RNA id: XM_039809013.1


Basic Information

Item Value
RNA id XM_039809013.1
length 2256
RNA type mRNA
GC content 0.48
exon number 10
gene id zgc:101540
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19537502 ~ 19547183 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGTGAACTTTGTCACAAATTGTGTTTAACTGACTTGCATAACAACATCCACCACTGCCTCTCAGTGACAGATGCGTCCTGCTGCCTAGTGCGCTCTGCAAAATGTACATCTGCTTCACCGTTATAGCCGGACTGGCTATTCTGTCCTTCTTCTTTCTCAGGACACGTTTCCCTTACTTAGGCGAGGACTGCGCCTACATCCTGAGGAGCATTAAACTCGGCTTCAGGCTCATCAAGTACAAGAAAGTCAAACCTTTTTACAGCGTCTTGGACTGCTTCTTGGATGCAGCGAAGAGGCATCCCAGTAAGATCTTTCTGCACTTTGAAGGACGAGAATATACTTATGGAGAAGTGGATAAACTGAGCAACAAGGTAGCCAGAGCTCTGCAGGCTGAAGCCCGGCTGAAGGAGGGGGACGTGGTCGCCTTGTTTCTGGCCAACGAGCCCAGTTTCGTGTGGACTTGGCTCGGTTTGGCCAAGCTGGGCTGCCCGGCTGCTCTACTCAACTTTAACATCAGATCCAAGTCTCTGTTGCACTGTTTCTCCTGCTGCGGGGCCAAAGTGATCATCGCCTCTTCAGagctgcaggatgctgtggagGAGGTTTTACCCACACTGATAGAGCAAGGCATCAGTGTGTACCTCCTGTCAGAGGCCTGCAGCATTCAGGACATCAACACTTTGTCTGACAAGATCTCCCAGGCCTCAGATCAGCCGCTGTCCCGGGACCTCAGAGCCAACGTCAACATCAGGAGCACTGCTCTGTACATCTACACGTCGGGCACTACAGGTTTGCCTAAAGCAGCTGTTGTCACCCAGGAGAGGGTTTGGGCCGCCTCCTTCATCCAAGCGGCATGTGGAATCACATCAGAGGACATCTTCTACGTCAATCTGCCTCTCTATCACAGTGCAGGCTTTCTCATCGGGATGGTCGGATCCATCGAGAGAGGTAATACCATTGTTCTGAAGAGAAAGTTCTCTGCCTCTCAGTTCTGGAGCGACTGCAGGAAGTACAATGTGACCGTGATGCAGTACATCGGTGAAACAATGCGCTACCTCTGCAACACGCCCAAGAAAGACAACGAGAAGAACCACAGAGTAAAGATCGCCATCGGGAATGGAGTCCGGACGGATATTTGGTCGGAGTTTCTGAATCGCTTCGGGGACATTAAAGTTAGAGAGTTGTACGCGGCCACAGAGGGAAACATTGGCTTTATCAATTACACGTCCAAGATCGGTGCAGTGGGGCGGGTCAATTTTGTCCACAGGTTTTTCTTCCCATTTACTTTGATCAAGTTTGACATTGAGAAGGAGGAGCCGGTCAGGAACTCTGAGGGTTTGTGCATCGAGGCAGCCAGAGGTGAGACGGGACTTTTGGTGGGGAAGGTTACTCAGAGGTCTCCCTTTGTTGGGTACGCTGGCAACCAGCaacagacagagaagaagaggcTTCGTGACGTGTTGAAAAAAGGCGACCTCTACTTCAACACTGGAGATTTGCTTCGGTTTGATCACATGAACTTTGTGTACTTTCAGGATCGAGTCGGTGACACTTTCAGATGGAAAGGAGAAAACGTTGCCACATCGGAGGTTGCAGACATTCTCACAATGGCTCCTTGCATTTTGGAGGCAAATGTCTACGGTGTTAAAGTTGAAGGTCATGAGGGGCGGATCGGCATGGCAGCTGTCCTTTTGAAAGAAGGAGAAGATTTTGACTGTTTGCAGACCTACAAGCAGGTCGTCAACTACCTCCCAGCGTACGCAAGACCTCGATTTATCAGGATTCAGCCCTGCCTGGAGATGACGGGGACATTCAAGATGAAGAAAGTGAAGTTGGTGGAGGAGGGATTCAACCCAGCTCACATGGAAGATCCTTTATACTTTTTAGATACTGAGAAAAAGACGTACATTCCCCTGACTGAGGACATCTACAGAGCGATCGCTTGCAGGGAAATAAAACTCTAACACAGAAACGTTAGTACTCAGAAATGAACTAGACGACCCGTTTGTTTACACAGATGTAACATGTCATTCATGTGGACCTTTTGTAATAGTCAACTAATCTCAGGGACAGACTGACTTTGAAACGTTACGTCATGTTTTAAGAGCCTTTTTTAATTAACACAACTACCTttgcttttacagtttttgtaaaTGTATTCCATAATGCTGACAATATATGCTATACAGGCATGTCTTACTGCCTCTGTTGTCCTTTTAATAATTAAACTCTGGttgtcttttttcccccctga

