RNA id: XM_039808787.1


Basic Information

Item Value
RNA id XM_039808787.1
length 6246
RNA type mRNA
GC content 0.45
exon number 17
gene id sema3e
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14642838 ~ 14667500 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcagGACAATCTAGAAGAAGGAGCAGCCAATTTTCAGCCCTTCAAGCTGATACACACTCCCCTCATTACGAACCACACAAACAGGCTTTtcctctcacacatacacaccacacctTGACAGGTGGCCTCTGCCCAGATCAGTAGCTGTGGTAGAAGCCATCTTAACTGACTCACTGAGGTTTGAGCTGAGGTTTGGATCCTCTCTGACTGTTCGAGCGTGAGCAGAGTTAGGAGAGCTCAAGCTTCACTTTCTTCTCCAGTGCAGAGAGACGGCACGCCAGGCACGAGGCTCCCcactcctcccctctcccactcTGCCTTTTTGCTGGGCTCCAGTCCAGAGAATGACTGGCTCCAGTGGACCCAAGAGGAACACAGCCTGAGGATACAGTACAGCAGCTCCAGCCTTGCCTGCCTGCCCGCCTGCCTGCTGGGACACAAATGCACTGAGGTTTTTACAAATCATCTCCAACACCTTTCCGGGattcagatttctttttttttttctgtcatcaGGTAAGAAAGACTGTATCTAAGCTGGgcatacagacagacaaacaaacagacggACTGACATATGGACAGAGAGCAGTGGGCACTGCGGCGTGAATGTAGCAACTGGACTTCTCTTCTCCCTGGTTACTAAGACCAAACAAGGATAACAGCCAGAGCACTGTCCACCGAGGTAGTGGGTGGATGCAGCTTTCATCACACGGCTATAGGGGAACGCAGATACTGTATAGAAGCTGCAGAGTATCTAGTTGATCCTCACTGTGGTGATCGTCAGAAAATGGACTGTTACCTCCAAGTAGACTTTTGTTGGATTGCTATCTCTTATTAAATATTGTTTGCAGGAACTTGTAGGGCAAAGACTTTTTTTCTATTCATGGACTTTGCTGCCCGTGTTGAGTGGACTTGCAGGATTTCGGTGTATATGAACGTGGAGTGTGTGTCTCAATGAGGATGGCAGAGTGCATAAGGACTGTGTATCTGACACTGATGCTGCTGTATCTTGTTCTGCTGGGCACGGCTCACACAGTCCACAGCGTATACCCAAGGATACGGCTCTCCCACAAAGAGCTTTGGCAGCTGAACAGAACCTGGGTGTTCCAGGGACACGGAGCGTCTCTTCAGCCCCAGACCATGCTTCTGGATGAGGGCCACGAGAGGCTTTATGTTGGGGCCAAGAATACTCTGTTCTCCCTTAGCCTGGACCGGgtcaacacacaccacagagaaattcAGTTTGCCAGTACAGAATCTCAGATCCAGGAGTGTTTGATGAAGGGAAGGGATAAGTCGGAGTGTGCTAACTACATCAAGGTTCTGCAACAGTACAACCAGACCCATTTGCTGGTCTGTGGAACAGGAGCCTTTAACCCCGTTTGTGTCCTGGTCAGAGTGGGACATGCAGGGCGGGACAGGTTTGCTCTTGAAGAAGACAGTATCATGAGTGGCAGAGGACGCTGTCCATACGACTCCAACAGTCCATGCACGTCTACGCTCTCCAGAGGAGAGCTGTACATTGGCCTGTACACTGACTATTGGGAAAATGATGGTGCTTTTTGTCGACTTAACAACCAGACCTACACACGCACTGAGAGAGACGACAGGCAGCAACTAAATGAACCTAAATTTGTGGGGTCAGCGGTTATTCCAGACAATGATGACAGGGATGATGATAAAGTTTACTTCTTCTTCACTGAACGAGAGATTGATGCTGAGGGAGTGAACAAGGCTGTGTACACTCGTGTGGGGCGAGTCTGTGCGAATGACCAAGGAGGACAGAGAATGCTCGTGAATAGATGGAGCTCCTTCCTGAAAACTCGTCTTATCTGCTCTGTGGCTGGACCAAATGGCATTGACACACACTTTGATGAACTTGagGATGTGTTTGTGCTCAAGAACAAGGATGGAAAAAACCCAGAAGTCTTTGGCCTCTTTAGCACAACAAGTGCGGTGTTTAAAGGCTATGCAGTGTGTGTCTATCACATGGATGATATAAGAGCAGCCTTTAATGGTCCATTTGCATACCGAGAGAGACCTGAGCATCACTGGACACCATATGAGGACAGAGTCCCCTACCCTCGCCCTGGATCTTGTGCCAGTAAAGTGAACGGCGGTGGCTTTTCCAGCTCCAAGGAGTTTCCCGATGAGGTTTTGCGGTTTGTGCGCTCTCATCCTGTGATGTACCGTCCAGTCCTTCCCCAGCACCGTAGACCTGTCCTGTTGCAGACAGAGCCAGGCAGAAGAAAGCTGACCCAGATCGCTGTGGACCGAGTCCAAGCCCAGGATGGACACTACCATGTTCTCTACATCGGCACtgACGACTCAGTGGTGTTGAAAGTTATCACCATCTACAACAAAGACACGGACACCATGGAGGAGGTGCTGCTGGAAGAGCTGCAAGTATTCAAGGTGCCAGCACCAATAAGAGAGATCATAATCTCACCTAAAAGGCAACAGCTGTATGTCGGGTCAGAAGTGGGTGTGGCTCAGGTCAGACTGCATCAGTGTGACCTCTATGGCTCAGAATGTGCTGATTGTTGTCTGGCCAGAGACCCCTACTGTGCCTGGGATGGTCTAACCTGCTCCAGATACTACCCTGCTGGAGTTTACACCAAAAGACGATTCAGGCGGCAGGATGTTCGCCATGGCAACGCCGTCCAGCTGTGCAATGGGCTGCAAATTGATGatgaacAATGGCACAGAGGTGAAGAGAGGCTGGTGTACGGTGTGGAGAGCAACAGCACTTTACTCGAGTGTGTCCCTAGATCACTCCAAGCAAAGGTACTCTGGTTCTTACAGCAAGACGGAGAGAAACATGAGGTTCGAGGTGATGAGCGGATTATCATGACCTCCCACGGGCTGCTGTTTTTACGAGTGAGAAGCTCGGATGCTGGTGTGTACGTTTGCCAGACTGTGGAACATGGATATGTGCACACATTATTACGCATCTCTCTACACGTGCTCAGAGGGGAGAGGGTGGAGTCAGCGATCCACAGGGCTAATGATGGGGATGGAGAGAAAGCTGCACCTCCATGCCACTCCTCTATGGGCCACTCACCAGGCCCCAGCATCAGCCCCAGGGCTCTGGTGCCATCCTCAGTCCCAGGCCCCCATTCCAGGCTGTGGTACAAAGAGTTTCTCCAGCTGATTGGCTATGGGGATGCCCAGAAAGTAGAGGAGTACTGTGAGAGAGTGTGGTGCTCTGATAAAAAACGTAAAAAGACCAAAAGGAAGTATGTTCCTCCGGGTGGCGAGAAGAaagggaaagggagaggagaggataaCTCCCACCGAGCGCCCAGGCACACCTTGGACACCTGAGGAGAATAGAGATTGActgctcacgcacacacacacccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacccacacacaaacacacacacacacagtctaaaGGTCAGACTTCCTCAGTGTTTGCACCATGTCAAAGGTTTTCACAGTGAAAGACATGTGTAGCAGGCTGTCTAGCTGTTGTAGCTACATTTATAGTATCAGTAGTTTGACTATGATGtttgtatgttatgttatgttattttaaaaagcaactttttggcttttttgtgTGGTGTAAACTGATTATGCGGTGCAAACCCAGGGTAAATACAATATATGTCAGTGTCAGAGCAGAGGGCCTGGGAAGAGATGGACGACTGATTTAGCGACGTTGCCTCTGATCTGAGAcagaatataatatattagCTCCTGTGGACTGACCCAGCCCAACCCAGCTGTCAATCCAAACGCACACAGAGACTTGCTACACTAAAACTATGCCCCACCTCTCATTCAATGGCTCAATATGACAAACTCTTACTGTATCTATTATGAGAGAAACTATGTTAAAGGTAATGGCCTTCTAATCTTTTTTGGTACTATGATAACTTATTTTCTTGGTCTCTACTTTGAGTTATGTAGTTGTTTTTAGATGTCATGAACTGGAAAATATAGTGTTGTTTTTGTACAGTGGAAAATGCCTTGAGCTTTATTATACTGATAATTTGATTATAACAtggctgtggtgtgtgtggttataATGGCCACAATGCATACAGTAAGATGTTGCAATGCCACTATTATGGATATTTGAGGGATGTTTTAAGTATAAGTATGCCCTCAATGGAAATAATTACTATTTAAGCACTTGTGAAAACAGTAACAGTAGTATGAAAAGTGGTCCTATCAGtatatattattgttattgttaagtGTGTACATTTACATCTACAATTGTGATCAAATGTACCAACAggattgtgtattgtgtattgtatttatctCAATTTAGGGTGGTCTTTGTGTGTACTTCTGGTATCTATTACTGTGTATACAAAAAGTCATCCTTCACTGCTGGCTGCTCCCTCCTCTTTCCCTATTTCTCCCTCTCTTACGTGTTCTCCCTATCTCCCTCTATCACCCTTTCCTACCCCTTCATTTACCCTCTTTTGTTCATCTGTAATGATGTTGCAGATGGGATTCATAATTACAACACCACATTCCCTTCAgtagaaaaaaacatacaaataaatgttAGGGTGACCATCCAAGCATGTCATTAGCAAAAGTGATGAGTCAGCCTGATGCATATTCAGTTAatcctaaaatgacagaaacatcaAAGAATTTGATGTTACAGTGAAATGCATTGTAGTGGTTGTGCTAACAATAGAGTCTGGAGGATCACCTCTTTTTCAATGTTGTGCCTTATTTGTCACTTTAGAAATTTGACCTTGTTGTATTTCTCATTATCATAATGAGGTAAAAACAATCGCTTGGCCTTATAGTGTCATTCTCCTTGAATATTCTTCAACTAAGAGCTTTGACTTGGATTGAAAATGCTGTGTCTGCTATACCTCTTATAAATACCTGCCATTAAAAAATGATGGACCATCCTTCCCTCGTGTCACCTCTGTGGTTTAGCCAACAGTAATGACAAAGTATACTCAGTCCACgtccacacacagacatattgaGAGTCCGAGCCAATGAAGCGGAATAAAATGAGGTTGGGAAAGAGCCATGTGCAGTAGTCACTTAGATTAAAACATAAATTTTCAtatgtaatattttattttattgggtAACTACTGTAAACATGATTAAAAAAGTTGCTATGTTTCCTAGTATTGTAGAATGGTCCATATGCTGGTGAAATACAAAGTCTAGTGTAACTGGTAAGGACTGGTTATACTTTTTTTAACTGTGCACTAGGACACCACACTCATTCAAATTCTGTGTAGGTCTACCTGAGTCAGTGGGGTGCTGAAGGCATTTGAGAATGGAATTCATCTTGCTGATATATTCCACATGGCTACCATAGCAACAGGCTCTGAACCAGTTCAGTTCTCCTCCTCAtcaaagctctctctctctctctctctctctctctctctctctctctctctctccctccctctctctctgtgtcaagTTTTAACACTGTTACTCTGGCCACTGGGCCCCCTCTAGTCATGGTCCCTGTAGCCACTAATAGATCATACTCTAATGTATACTGGTCCTCTTAGTTAAGCTTAAAAGTGCCTTCTTTTCTGCAGGGATTGAAGCTGGCATTTGCCTGCTGGATGGAGCTTCTGATCCCACAGTAACATGCCATTTGGGAACAGATGCAAAAATAGAGATTCATTTGGAGCTGCACATATTTTCTTCTAGACATCAATCATTTTGAGGTTCAAGAGGTCAATAAGAGGtaatgaaatactgtaaatccaTTCAGCAACAAAGAGAttaaaaggtcaaaggtcactaaTAAACAGGCTGCTGTACATGTTTCAGTCACTGTGTGAAGATGACAGTGATTATCCTTTTCCTCTATTGGCACCCATCTCCTCTTTTTCCTGCCGCCTTTGTTATCCCCACGTTGTGCTGTTTCTATCAGGAGCCAATGCACCAGAACGCTTTATTACAAGTGAAAAtgtcagagagagaaggagagttTATGAGGCGGAGGAAAATGAACATTGGAGGACAAAGAGTAAACGAGCCTCGACAGCCAGTAACACTCCACATGCTGTCAGTGTGAACagtatattgtgtgtatgtgaacaCGTTTTGGCGACTTTTTTGGGGTTTGCATACAAGTCTTGATGGTAAATAAGAATAAAAGCACGGCAAATAGAaa

