RNA id: XM_039808991.1


Basic Information

Item Value
RNA id XM_039808991.1
length 4140
RNA type mRNA
GC content 0.48
exon number 10
gene id slco3a1
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 16213775 ~ 16254088 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGCCTGCTACACAGCGCCTCTAGGGCCGTGCGTGCATGtgctgacagaggaggagagtaGTAGAGAGAGGTGGGAgcgcagagacagagagcagagcagtCATTGTGCGTGAAGGACCCTGACAGTCCGTAGCGGCAGGAGttggaagagaggaagaagacgCCTGTAAACAGTACCTTCACCTGCAGCTGAAACCCACAAAACCCCGCGGCGAAAACATGCAATTTGACAGAAATTCGCGCGTGGTTTAACGTTACTTGTGCCTCTGCAAACACCTTCAGGAGGGAGTTCACATGTTTCTGTAGGCTACGTCGACGAAGAGGCAATGTTTAGGCGCAGACTACCGGCAGAGCCCCGTGGAGTTTGGACGTGTGTTTCGTAGCTTGTCACATGTATGAAGACTATTTACTGAATCAGGAGAAACCGCAACAAGAAGCACCGCGAATGTAGTCTTCAGGGTGGAAAGCGAAACACTGTACCTGCCAGTGTCTTCCCGCGGGCATCCTCCTGCGTTTTTCGGATTCTCGCAGTACTGTGTGGGTAAAGTAAAGGGAGGATGCAGGTGAAGAAGCACCGGGACTCGGACCGGAGCGGCGGGGACATGCTGGAAGGAGACGGCCTCCGCAAAAACTCCTCATGCTTCTCAAATATCAAGATATTCTTGATATCGGAATGCGCCCTCATGTTGGCTCAGGGCACCGTTGGAGCGTACCTGGTGAGTGTGCTGACCACCCTGGAGCGGCGGTTCAACCTGCAAAGTGCTGATGTAGGAGTGATAGCCAGCAGCTTTGAGATAGGCAACCTGGCTCTCATTCTGTTTGTCAGCTACTTTGGGGCCAAAGCACATCGGCCCCGTCTGATCGGCTGCGGGGGCATCGTCATGGCGCTCGGCGCTCTTCTCTCAGCTCTGCCTGAGTTTCTAACTAAGCAGTATCAGATAGAGGAAATGTGGAGGACTGACATGGGTCGGGATGTTTGCTCCAACTCCAGCAGCACAGACGTTCAGTTGGCTGAGGACGTGATATgcggcaaaagggccaacaccAACATGATGTACCTGCTGCTGATTGGAGCTCAGGTCCTGCTGGGGATCGGAGCCACACCGGTGCAGCCCCTGGGGGTGTCCTACATCGATGATCACGTGAAGAAGAAAGACTCATCACTCTATATAGGAATCCTCTTTTCTACACTGGTGTTCGGGCCTGCCTGTGGCTTCATCCTCGGCTCCCTCTGCACTAAGTTCTACGTAGATGCTATCTTTATTGACACTGATGCGCTGGGCATCACTCCAGAAGACCCGCGGTGGATCGGTGCCTGGTGGGCAGGCTTCCTCCTGTGTGGTGCCTTACTCTTTTGCTCAGCTCTCTTTATGTTTGGTTTCCCTCAGTCACTGCcatccacagagagagaggagggggcagACAGTGAGCAGGTTATGCTTCCTCCCTCTCCTAATGCAGAGTATGAGACTCCAAAGCCCAGCAATGGGGTTGTACGCAGCCCCGAGCCTGCCAACAGCCCCACCTGCTGTCAGCAACTCAAGGTGATCCCCAAGGTGACCAAGCACCTCCTGTCGAACCCAGTGTTCACCTGCATCATCCTGGCAGCCTGTATGGAGATCGCGGTTGTGGCGGGCTTTGCAGCCTTTCTGGGGAAATACCTCGAGCAGCAGTTCCATCTCACCACCACCTCAGCGAACCAGCTGTTAGGTATGACCGCCATTCCATGTGCATGTCTGGGGATCTTCATGGGCGGTCTGCTGGTGAAGAAGCTGAACTTGTCGGCGCTGGGAGCCATCCGCATGGCCATGCTGGTCAACCTGATCTCCACCGCCTGCTACGTGTCCTTCCTGTTCCTAGGCTGCGACACCGGCCCTGTCGCAGGAGTGACAGTCCCATACAGAAACGAGACTCTGCGGGTGGGCGAGAAACCAGAAGCCCAGTGCATCAGTCGCTGCAACTGCTTCACCTCCTCCATCAGCCCCGTGTGCGGCTCCAACGGTGTCACCTACCTGTCCGCCTGCTTTGCCGGCTGCACCGGAACAGGAAACTCTCGGACCACATCGAACATCTCTCAGAACCTGACGGGATGCGCTTGTGTATCCTCTGAGAGTGAATTGGCCACAGCGGTTCCAGGGAAATGTCCGACGCCGGGCTGCCAGGAGGCTTTCCTCGTCTTCCTGTGTGTGATTTGTGCCTGCAGCCTGGTCGGAGCCATGGCCCAGACGCCCTCGGTTATCATCCTAATCAGGACTGTGAGCCCGGAGCTGAAATCGTACGCACTTGGAGTGTTGTTTCTTTTGCTACGACTCCTCGGATTCATCCCCCCTCCTCTGATCTTTGGTGCTGGGATCGACTCCACTTGCCTTTTCTGGAGTTCAGACTGCGGCGATCGGGGTGCCTGCCTGCTGTACGACAACGTAGCTTACAGGCATCTGTACGTGAGTCTCGCCATCATCCTCAAGGGCATCGCTTTCCTTCTCTACACCACTACGTGGTATTGCTTACGCAGGAACTACAAGAAGTACATCAAAAGTCACGAGGGCTACATGTCGGCGACGGAGTTTTACCCTTCACTCACTGACGGCCCCAAACCAGTCGACAGGACAAAGTTTATATATAACCTAGAGGACCATGAGTTTTGTGAAAATATGGAGTCCGTTTTATAGTTTGTTATGCAAGAAAAGGACAATATGGACATGCATATTCTCTCAAAGGAATATTTGATTCTTCTTTTCTTGAAAggataaaacaaaatgttttcaatAAAGGCAATCTATTTAACGGCCCGTTCAGGTCACAGGAGACGTTGCTCTCTACTGCGCTCCACATCCTCGCTAAACTTTCAAGGGTCCATTTTAGTTTACGTATCAGCGAGGTGTTGTCCAGTGTTGCCGATGAATTCCTGTGTTGACTTGGTGGTAGAAGACAACTACAGTTTAGCTCAGTCCTAGTTGATAAGTGAGTGGTCATGATGCTTTTACAACTAGTTGCCATATTGCTTTAGGTCTGTCATGATTCCAGTGATCTGTGAAAAATGGCAGTCAGTCAGTGCACTGTGTGTTCTGCCTGTCACTCTCAAAAATTTGAtttttaagataagataaaaaaaaaaagaattgggcCGGTTCTTCATTTTCAGTTATACATATTTAAAGTTGCCAAGTGTTTACAAACTAATAGTTCATCtgttaatgcattttattttaatgcaggACGGTTGAGAATGAAACAAAATGAGAATAGAAAACACCCTGGCTGGGTTATTAGAGTGGCCTAGTAGATGTTTTAACTGCCAGTAAAGTCTAATAACTTAAAACACGGTAGTGTTCTCATGTCATCTTGCACTGTTCAGTTTGTCGTTCTCTTGCTGTATCACAGGCACTGTTTTTGATACTGTTTAGACTAGACTGTGAAGTCTTGTCTCTTAGGTGCAAATGTGCAATTCATATCTGATACATATAACTAGTTTTGTGTCAGATTGCaggtttgtttttcattatagcagtttgttaatgtttgtttttacatcTGCAGAGTTTATTCAACCTAACACGTCTTAATAAGGGATTATTCAAATAAGAATgttaattgtattttatttttacacctAGTGCAAgagcaaatgtgttttggaCATTCAAGTAAAATACATGAGAAGTAATCTATTAGTTTCATTAGGCCCAGACTGTTTTATTAGATTGTATTTGAAAGGAcagtataaattatatataatctaattgtgtgtgtgtgtgtgtgtgagtgtgagtgtgagagagagtgagtgtgtgataCAGAAGATTTGGGACAACTCATAGGGATGAAAGTATTATGTTGCATTAttgttgcaaaaaaacaaactaggCCTGTTTATAGCTGGGATAAAAGTTACAGAATTGCTGCAGGAGTTTGTTTGTGCAAGCTCAAACAAAGTGAACAACAAGAAAACCACACTGAATTTATTCCTGGACATGTATTTGAAGAACTCTTTTAACACAACTCGGCACATACTGTACGGCCTGTTACTCTACTGATCTCTCTGCATTTACAGTTTTCACATTGTCCCTTTTCTTACACTTTTTGTATGGCaacatattgtttattttactctggaaataaattatttttcagaaaataaa

