RNA id: XM_039808848.1


Basic Information

Item Value
RNA id XM_039808848.1
length 4247
RNA type mRNA
GC content 0.51
exon number 14
gene id pamr1
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 25302836 ~ 25387312 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATAAAACGGTGGAGCCTGCATTCATTCAAGAGCAGTGACGTCGTCCTCTGAGTGGAGCGAGGGGAGTTTTTGGGAGACCACTGCAAGTGAAACTCCTTGCGAGGCTGGGCTGTAATCTGAAGCCAAGaagaagtgagagagagagagagaaattttagagagaaaaagaaagggagagagacagagggaggggggagggaagaACTGAAGGGCCAAGAGAAGGTGATGTCAGCTGAGTTCAGAAAGTAAACAGAGTTCCAGACTGCAGCATGCTGTCTGCGGGACGGGGACTGCAACTGGGACAAACCCATGGGGGCGCCCACACAACCCCCTGGACCAGCACCTTTATCTCTTGCAAGGAGGGCTGGTTCCTCTTCATCTCCCTCTTCATCTACTTACCTCAAGTGACAGCCTGGCCCTACGATTACAGGTATTTATACAACCACTGCCCGGGCCCAGACTGGAACGTTATGTGCAGAGGCTGCTGCGAGTATGATGTGATCCGCTGTAAATGCCCCCTACAGGGGACTCCAGTGGGCTACGCGGTGCCCTGTTGCCGCAACGCCATAAATGAGTGTGACCCCTGCATCATCCATCCAGGTTGCAGTATATTTGAGAACTGTAAGCGCTGTAACAATGGGACATGGGGCCCCAGGGATGACTTCTTCATTACTGGCAAATACTGCGCTGAGTGTCGGCCTGGCTGGTCTGGGGGAGATTGCATGAAGTGTGGGGGAGTGATCCGTAAACAGCAGGGCCACTTGGTGCTCGAGAGCTACCCCAACAATGCTCGGTGTGAGTGGACCATCCAGGTGGACCGTCCCTTTACCATAGAGCTCAGGTTCATGATGATGAGTCTGGAGTTTCACCATTCTTGTCGTTATGACTACGTGGAGGTCCGAGATGGTGATAGCATCAACTCGCGTGTTATCGCTCGATTCTGTGGGAACAACAGACCTGCACCGGTTCAAAGCTCCGGCAACAGTTTGCACATACTCTTTGTGTCTGACGGTTACAAGAATTTTGATGGATTCTTTGCCACTTTCCAGGAGAGCTCAGCTTGCAGCTCTTCTCCTTGCCTGCATGATGGGACTTGTATCCTGGACAGTTCTTACACTTACCACTGTGCCTGTCTGGCTGGCTACACAGGCCAGAGGTGTGAAAATGTGGTGGGATGCCGCAGGCCTCCAGTGCCCACCCATGGATCCACAGAGGGTTTGTTTCATCACTCGGGGGCACGCATCACTTTCCGTTGTGACCCTGGCTTTGAGCTGCGGGGGTTTCGTACTGCCATCTGCCTGAGTGACGGCACCTGGAGTGCTCCTGCCCCAGAGTGTGTGCCAGTGGAAAGAGTCTGTACTTTACCACCCAAGCCAACACACGGAGACCACTTCCTGGTTTACGGACCCAACGATGTCCTCATTGCTCTACAGTACCTGTGCTACCAGCCCTATGAACTCAGTGGGAGCTCCCAGAGAGCCTGCCTCCCTAACAACACCTGGAGTGGGACTCCTCCTGTTTGCATCCAAGTGAATAACACTCTCACTGAAGCGGAAAAGGACAAAGGCAAggcaaaagagacagaaaaaggcAAAGAAACAGATAGTGACAAAGATATCAGCAAAACTAAAGCGAAGGGTCAAGAGAACACAACTGGAGGAAACGAAAGTGTTGGAGGGAGCGATATGAACACTGGGCACGAGAACACAACAGCAGTTGACAGAGAAAATAAACACACTGGTACCATTCCAGAGAAGACTGTGTCTGAGGGTAGGAATGAAGGAGAGCTAGAGGAAAGAAATACTGGGTCAGAGAAACCCACTGGAGGCAGCAAAGATAAAGTGGATCGTGAAGGCTCAGACAACAGCCTGAATACGGTTGAACAGAAAGAACCTGACGTAGGAAAGCCACCTGAAAGAAAAGAAGGCAGCCCGGACACAAACTTGGAGACAGAAAAGACAGATATAACAGGAGTAGTTGTGATAAAAGACAAAGGGCaagaagggaaggaaagaaaagaggagcAGGTGAATGGAAAAAGAGATCCTGACAAAGTCGGCCCTAATGATACCAAGATGAGAACGGTCACAGTGGATATATTTGAACTGGAAATGACAAAGAACAACACAATTATACGTGACACGAAggacacaaagaaagaaaatagtacCATAAGTTCTCTAGAGCCAGGGAGGAAAATCCTTCCCACTAGAGTCAACATTACACAGTACACCATGTACAGAGCGGGAGGTGAGGAAAAATCAACAATTAAAGAGGATAAGACAGAGAAGGATTCTGCTGAGAAAACAAAGGAGACGCTGgaaaaggagagggaggagaaagaaaaggagagagaagtCAACCAAAGCTTTACCGAAAAAAGCTGCCCACCTCCCTCTCGCCTCTACCATGGCTACTACCAGCTGGTGTCTGGGGCGGAGCCTGAAACAGTGGAGTTCTTCTGCAACCACTCCTACGCGCTCAGTGGCGACGCGCGACGTACCTGCCAGCCAAATGGTACATGGAGTGGAAAACAACCCCTCTGTGTCAGAGCATGTCGGGAGCCCAAAGTGTCAGAGCTGGTTAGGCAAAGAGTTTTGCCACCTCAGGTGCCATCCAGAAAGACACCTGTGCACAAGCTCTACTCTTCTGGGGTGGGCCGACTGCTCCAGTCTGACGGCCCCACTAAAGGGCCTCCAGTGCTTTCCCAGTTGCCCCAGGGCTTCCACCACCTTTACTCACATATAGAGTATGAGTGTGCCTCTCCCTTCTATCACCACTCTGGCAGTTCTCACCGCACTTGCTTGAAGACTGGGAAATGGAGCGGGCGTCATGTGTCCTGTTCACCAGTGTGTGGGAAGTATCCGACCTTTGACCCAGAGAGGCCGGCAGAGGCTCACTGGCCTTGGCTGGCAGCCATCTACCGCCGCTCCACCAACGGAGCTGAGACCAAGGTGACCAAGGCAGACAGCCAGGCAGGGTCTCTGAAGGGGGACGTTGGAGCAGGAACTAGCAGGCACAATGCGGCTTCTGACTGGCAGCTGGTGTGCAGTGGGGCTCTGGTGAACCAAAAGAGGGTGGTGGTTGCAGCCCACTGCGTGACAGAGCTGGGGAAGGTGTATCCTCTGGATGCAGCCAAGATCAAGGTGGTGGTAGGGAAGCAGTACCGTGACGACCACAGGGAAAGTAAAGGTCTTCAACACCTGAGGGTGGCCTCTATTGCTGTTCATCCAAACTACGACCCCCATATTCTCGACTCTGACATGGCTGTGGTTAAGTTACTGGACAAAGCAAGGATCGGGGAGAAGGTACTGCCCCTCTGCCTCTCAGACAGCCAGGGAGAAGAGGTGAGCTCTGGGCAGGGGCTTGTGACAGGCTGGTCCCCACTGCCAGATTCAAGTTTAGGCCTGGATGAGAAGGCAAGGGTTGGACTCGTTCACCTCGCCGATGTAGTCCCCTGTGAGCAGCAGTACGCTCGTAACGGCGTGCCCGTCAGCGTCACAGACAATATGCTCTGTGCCAGCCAGAAGCCTGACTATGAACCCTCTAACATATGTCCCTCTGACACGGGGGGAATCCTTGTCCTCCCCGCCCTCTCTGAGAACCAGGCCAGCAACAACCAGAAGCCCTCTCTCAGCTTCCCACAGGTGCAGAGGGAGAGCAAAGGGCTGTGGAGACTCCTGGGACTGGTGAGCTTTGGCTATGACCAAGGGGAGTGTGATCCTGACCTCTACACAGTCTACACACGTGTAGCCAACTTCAAAGACTGGATAGAGAgcaatatgaaataaaagtcctaCTGTCTGACTCACCTTGTTCCCTCTATGATTCTAACATATTTAAATGGCTTCATATCTTAATGTCCTTCCccttatgtttgtttgttttttctttttctttcttgcaCAAGGACATTTTCTTACTCATTGCAGAAGCAGTGGAAACACTGGACAACACAGTGCTCTAACTGAAGGGGGTGCTAACACATTAGATGTGCTGGGCATCGACCTTTTCATCAGAAAACTTCAGTAATCAGGTCCCCTCAGCCTGATGTTACAGacttgaaaatgagcagaaaacCATTTCACGCCTCTGGCTGATGGTGGTTTCTATTGTACtcatttgtatgtatatatgttgtaaTGTACTGAATTATTATATCAATTCATATGACGCAAGAGATGTACATATTGTAtccaaagacagaaaaatcgtGACGTttttaatgaaagaaaaagTGGGGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640067.1 lncRNA downstream 74631 25181329 ~ 25228205 (-) True LOC120564148
