RNA id: XM_039808971.1


Basic Information

Item Value
RNA id XM_039808971.1
length 2357
RNA type mRNA
GC content 0.52
exon number 6
gene id rassf7a
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 25651752 ~ 25688678 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGAGCTTCAAGTTTTTTTCTGCTCTTATCTCTGAGCTTTCTTACATGCAGCCCTTTGTGTCACTGGGGAATGTAGAATACAAAGAGAATGACTGAGAAAATTGATACAGAGAGAGAACGACAAAGCCGGGAAAAAAACCACACTTTCAACTACCTGAAAAGGGGGAGGTACCTGATCTGTCAGCACGGCAAAAAAGGttggggagaaagagagagaggagtgactGAAagggtgtgtttctgtgtgggtgagagacagagagagggaggaggggtagagagagagagagacagagagacagagagagcgagagagagagactttcaGATCTTGGCTGTGGTAGGGACACCCAGGAGAAGTGCATTCCTGAGGCAGCAAGCGAGGAGAAGGCAGTAAGAGAGCGGAGAAGTCGCGGCATCCTTTAAATCTCTCCGTGACCACGTCCGACTGCCTCTGACCTCCGGACTCTGgactcgcacacacactcactcactgccTCGCACACAAGCCACAAAACCGGCTCCGCTACTCTGTCAGAAGTCAAGGATTCCCCCGAGTGAGGAAAAGGGAAGGAGAGAATTAGAACTGACAGAGGTGAGGAAATAAAGACACAGAAGAGAAGGCGAAGATCCTCCCACTCGAGTCCGTGCCATGCAGTGTTGAGTTGAGTCAAGCCGAGCTGAAGTGATCTGTTTTGAAGACCGTCTTACCCTTCGCCCCGTCTCACCTGGTCCCAGATGGAGCTCAAAGTGTGGGTGGACGGAGTGGTGCGGGTGGTGTGCGGCCTGTCTGAGGAGACATCCTGCCAGGATGTAGTCATCGCTCTGGCCCAGGCCATTGgTCAGACAGGCCGCTATGTTCTGATCCAGCGTCTTAGGGATACAGAGAGGCAGCTGTTGGCTACAGAGAAGCCTCTGGAGTCTCTGGCTAAGTTAGGCCAACATGGCGCCGAAGTTCAGTTCTTCCTGCGCCGTACTGGCCCAAGCAGCAGTGACGGACCCAGCTCGAAACAGGACAGACCAACTTCACCCCAACTGCCCAAGCATCCTGAGCCAGAGCCTTTGAAACGCAGCCAGCCTAAGAAAGCACTCACCTTTAACCTGGGGCCATCCACCTCTCCGAATACCAAAGCCAAACAGTTTAAGAAGTCTCCTCGGGACTCTCCAGAGCAAAGAGCCTCCCCTTCTCCCAGCCCTGTATCCCCTCATATTCCATCCCCATCCCCATCCCCAGCACTACCTATAGGCCCATCCAAAGAGGAGGTTTTTAGGAAGGTTCTTCAGCAACAGGAGCGGCTGAGGGCTATGGAGGCCCAGCTAGAAGCCCTAGagagggagtcacacacatGGGAGCGTCCCAGCCCATCTCCATGTCCTTCACCAGTTTCTGACACTCACTTGAAAGAAGAGATGGACTCTCTGGAGCAAGCGGCGCGGAGGAACCAGGCCGAGCTCGCCCATGAACAGTATTGGGAGGAGGAGCTTAAGGCAGAGGTGGAGAGGGAGCGAGGAATGAGGAGGAAGCTCGGGGAGCTCCACGCCAAGCTCGACGACTGCGGACGGCGGCTCCACAAGTTCTCCGTTCGCGCTGCTCAGCTGGAGCAAGAGATCCAGCGGGAAAGCCAGACGGAAGGGAAAGCCAACAGACCCGAGGAATCCCTCGACGCCGTGAAGGCAGAGCTCCAGAGTCGGGAGAATCACGGGACAGAGCTGGAGGAGCAGCTTTCTGAGACTGACAAGGCTCTGGGGAAGGCAGAGTCTCTGATGCAGGCCAaacaggaggagctggaggagttGAATAAGGAGCTGAGGCAGTGTAACCTGCAGCAGTTTATTCAACAGACAGGTGTCCTGCCAGCGCACACTCACTCACGCACCGAGCTTCAGGAGCAACTGGAGCAGTTAGAACTGGCACATCTTCTGCAGGATGGATACAGTAATGGAAGCCACAGTGTAAGTCAAGTGGAATCGCCACCTCGGCCCACTGCCAAACAGTTCCTGGGACATCCACGCAACCTGCAAAACCCTCTGGTGTCCAGTCTCAACCCtgaggTCCTGACATCCCGAGAGTCGTCATGGAGATAAAACAAGGACCGCAGGGCCAAAGGAAAAGTTGTTCACTGTTCTGTCACCGTCACATCTTATTTAACCCCTTTCTTTGTAACTCATTATTTAATCGACCAtgatatacatactgtatatacataagACAAATATATTTACAGAGTTTTGCTACTGTAAACACTGCAAAGTATCTCtatgaaatgtaaaataatttaGAAACCTTTTACCTAGAGCAATTATTACCATTACTGTgtatttaaatataataaaaatgtgCATTGTGTTTTAGATAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118488 lncRNA downstream 1635 25649329 ~ 25650117 (-) True G87961
TU118484 lncRNA downstream 4796 25645746 ~ 25646956 (-) False phrf1
XR_005640065.1 lncRNA downstream 155447 25425552 ~ 25496305 (-) True LOC120564131
TU118393 lncRNA downstream 207330 25442937 ~ 25444422 (-) True G87888
TU118388 lncRNA downstream 286977 25364568 ~ 25364775 (-) True G87883
TU118491 lncRNA upstream 60768 25735499 ~ 25736123 (-) True G87964
TU118506 lncRNA upstream 202969 25877700 ~ 25880981 (-) True LOC120563936
XR_005640034.1 lncRNA upstream 203558 25878289 ~ 25880970 (-) False LOC120563936
TU118504 lncRNA upstream 279607 25954338 ~ 25956429 (-) True G87977
TU118514 lncRNA upstream 300061 25974792 ~ 25975152 (-) True G87986
XM_039808532.1 mRNA downstream 4752 25630776 ~ 25647000 (-) True phrf1
XM_039807494.1 mRNA downstream 33769 25616361 ~ 25617983 (-) True ascl1b
XM_039808850.1 mRNA downstream 264446 25302836 ~ 25387306 (-) False pamr1
XM_039807606.1 mRNA upstream 18004 25692735 ~ 25702672 (-) False lrrc56
XM_039807607.1 mRNA upstream 18004 25692735 ~ 25702672 (-) True lrrc56
XM_039809076.1 mRNA upstream 64217 25738948 ~ 25748198 (-) True ldha
XM_039809390.1 mRNA upstream 301669 25976400 ~ 26027084 (-) True abtb2b
XM_039807650.1 mRNA upstream 357664 26032395 ~ 26180506 (-) False b4galnt4a
TU118402 other downstream 54991 25596353 ~ 25596761 (-) True G87897
TU118279 other downstream 586264 25064752 ~ 25065488 (-) True G87803
XR_005640032.1 other downstream 1735550 23909169 ~ 23916202 (-) False LOC120563922
TU118702 other upstream 999112 26673843 ~ 26674883 (-) False ptprjb.1
TU118864 other upstream 1338506 27013237 ~ 27014411 (-) True G88249
TU118971 other upstream 1549321 27224052 ~ 27228966 (-) False zgc:153031
TU119050 other upstream 1680241 27354972 ~ 27355776 (-) True G88379
TU120007 other upstream 5047377 30722108 ~ 30722503 (-) True G89085

Expression Profile