RNA id: XM_039808831.1


Basic Information

Item Value
RNA id XM_039808831.1
length 2068
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC120564117
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 18583257 ~ 18592810 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATTGCACATCAGCCAGCGGTCCAGGATATACTGTACACCGATTGGCCCAGAAACCCTCGAATGATCGGCTCGGAATTTGTACTGAATGAGTGGGTGAATGAGTCCGTGAACATTTTAGGCAAGACAAAAGGATGATTTTTTGGGATGATTACTATTTAAAATGGGTCTAAACGGAACGAGAGCAAATAAAGTGAGCCGGCGTGTTAATGTGACTGAAACCCGGGGAGAGTAGCCAAAATCTGGATACTGTGTCAAAGTTTGTAGCTGACTGGCCCTTTAGTGTGCAGGTGGACCCAGGCCAGAGACAGCAGTGAGGATGGGAGGTGGAGGCCAGCTAACGGAGCCAGAAGAGCCGATCAGCGGGCGAGCTGCTGGTGTCTACACCTGGGAGGAGGTGCAAAGCCACTGCAACCGGAATGACCAGTGGCTGGTGATAGATCGAAAGGTTTACAACATCACACAGTGGGCCAAAAGACACCCAGGAGGGATTCGAGTCATCAGCCACTATGCTGGAGAGGATGCCACGGAGGCATTCACTGCTTTTCATCCAGATTTAAAGTTTGTGCAAAAGTTTCTGAAGCCGCTGCAGATTGGAGAGCTGGCAGCGACAGAGCCCAGCCAGGACCGAAACAAAAATGCAACCATCATACAGGATTTCCATACTTTACGTGCTCAGGTGGAGAGCGAGGGTCTGTTTCGAGCTCGGCCTTTGTTCTTCTGCCTCCACCTGGGTCACATCCTTCTGCTGGAGGCCCTCGCCTGGCTGATCATCTGGGTCTGGGGAACTAGCTGGACTCTGACCTTTCTGAGCGCCGTCATATTAGCAACCACTCAGTTGCAGGCTGGATGGCTGCAGCATGACTTTGGCCACCTGTCTGTCTTCAAGAAGTCCAGCTGGAATCACTTGTTGCACAAGTTTGTCATTGGTCATTTGAAGGGAGCGTCTGCCAACTGGTGGAATCACCGGCATTTCCAGCATCACGCTAAACCCAACATCTTCAGTAAGGACCCTGATGTCAACATGTTGCACGTCTTTGTAGTTGGAGAAACTCAACCAGTGGAGTATGGCATAAAAAAGATCAAATATATGCCTTATCACCACCAACACAAGTACTTCTTTCTCGTTGGCCCACCGCTTCTCATTCCAGTTTACTTCCACATTCAAATAATACACACCATGATTTCCCGCCGCGACTGGGTGGATCTGGCTTGGTCTTTGTCTTACTACCTGCGCTACCTGTGCTGTTCTATACCCATGTTTGGCCTGTTTGGCTCAGTGGTGTTTATCAGCTTCATCAGGTTTTTGGAGAGTCACGGGTTTGTGTGGGTGACTCAGATGAGTCATCTGCCCATGGACATCGACCACGAGAAGAACCAGGACTGGCTGTCCATGCAGTTACAAGCCACCTGTAACATAAAGCAGTCCCTCTTCAACGACTGGTTCAGCGGACACCTCAACTTTCAAATCGAACACCATTTGTTTCCAACAATGCCGCGCCACAACTACCACCTGGTGGCCCCGCTGGTCCGCGCACTGTGTGAGAAACATGGGATTCCTTACCAGGTGAAAACATTGTGGCAGGGCTTCGCTGATGTTTTCAGgtCACTGAAACACTCAGGCGACCTCTGGCTTGATGCATATCTGCATAAATGACAACTTTTATTCTTTGCACAGTACCTACAAGGACTGATGTGTTTTCCTCTCATCTGCATTATACATTGATTGTATCTGTTTGGTTTTATAATCCAGTTAATAGTGTGGGATTTATCTTTTCCTAGTGTTGGTGTTATAGTTCAGTTTTTTCAGATTCTGTGCCAGATTTTTAGTGCTCACAGGATTTCTCTGATTTGCCTTACGGTGTCTTGAACAACAGTAGTATGGCGTTATATATACAATTGTGAAAAGTGATTGTCAGATATTTAAAGTGATGTTTTTTCATTATCAATCATGTGATACAGTTTGAACAATAAAATATGACAATTACGTGGACAAGTGACAAATCCAGTGTAATTGAGGATTATTTAAAGTTACTGtacttaatttacaataaaatctGCAGTTACCAA

Function

GO: NA

KEGG:

id description
K10226 FADS2; acyl-CoA 6-desaturase (Delta-6 desaturase)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115714 lncRNA downstream 238916 18343542 ~ 18344341 (-) True G85910
TU115589 lncRNA downstream 566483 18016107 ~ 18016774 (-) True G85815
TU115571 lncRNA downstream 626628 17893907 ~ 17956629 (-) False dennd4a
TU115567 lncRNA downstream 690790 17888867 ~ 17892467 (-) True G85806
TU115832 lncRNA upstream 21779 18614588 ~ 18627153 (-) True syt7a
XR_005640064.1 lncRNA upstream 82454 18675263 ~ 18677985 (-) True LOC120564122
TU115929 lncRNA upstream 164243 18757052 ~ 18761076 (-) True G86064
TU115939 lncRNA upstream 174686 18767495 ~ 18769138 (-) True G86072
TU116127 lncRNA upstream 418116 19010925 ~ 19012081 (-) True G86195
XM_039808830.1 mRNA downstream 13245 18561286 ~ 18570012 (-) True fads2
XM_039808641.1 mRNA downstream 54906 18506327 ~ 18528351 (-) False myrf
XM_039808643.1 mRNA downstream 54908 18504256 ~ 18528349 (-) True myrf
XM_039808836.1 mRNA upstream 10294 18603103 ~ 18606583 (-) True ppp1r32
XM_039808838.1 mRNA upstream 26114 18618923 ~ 18696098 (-) False syt7a
XM_039808839.1 mRNA upstream 26114 18618923 ~ 18657394 (-) False syt7a
XM_039808840.1 mRNA upstream 26114 18618923 ~ 18648093 (-) False syt7a
XM_039808837.1 mRNA upstream 26114 18618923 ~ 18648087 (-) False syt7a
TU115790 other downstream 80391 18499328 ~ 18502866 (-) True tmem258
TU115791 other downstream 80391 18499328 ~ 18502866 (-) False tmem258
XR_005640159.1 other downstream 151122 18432040 ~ 18432135 (-) True LOC120564822
XR_005639940.1 other downstream 535418 18042257 ~ 18047839 (-) False lctlb
XR_005640156.1 other downstream 548258 18034901 ~ 18034999 (-) True LOC120564819
TU115837 other upstream 52717 18645526 ~ 18648084 (-) False syt7a
TU116123 other upstream 414387 19007196 ~ 19010916 (-) False G86194
TU116124 other upstream 414387 19007196 ~ 19010916 (-) True G86194
TU116306 other upstream 722626 19315435 ~ 19317410 (-) False arpp19b
TU116428 other upstream 795013 19387822 ~ 19388575 (-) True G86402

Expression Profile