TU118363 lncRNA downstream 85113 25216720 ~ 25217723 (-) True G87865
TU118291 lncRNA downstream 134509 25168076 ~ 25168327 (-) True G87815
XR_005640098.1 lncRNA downstream 188591 25112068 ~ 25114245 (-) False LOC120564398
XR_005640097.1 lncRNA downstream 188591 25112068 ~ 25114245 (-) True LOC120564398
TU118381 lncRNA upstream 20203 25351256 ~ 25354124 (-) True G87876
TU118388 lncRNA upstream 33515 25364568 ~ 25364775 (-) True G87883
XR_005640065.1 lncRNA upstream 94499 25425552 ~ 25496305 (-) True LOC120564131
TU118393 lncRNA upstream 111884 25442937 ~ 25444422 (-) True G87888
TU118484 lncRNA upstream 314693 25645746 ~ 25646956 (-) False phrf1
XM_039808844.1 mRNA downstream 8879 25269113 ~ 25293957 (-) False slc1a2b
XM_039808847.1 mRNA downstream 24136 25262241 ~ 25278700 (-) True slc1a2b
XM_039808846.1 mRNA downstream 24363 25262241 ~ 25278473 (-) False slc1a2b
XM_039808843.1 mRNA downstream 24363 25268884 ~ 25278473 (-) False slc1a2b
XM_039809944.1 mRNA downstream 484377 24765416 ~ 24818459 (-) True LOC120564736
XM_039807494.1 mRNA upstream 285308 25616361 ~ 25617983 (-) True ascl1b
XM_039808532.1 mRNA upstream 299723 25630776 ~ 25647000 (-) True phrf1
XM_039808974.1 mRNA upstream 320699 25651752 ~ 25688678 (-) False rassf7a
XM_039808973.1 mRNA upstream 320699 25651752 ~ 25688678 (-) False rassf7a
XM_039808971.1 mRNA upstream 320699 25651752 ~ 25674731 (-) True rassf7a
TU118279 other downstream 237348 25064752 ~ 25065488 (-) True G87803
XR_005640032.1 other downstream 1386634 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other downstream 1386634 23909169 ~ 23916202 (-) False LOC120563922
unassigned_transcript_380 other downstream 1386930 23915834 ~ 23915906 (-) True trnar-acg_18
unassigned_transcript_379 other downstream 1397663 23905102 ~ 23905173 (-) True trnam-cau_7
TU118402 other upstream 265300 25596353 ~ 25596761 (-) True G87897
TU118702 other upstream 1342790 26673843 ~ 26674883 (-) False ptprjb.1
TU118864 other upstream 1682184 27013237 ~ 27014411 (-) True G88249
TU118971 other upstream 1892999 27224052 ~ 27228966 (-) False zgc:153031
TU119050 other upstream 2023919 27354972 ~ 27355776 (-) True G88379

Expression Profile