1 mRNA downstream 1084921 11150157 ~ 11167663 (-) False sin3aa
XM_039807863.1 mRNA upstream 295219 12553483 ~ 12563363 (-) False kras
XM_039807861.1 mRNA upstream 295244 12553508 ~ 12563371 (-) True kras
XM_039807860.1 mRNA upstream 295244 12553508 ~ 12563369 (-) False kras
XM_039809860.1 mRNA upstream 327047 12585311 ~ 12587491 (-) True bhlhe41
XM_039809584.1 mRNA upstream 342117 12600381 ~ 12660168 (-) True itpr2
TU113260 other downstream 108038 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 364186 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 1589906 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 1820440 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 2072587 10174824 ~ 10179997 (-) False tdg.2
TU113814 other upstream 972353 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 1315567 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 1772840 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 1964986 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 2243696 14501960 ~ 14507201 (-) False LOC120563775

Expression Profile