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114412 lncRNA downstream 75569 14558458 ~ 14567269 (-) True G84960
TU114175 lncRNA downstream 277440 14365192 ~ 14365398 (-) True G84776
XR_005640087.1 lncRNA downstream 357876 14283896 ~ 14284962 (-) True LOC120564348
TU114161 lncRNA downstream 377852 14264725 ~ 14264986 (-) True G84762
TU114159 lncRNA downstream 379097 14263416 ~ 14263741 (-) True G84761
XR_005640144.1 lncRNA upstream 139911 14807411 ~ 14808068 (-) True LOC120564774
TU114433 lncRNA upstream 184220 14851720 ~ 14852023 (-) True G84971
TU114375 lncRNA upstream 286628 14954128 ~ 14955407 (-) True G84948
TU114376 lncRNA upstream 286628 14954128 ~ 14955407 (-) False G84948
TU114472 lncRNA upstream 390225 15057725 ~ 15057929 (-) True G85007
XM_039808184.1 mRNA downstream 10535 14617291 ~ 14632303 (-) True LOC120563776
XM_039807761.1 mRNA downstream 25480 14572731 ~ 14617358 (-) False LOC120563540
XM_039807760.1 mRNA downstream 25480 14572731 ~ 14617358 (-) False LOC120563540
XM_039807759.1 mRNA downstream 25480 14572731 ~ 14617358 (-) True LOC120563540
XM_039808182.1 mRNA downstream 84610 14501896 ~ 14558228 (-) True LOC120563775
XM_039808785.1 mRNA upstream 15947 14683447 ~ 14708118 (-) True sema3ab
XM_039809864.1 mRNA upstream 90479 14757979 ~ 14795130 (-) True sema3d
XM_039809865.1 mRNA upstream 90479 14757979 ~ 14795129 (-) False sema3d
XM_039808414.1 mRNA upstream 235673 14903173 ~ 14919276 (-) True elapor2a
XM_039808185.1 mRNA upstream 294360 14961860 ~ 14967783 (-) True si:ch1073-390k14.1
TU114408 other downstream 135637 14501960 ~ 14507201 (-) False LOC120563775
TU114145 other downstream 405886 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 609623 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 1024942 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 1411743 13230617 ~ 13231095 (-) True G84530
TU114449 other upstream 298955 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 398539 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 811482 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 847278 15514778 ~ 15544082 (-) True G85133
TU114908 other upstream 1771874 16439374 ~ 16440965 (-) True G85321

Expression Profile