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14353 SLCO3A; solute carrier organic anion transporter family, member 3A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114811 lncRNA downstream 19173 16188853 ~ 16194602 (-) False st8sia2
TU114805 lncRNA downstream 26439 16176615 ~ 16187336 (-) False chd2
TU114804 lncRNA downstream 30172 16176615 ~ 16183603 (-) False chd2
TU114806 lncRNA downstream 30348 16173689 ~ 16183427 (-) False chd2
TU114802 lncRNA downstream 30348 16176615 ~ 16183427 (-) False chd2
TU114816 lncRNA upstream 3887 16257975 ~ 16258235 (-) True G85250
TU114820 lncRNA upstream 21563 16275651 ~ 16277412 (-) True G85253
TU114898 lncRNA upstream 116913 16371001 ~ 16372919 (-) True G85312
TU114905 lncRNA upstream 207474 16461562 ~ 16462518 (-) True G85319
TU114919 lncRNA upstream 274519 16528607 ~ 16528849 (-) True G85328
XM_039808675.1 mRNA downstream 4589 16193583 ~ 16209186 (-) True st8sia2
XM_039808671.1 mRNA downstream 26638 16155984 ~ 16187137 (-) True chd2
XM_039808672.1 mRNA downstream 26661 16155984 ~ 16187114 (-) False chd2
XM_039808673.1 mRNA downstream 30345 16155984 ~ 16183430 (-) False chd2
XM_039808670.1 mRNA downstream 30345 16155984 ~ 16183430 (-) False chd2
XM_039807711.1 mRNA upstream 126855 16380943 ~ 16409443 (-) True LOC120563512
XM_039807471.1 mRNA upstream 197945 16452033 ~ 16461232 (-) True zgc:162879
XM_039807741.1 mRNA upstream 208467 16462555 ~ 16549024 (-) False sema4ba
XM_039807740.1 mRNA upstream 208467 16462555 ~ 16509401 (-) True sema4ba
XM_039807739.1 mRNA upstream 208467 16462555 ~ 16501721 (-) False sema4ba
TU114652 other downstream 669693 15514778 ~ 15544082 (-) True G85133
TU114636 other downstream 729849 15478982 ~ 15483926 (-) True ttc23
TU114482 other downstream 1140425 15066039 ~ 15073350 (-) True G85014
TU114449 other downstream 1246328 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114408 other downstream 1706574 14501960 ~ 14507201 (-) False LOC120563775
TU114908 other upstream 185286 16439374 ~ 16440965 (-) True G85321
unassigned_transcript_374 other upstream 510627 16764715 ~ 16764786 (-) True trnah-gug_10
TU115062 other upstream 553968 16808056 ~ 16808416 (-) True G85435
unassigned_transcript_375 other upstream 1672959 17927047 ~ 17927118 (-) True trnaq-cug_6
TU115583 other upstream 1776920 18031008 ~ 18036276 (-) True G85813

Expression Profile