RNA id: XM_039808886.1


Basic Information

Item Value
RNA id XM_039808886.1
length 3497
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC120564144
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 12965964 ~ 12974409 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGacgctgcagtcagcagcagGTGTGGACGTGCAgtgttatttctttattttggttTGCTTGCTGCAGCTCGCAGGCTCATGCCACTCCGTGTGGTTAAACTGAAGCGGAttcaggtccaggtccaggtccgGGTGTAAACCCTGTCTGTGTGGTTCACTGTCGAGATGTCGTCGGCCCAACATGACGGAACCTTGAGTCAGCTCAATACGTTTGAGAAACTGTCGTGGAGGCCCTCCATCCGCGAATCAGGCTCCAAGAAGCGGGCACGGTGGCTTCAGGCTCGGCGCATCTTCTCCCCTTCCTGCCCCAACCTGCGGATCCCCAACAGGTTTCTGAGAGAAGGACACTGTGTACCCCCTGCTCGGAGCGGACACCGGTGTGTTGCAGACAGCTCCAACCTGTATGTGTTTGGAGGCTACAACCCAGACTTTGAGGAGGCAGGCGGGTCAGAGAATGAAGACTACCCTCTTTTCAGGGAGCTTTGGCGGTTTCATTTTGCCACAGCCACCTGGCAGCAGGTCCGCACAGAGGGTTACATGCCCACAGAGCTGGCCTCTATGTCAGctgtttTACACGGCAACAACCTGCTTGTATTTGGTGGCACTGGGATTCCATTTGGTGAGAACAACGGCAATGACGTCCATGTTTGCAATGTACAGTACAAACGATGGAACCTGCTCAACTGCAGAGGGAAGAAACCCAACAAGATCTACGGACAGGCGATGGTCATCATAAATGGCTACCTCTATGTGTTTGGCGGGACAACGGGCTACCTTTACAGCACCGATCTGCACCGGCTGGACCTGACCACCAGAGAGTGGACCCACCTCAAACCCAACAACGCACCATCAGACCTACCTGAGGAGAGGTACAGACACGAACTAGCTCATGATGGACAGAGAATATACATTTTAGGAGGTGGGACGTCCTGGACCTCATATACCCTGGAAAAGATTCACGCATATAACTTGGAGACAAATTACTGGGAGGAAATGGTCACCAAACCCCATGAAAAAATAGGATATCCTGCTGCCCGCCGTTGTCACAGCTGTGTGCAGGTCAAAGATGAGGTGTTTATATGTGGGGGTTATAATGGAGAGCTGATCCTATCCGACCTGTGGAAGATCAACCTGCAGACTTTTCAGTGGACCAAGCTGCCTGCCGCCATGCCAGAACCAGCATACTTTCACTCTGCTGCCGTCACTCCAGCTGGCTGCATGTACGTCCACGGCGGCGTCGTCAACATGTCTGGGAACAAAAGGACTGGCTCTTTGTACAAAGTGTGGTTGGTGGTGCCCAGCCTGCTGGAACTGACCTGGGAGAAACTGCTGAAAACTTTCCCTCACTTAGCCCAGCTGTCCACCCTTCAGCTGCTCAGCATGGGACTGACACACGCACTAATTCAGCGGCTCAAATAGACGGAGCACAGAGACTGAAGGACGTGCTATGTGATGGAACGGCACTGCCTCTAAAATATAACTGATGACTCGGCAAAAAAGTTcttgaaaaggaaaaaagtctGATGTCAgatgattatttaaaaaaactttgaatgccttttaactttagttttatgtaaatgtaggtgcttttttttttttttttaaatgcaaagtgCAATGTTTTATGTTTCTCTGTATGTGAATGTATCAGATTTGAGTTTGCATGCATCCATCAGAAGCCATGCATCAGCATGGACACCAGAATCACTGTTTCTTGTGCTTTTGTACTCAAAAGTTTTGGGTCCATTATGTCATGCATTTcccagttgttgttttttcacacATCACTGTCACAGAAACTTGTAGAGCAGGAATAGTTCAATGTTCCAAAGATCACTTATTGAAAGGCAAAATGAATGTTGCTTCTGCGAATGTCATTTTAGATTCAATTCAGAGATCAGTTTGTTTCACTGTAGCTGAAATTCTCCGCACACTGTTTGCAATCTTTGCCACATGTTCAGTCCCCACTGTGACATAGGTTAGATCAGAAATGACTGCCCCAACCCATGGTGATATAAACTTAAATGTCCATTTAGTTAGTTAGAAATCAGCCAGATGATCTGAAAAGACACTGCTGATAAATCATGGACACGTGAAACTGGGATACCTAAAAGACTAATTAGGTTAATTATTTAAGGCGTCATGTTTTAGCCTCAAGGGCTTTCTGttcaaatttgaaaatgttCCCCTCACTGGAACACATTAGGCCTTATGATCAGATGAAAACACAAAAGCCTTTTTAAAACCGCTGCGACATGGCATCACTGTGAAACTTCTAGTGCCTCTTTGGTTattcttcctttttgttttaggAAAAATTAAGCTTAATAAGTTAGAAATGATTTTATTAAACTGCAGCTCCACAGTGATTCTCAAGCCTTTTTCATTTCTACATTCGGTGCCTTCTGAATTTCCAATATGTCCCACACATTGTTTTTACATCTCTGTAGAagattttgatttgtttattacTCTCTGAGCTGTGCACATGCAGCCTTTTTCCCCATTGCTTTACCGGGTGTTCTCCACATGAGCCTTTTGTTGCTAAAATAATCAGGAGATGCCACTTGCAGCTAAAGATTTTTCTTTGTGCTGCTGTTTGATTTTATGacaaaactttctttttttttaattatagcaAAATGTGCAGCTACATTCTTTTACACTTAAATGGTCATTTCAGTTCCCAATGTATGCCTAAACTTCATTTTAACCTTTTATACTGCataaggctgttttttttttaactttagtcTCGTTTTTCCAGAGAACTTTGTGCTAGGGTACTTTGAAAAATAAGTGGCAggggacttttttttaactagtATTAACTAGTAACAAGGTATTTAAGGTGTACTCAGGATGTGAAATACTGTGTTCAGACTCCGTCTGTAGAGCATCACCATCGCCAAAATGTCAACTGGCTGTCATTTTTGGGACAGAAATATGTACAAGATGACTCATGAAAACTAATCTTTCGTGGCTACTGTGGACTGTAACTCTTAAATACTTTAACATTTCAGCTGCTTGTATTAAGTCACACTTTTGCCTCTTTCTTTCACCTATTTTGTCAAACTCTACCTTAAATACTTTATCTCATGTTCACTTTAATTGTTGGTACAATACTAAGCTAACTCATCTAAAACATTGTCTCATAAtgctcattttcacattcaaaaCTCCACctcatttacattttgtttgacATGTTGCAGCGTTATTTATATCCTATTATGAAGCAACAGCTTCACTTTGTGCTTGGACTTGGTAAATGTACTGCCTTGGTTAAGATTGAGATGTTTATATTTGCATAACTTTTTTATGTTAATGAAAGTTAAATTATCTCTTTTGCATGTCAGTATGGTGTGCATGTCACTTTACATAAACTCTCAGGAGAAAAGGTGAATGTCTCCTCAAAAGCAAATATGGCTGTAATGTACATTATGTTTTGTAATTCCTGTCCGtgcaaacaataaaaacacaggcagcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113591 lncRNA downstream 17041 12948661 ~ 12948923 (-) True G84370
TU113590 lncRNA downstream 17355 12948274 ~ 12948609 (-) True G84369
TU113560 lncRNA downstream 26547 12938044 ~ 12939417 (-) True G84350
TU113547 lncRNA downstream 56018 12908967 ~ 12909946 (-) True G84338
TU113529 lncRNA downstream 67407 12897059 ~ 12898557 (-) True G84326
TU113600 lncRNA upstream 3553 12977962 ~ 13046029 (-) True G84378
TU113607 lncRNA upstream 16618 12991027 ~ 13040446 (-) True G84384
TU113690 lncRNA upstream 218860 13193269 ~ 13193706 (-) True G84446
XR_005640039.1 lncRNA upstream 226534 13200943 ~ 13201663 (-) True LOC120563976
TU113816 lncRNA upstream 260764 13235173 ~ 13235410 (-) True G84532
XM_039808885.1 mRNA downstream 21728 12940996 ~ 12944236 (-) True LOC120564143
XM_039808882.1 mRNA downstream 34752 12914638 ~ 12931212 (-) True si:dkey-103i16.6
XM_039808821.1 mRNA downstream 191709 12760632 ~ 12774255 (-) True slc17a8
XM_039809443.1 mRNA downstream 207174 12743161 ~ 12758790 (-) False nr1h4
XM_039807480.1 mRNA upstream 27711 13002120 ~ 13014975 (-) True LOC120563354
XM_039807482.1 mRNA upstream 27711 13002120 ~ 13013503 (-) False LOC120563354
XM_039807481.1 mRNA upstream 29289 13003698 ~ 13014975 (-) False LOC120563354
XM_039807483.1 mRNA upstream 29289 13003698 ~ 13013503 (-) False LOC120563354
XM_039809178.1 mRNA upstream 42156 13016565 ~ 13026368 (-) True LOC120564327
TU113260 other downstream 821418 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1077566 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2303286 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2533820 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 2785967 10174824 ~ 10179997 (-) False tdg.2
TU113814 other upstream 256208 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 599422 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 1056695 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 1248841 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1527551 14501960 ~ 14507201 (-) False LOC120563775

Expression Profile