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K08746 SLC27A2, FACVL1, FATP2; solute carrier family 27 (fatty acid transporter), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116464 lncRNA downstream 5880 19530576 ~ 19531622 (-) True G86432
TU116461 lncRNA downstream 10365 19525687 ~ 19527137 (-) True G86430
TU116426 lncRNA downstream 153495 19383619 ~ 19384007 (-) True G86400
TU116420 lncRNA downstream 162563 19371007 ~ 19374939 (-) True G86395
TU116419 lncRNA downstream 168446 19368759 ~ 19369056 (-) True G86394
TU116593 lncRNA upstream 977 19548160 ~ 19548961 (-) True G86519
TU116606 lncRNA upstream 54298 19601481 ~ 19603243 (-) True G86529
TU116587 lncRNA upstream 62222 19609405 ~ 19612201 (-) False G86517
TU116588 lncRNA upstream 62222 19609405 ~ 19617763 (-) False G86517
TU116589 lncRNA upstream 69470 19616653 ~ 19618046 (-) True G86517
XM_039809844.1 mRNA downstream 100846 19434249 ~ 19436656 (-) True duox2
XM_039809862.1 mRNA downstream 114280 19417626 ~ 19423222 (-) True fan1
XM_039808574.1 mRNA downstream 121565 19397238 ~ 19415937 (-) True LOC120564004
XM_039808596.1 mRNA downstream 179258 19341610 ~ 19358244 (-) False LOC120564015
XM_039808595.1 mRNA downstream 179258 19341610 ~ 19358244 (-) True LOC120564015
XM_039809019.1 mRNA upstream 1879 19549062 ~ 19557179 (-) False LOC120564200
XM_039809018.1 mRNA upstream 1879 19549062 ~ 19557179 (-) False LOC120564200
XM_039809017.1 mRNA upstream 1879 19549062 ~ 19557176 (-) True LOC120564200
XM_039809014.1 mRNA upstream 10269 19557452 ~ 19573688 (-) True cep152
XM_039809015.1 mRNA upstream 10269 19557452 ~ 19573686 (-) False cep152
TU116428 other downstream 148927 19387822 ~ 19388575 (-) True G86402
TU116306 other downstream 220092 19315435 ~ 19317410 (-) False arpp19b
TU116123 other downstream 526586 19007196 ~ 19010916 (-) False G86194
TU116124 other downstream 526586 19007196 ~ 19010916 (-) True G86194
TU115837 other downstream 889418 18645526 ~ 18648084 (-) False syt7a
TU116584 other upstream 23119 19570302 ~ 19571922 (-) False cep152
unassigned_transcript_376 other upstream 135663 19682846 ~ 19682917 (-) True trnap-agg_7
TU116763 other upstream 705456 20252639 ~ 20259259 (-) True G86638
XR_005640056.1 other upstream 1259699 20806882 ~ 20828603 (-) False LOC120564033
TU117029 other upstream 1330528 20877711 ~ 20879638 (-) False LOC120563850

Expression Profile