RNA id: XM_039808859.1


Basic Information

Item Value
RNA id XM_039808859.1
length 1832
RNA type mRNA
GC content 0.60
exon number 16
gene id dus2
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 3981710 ~ 4010282 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCGAACAGGAAGTTGGAACAGCACGCTTCATTTTCTCCCCCACGTTACAGCTGCTGTCGTCAGTATTTGACAACATAAATGCCGGACGACTGAGCCGTCATTATGGCAGCAGGCAGGCTGAGCTTCAGTAACATCACCGCCCTGGCTCCGATGGTCCGGGTCGGGACTCTGCCCATGAGGCTGCTGGCTCTGGACTACGGAGCTGATGTGGTTTACTGTGAGGAGCTGATTGACATCAAGATGGCCCAGTGTCACAGAGTGGTGAACGaggtgCTGGAGACGGTGGATTTTGTCGCTCCGGATGAGCGCGTGATGTTCAGGACCTGCGAGAGGGAGAAGGACCGAGTCATCTTCCAGATGgGAACTGCGGACCCGGACCGAGCGCTGACCGTGGCCCGGCTTGTGGAGAAGGATGTGGCTGCTGTCGATGTGAATATGGGCTGTCCAAAGGAATACTCCACCAAGGGCGGGATGGGAGCTGCTCTTCTGTCAGATCCCGACAAGATTGAGGCGATCCTCAAGAAGCTCGTCACAGGAGTTTCCATACCGGTCACGTGTAAAATCCGAATCCTGCCTTCGTTGGAGGAGACGATCAGTCTGGTCCGGAGGATTGAGGAGACGGGCGTCGCTGCTGTCGCCGTTCACGGCAGGTTGAAGGAGGAGCGTCCACGCCACCCGCTCCACTGCGACTACATTCAGGCCGTCGCTCGGGCCGTCTCCATCCCCGTCATCGCCAACGGCGGCTCTCTGGATCTGGTGAAGACCAACGGCGACATCGAGGAGTTCAGGAGGGCGACGGGCGCCTCGTCGGTCATGCTGGCTCGCGCCGCCATGTGGAACGCATCGGTGTTCAGCGACCAGGGCCCCTTTCCTCTGGAGAGGGTCATGGAGGACTACCTCAAATATGCGATCCGGTACACCAACCACGCCTTCAACACAAAGTACTGCCTGTGTCAGATGCTCCGGGACAAGGTGGAGTCTCCTCTGGGGAAGCAGGTGCAGGCGGCCCAGACCAACGCGGAGCTCAGcgAGGCGTACGGCCTGCAGGAGTTTTACCGGCTGACCCAGGAGCGGCTGCAGGCCCGGCGAGACGCCCTGCAGAGCGGCAGCCAGCCGGACCGACTCGTGATGGACGGAGACGTCGCCACCATGGCTGTCAAGTTCGAGCGGAGGGAGTATCCACCTCACATCACTCCCAAGATGTTCTTGCTGGAGTGGAGCCGcaaggagaagctggagcagcCGCAGTACGAGATGGTGCAGCGCTCTCAGGATCGAGCCTTTCAGTCGACCGTGACTCTAGCAGAGAAGAGATACAGATCTACACTGTGggagAAGTCGAAGAAATTTGCCGAACAAGCGGCGGCGGTCGTCTGTCTGCGCGTCCTGGGGGTCCCGGAGGGTCGCATCGGCGAGGAGGACTCGGGCCTGGTCTGCAAGAGGAAGCGCGAGGGGAAGACGAACGGCGCCGCCGAGGAAGAGGCGAGCAAGAAACGACACACGGCAGCCGATCTCCGACAGGAAACGGACAGCTCAAAGGCGGGCAACGGTGGGCGCCACGCAGCGGACACGCCTCCAGAGCAGCCGCAGCGTTCAGGACGCGCCAGGATCTCGTTTTAGTTCGAACGGGACAAATACATACAGCTGCTCGGCCGCTGATGGACGCCGTTTAAAAAGCAGCCCGTCAGCTCGCCGTACGTTTCCCTTAACCCTCGAATGTAACGCTGAGGTTTCTCGCTcagctgctacacacacacacacacacacacacacacacacacacacacacacagagagacacacagacacacacacacacacacacacaca

Function

GO:

id name namespace
GO:0002943 tRNA dihydrouridine synthesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0017150 tRNA dihydrouridine synthase activity molecular_function

KEGG:

id description
K05543 DUS2; tRNA-dihydrouridine synthase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110757 lncRNA downstream 161 3980005 ~ 3981549 (-) True G82210
TU110763 lncRNA downstream 8072 3973186 ~ 3973638 (-) True G82213
TU110761 lncRNA downstream 30778 3950671 ~ 3950932 (-) True G82211
TU110734 lncRNA downstream 67351 3879427 ~ 3914359 (-) False G82207
TU110735 lncRNA downstream 67351 3879427 ~ 3914359 (-) False G82207
TU110777 lncRNA upstream 22962 4033244 ~ 4042855 (-) True G82225
TU110781 lncRNA upstream 46692 4056974 ~ 4057299 (-) True G82229
TU110796 lncRNA upstream 66096 4076378 ~ 4167786 (-) False LOC120564247
TU110806 lncRNA upstream 87405 4097687 ~ 4129293 (-) False G82243
TU110807 lncRNA upstream 87405 4097687 ~ 4270916 (-) True G82243
XM_039808856.1 mRNA downstream 11924 3911044 ~ 3969786 (-) True LOC120564132
XM_039809804.1 mRNA downstream 156119 3799577 ~ 3825591 (-) True lrrn3a
XM_039807410.1 mRNA downstream 350895 3610411 ~ 3630815 (-) True znf277
XM_039808300.1 mRNA downstream 545405 3422286 ~ 3436305 (-) True ciao2a
XM_039809801.1 mRNA downstream 808553 3170771 ~ 3173157 (-) True rxfp3.3b
XM_039807492.1 mRNA upstream 8812 4019094 ~ 4060242 (-) True slc7a10b
XM_039809093.1 mRNA upstream 78402 4088684 ~ 4097476 (-) True LOC120564247
XM_039809099.1 mRNA upstream 115345 4125627 ~ 4127757 (-) True LOC120564250
XM_039809080.1 mRNA upstream 608044 4618326 ~ 4629983 (-) False prr33
XM_039809079.1 mRNA upstream 608044 4618326 ~ 4629983 (-) False prr33
TU110644 other downstream 403326 3494391 ~ 3578384 (-) True G82147
TU110610 other downstream 601182 3380027 ~ 3380528 (-) True G82122
TU110247 other downstream 1043720 2937752 ~ 2937990 (-) True G81832
TU110074 other downstream 1296470 2684898 ~ 2685240 (-) True G81738
TU110061 other downstream 1303197 2670315 ~ 2678513 (-) False G81726
TU110810 other upstream 266538 4276820 ~ 4278359 (-) True G82246
TU111250 other upstream 994110 5004392 ~ 5011875 (-) True urahb
TU111339 other upstream 1470466 5480748 ~ 5483491 (-) False faap24
TU111877 other upstream 3277613 7287895 ~ 7291427 (-) True G83064
XR_005640162.1 other upstream 4564972 8575254 ~ 8575431 (-) True LOC120564825

Expression Profile