RNA id: XM_039808856.1


Basic Information

Item Value
RNA id XM_039808856.1
length 3589
RNA type mRNA
GC content 0.61
exon number 11
gene id LOC120564132
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 3911044 ~ 3969786 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCAGCACAGGGATCAACCTGGAGGAGAGTCAAACTCGCTGCAACTGAACAGAAAACGCCGAACACAACAAGTTTACACAATAATGGGACTTTTCCGTGTTCACGGCGGAGTCCGTAGACATGTGTATTGACCGTGTCGGTGTCGGTTTACAACTTTTAACCGCGGAATTAGTCGACGTGTTTGTCGGCGCTGCTGTTGAAACGGAGTTCTGCTTTCTGTCGGATGGAAGTGAGCGAGACGGGTCGGTTTTAAGAGACAGACGAGCGCTATTAACGGCTCCGCTGTGAGGACAGTTGGTGtgtttttaggtttttttttttacagttcaaTGTCCACAGTAAACTTTGCGGAGGAGCTGGACTTCAGACTGGTGTTTGAGGAGGACGGCGGCGGCGGCAGACAGGCAGCAGGTCCAGAGCTCAATGTGAggactcctccctcctcctccactcagGCTCTGGCGGAGCAGCTGGTCAGCCCGGAGCTGCAAGGTCACCCTCCATGTTTCCCCTACCTGCTCTCCGGGGGCTACCAGCCTCAGGGGCCCCAGTACGGAGCCCAGGGGAACCCCAGAACCTTTGACTGTCCCAGTATCCAGATCACCTCCATCGCTCCTAACAATAATGTGGAGCTGGGCAGTAGCCAGGAAGCTTTGGCGGTAGGCGGGGCAGAAGGGGGTTACCCCGAAGCGTCCTGGTCCAGAGGCCAGCTCTACCTGCCCCTGGACCCTTGCTACCGGGACCCGGCGCTGTGCCCGAGCCCCTGCAGCAGCCTGTCCTCCCGGAGCTGGATATCCGACCTCTCGTCCTGCGAGTCCTTCTCCAACGCCTACGACGACGTGGAGGGGGAGCTGCGCGATGCCGACCGGCTCGCCCTGGGGTCCCCTCTCGCCCTGGGGTCCCCCGTCGGGTCGCCTCTGGGGTCTCCGGGCTGTGGGGGCGGGGCGTTCGGGGTGGAGCTGTGGCAACAGAACTACCAACATCCGTTAGCCTTCAGTCCGGTGCTGTCGCCCCATCAGTCGCCCCGCCAGTCGCCCTGCCACTCCCCTCGCACCAGCGTCACCGAGGAGAGCTGGCTGAGCCGACGGCCCACCTCCAGGCCGTCATCCAGACCGACGTCGCCGTGCGGGAAGAGACGCCACAGCGGTGCCGACGCCAACGCCCGCTCGCCGTCCCCTCACCACTCCCCCAGCCCCACGCCGGGCGCCTCCCCGCGCGGCAGCGTGACGGACGACACCTGGGTGGGGAGCCCCGGCGGCGTCCTGGGGTCCCTCCTGATGTGCGGTTACCAGGATCTGGACGTCCCCTCCAAGACCAGGAGGACCTCGGGGGCCCAGCTGGGCCTCTCGGCCAATCAGGGGGACCCGGGGCTGGAGCCCTTCCTGGATTCTCCCGGCGAGGACAGGCGCCAACAGGACGGCCTGGCTgatctcttcttccaggtgccGTCCCACTTCAGCTGGAGCAAACCCGAACCTGGGAACCCTCCTCTGTTCAGGAGCTCGTCTATGCCCCCTCTCGACTGGCCTCTGCCCAGCCAGTTTGACCAGTGTGAGTTAAAGGTGGAGGTCCAGCCCCGATCCTACCACAGGGCGCACTACGAGACGGAGGGCAGCCGAGGGTCCATCAAGGCACCTACCGGAGGACATCCTGTCATCAAGTTGCTGGGATACAGCGAGCAGCCGCTCAGCCTGCTGCTGTTCATCGGCACCGCGGACGAGCGCTGCCTCCGGCCGCACTCCTTCTACCAGGTTCACCGGGTGACGGGGAAGACGGTTACCACCAGCTGCCAGGAGAAGATCACGGGCGGCGCCAAAGTCCTGGAGATCCCTCTTCTTCCAGGCAACAACATGTCCGCCAGCATCGACTGTGCCGGCATCTTGAAGCTGCGTAATGCCGACATCGAGCTGAAGAAAGGAGAGGTGGATATCGGGAGGAAGAACACAAGGGTGCGGGTTGTGTTCAGGGTCGGAGTCCCTCAGCCGGACGGCCAGATGCTGTGGCTGCAGACGGCATCCAACCCTGTGGAGTGCTCCCAGCGCTCCGGCCAGGAGCTCCCTCAGGTGGAGAGCGCCAGTCCCGCCAGCTGCTGCGTGGACGGAGGAACGGAGCTGCTCATCACCGGATCCAACATCTCCACCCAGTCCCGCGTGGTCTTCATGGAGAAAGGGCCCGATGGAAGGTCGCTGTGGGAAATGGACGCCAGAGTTCTTCCTGaaaaatgtagcggaTCCAGCATCGTGGTTGAAGTCCCTCCCTACAATAAGAAGACGACCGAACCGGTCCAAGTCCAGTTCTACGTCTCTAACGGGAAGAGAAAAAGGAGCCTGACGCAGAGCTTCACCTACCTGCCCGCAGTCAGACGCCACTTCGCCACCGCGGGCGCCACGGGACTCAAACAGGAGCCCTGGGAGACGGACCGCATCTCCCACAATGCACCTGGCTTCCACGAGCTGCCCTCCCGTGACCCAGACGTGGCTTATTACGATCCCTACCGCCTCCCGGTGCATTGTGGGCCACCTTCCCAGAGCGTGCCTCGGCTTCAtcaccctcctccttcctccggCCCCCTCCAGACCGCCTTAATGTGTCCTCGGGCCTCCCCCATGCCCCCTCAGACCTCGAGTCCCCTTCAGACCTCGAGTCCCGCTCGGATCTCCACCCAGCCTTCGTCGTTGCCCCATCAGACCTTCGctgtccctcctcttcctcttcctccgctGTCCTACGGCGAACGTCAGGGGAAGCGCTCTCCGTCTCGCAGCCCCAGAAGAGGCTTTGcgacttACTTTGCGGCGCCCGCGGCCAGCCCCCGGGAGGACTCGGCGCTGCCCGGCGCCGCAGAGGCGCCGAGCATCAAGCAGGAGCCCGAAGAACAGCCGAATAATCCGGGCTCCCTGGGCCTCCAGGAGATCACACTGGATGATGTGAACGAGATCATCGACCGAGACATCGGCGGCCTGAGCAGCGGCGCCGGGCCCGACCCGTTTGACCAGTACCAGCAGTACGACTGGGAGCACAAGTCCAGTGACAGCGCCTCGCCGTTCCGCGGAGGCCCTCAGTAGTCCACGCTCGGCTTCCTCAGGAAAACTGCAGCTGCAGAGCGCTTCAAACGCGAACCGCGACGGTCACGTGTGCACAAAGTGCACCAAAACTGACCTTCAAGTGCCTGACAACCAATCAGCCGCCTCCGACGAGTCGGCGCGCTCGCCTCTTCTTCAGGGTACCGCATCCGACTTACCGGTTTCCTCTTCGTCTGTCTCAGGAATTTTAGCGGGAAAACCAAAGATGTTTTTAGCTTTTCATGAACCGACAAAAAGGGCTGATTTTTAACTTTCAAAGTAATCCGAACAATCAGTGATGTCGTTACAGAGGCGAGACGGAAATCCTCATGTTATttattagggatgcactgaatcagGATTTTTGGGGTTCGACCGAATACCGaacccactggttaagattctgatAAGATACTAGAGATGGTCCggtaccattttttgcttcccgagaccgattctgatacctgaacttgcgtaacggccgataccgagtaccgatctgataccagtgtgttagatattttatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110721 lncRNA downstream 427 3908590 ~ 3910617 (-) True G82200
TU110722 lncRNA downstream 427 3908590 ~ 3910617 (-) False G82200
TU110723 lncRNA downstream 427 3908590 ~ 3910617 (-) False G82200
TU110725 lncRNA downstream 20770 3856326 ~ 3890274 (-) True G82202
TU110717 lncRNA downstream 59109 3849670 ~ 3851935 (-) True G82198
TU110763 lncRNA upstream 3400 3973186 ~ 3973638 (-) True G82213
TU110755 lncRNA upstream 10219 3980005 ~ 4008429 (-) False G82210
TU110757 lncRNA upstream 10219 3980005 ~ 3981549 (-) True G82210
TU110770 lncRNA upstream 27439 3997225 ~ 3999637 (-) False G82220
TU110771 lncRNA upstream 27594 3997380 ~ 3999637 (-) True G82220
XM_039809804.1 mRNA downstream 85453 3799577 ~ 3825591 (-) True lrrn3a
XM_039807410.1 mRNA downstream 280229 3610411 ~ 3630815 (-) True znf277
XM_039808300.1 mRNA downstream 474739 3422286 ~ 3436305 (-) True ciao2a
XM_039809801.1 mRNA downstream 737887 3170771 ~ 3173157 (-) True rxfp3.3b
XM_039809711.1 mRNA downstream 780997 3125724 ~ 3130047 (-) True LOC120564581
XM_039808859.1 mRNA upstream 11924 3981710 ~ 4010282 (-) True dus2
XM_039807492.1 mRNA upstream 49308 4019094 ~ 4060242 (-) True slc7a10b
XM_039809093.1 mRNA upstream 118898 4088684 ~ 4097476 (-) True LOC120564247
XM_039809099.1 mRNA upstream 155841 4125627 ~ 4127757 (-) True LOC120564250
XM_039809080.1 mRNA upstream 648540 4618326 ~ 4629983 (-) False prr33
TU110644 other downstream 332660 3494391 ~ 3578384 (-) True G82147
TU110610 other downstream 530516 3380027 ~ 3380528 (-) True G82122
TU110247 other downstream 973054 2937752 ~ 2937990 (-) True G81832
TU110074 other downstream 1225804 2684898 ~ 2685240 (-) True G81738
TU110061 other downstream 1232531 2670315 ~ 2678513 (-) False G81726
TU110810 other upstream 307034 4276820 ~ 4278359 (-) True G82246
TU111250 other upstream 1034606 5004392 ~ 5011875 (-) True urahb
TU111339 other upstream 1510962 5480748 ~ 5483491 (-) False faap24
TU111877 other upstream 3318109 7287895 ~ 7291427 (-) True G83064
XR_005640162.1 other upstream 4605468 8575254 ~ 8575431 (-) True LOC120564825

Expression Profile