RNA id: XM_039809024.1


Basic Information

Item Value
RNA id XM_039809024.1
length 1487
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC120564204
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 24005568 ~ 24008355 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCCTGGTGCTACATACACCAGTGTTGAAGCTAATGCTACGCTAGCTACGTTCATTGGAAAAGATATGGCAACACTGGTTCAAACAGTTTATGGTTCAAACACATCGGCATTTTCACGTTAAACCAAACCGAGGTAAAAGCGTTTCCGATGCGGTGGTTCGGGTTTGGCTTTAACGCATTTGGACAAATATACGTCCACGAGAAATTAATTAAAGGAGTGTGTAGCGACGCTGTAAATGAAGTCAAAGTGAGTAGTCCGACAGAGCTTGCTAGTCAGGTAGACAGAAGTGACTGCTGCTTGACGACTGATTATCAAATTAGAGCAAGTTGGAGTAGAAGAGCATCATTGCATTTGGATGGTGACCGCTGTGTGTGCCTTGCAGGTTTCGTCTCCAATGAGTCCTGTGGCAGGCCTATGAAAGAGAGCCGTGGCTGTAAAGATGCCATCATCAGTGAATCGTACTTGACCCTCGCTTTCTCAGACAGACTTGAGTCCTGGGATCtgcagaagaaagagaagactCCATCATGGagcatgaaaataaaaccacaCCCAGAGAGCTCTGGACCCCCTGTGAATCTCCCATTAGTCCCTGGGGGTTACATAGCCACGAAACCGCCCCTCTACCGCTCCTTATCACCACACCTTAGAGCCAAGAGTCTGGCACTGAGTGCCGAGCATGTCATCCTTCTCACTGCCTCGGGAGCCGTGTACACCTGGGGACTGGGCAGccatGGTCAGCTGGGACACGGAGGCCTCTCCTCTGAGGAGGAGCCCAGGGCAGTGGAGGCACTCTGGGGGATGCCCATGAGCTGTATAGCTTCAGGAGGCTGGCACTCTGTCTGTATTAGTGATGGGGGAGACCTTTATGTGTGGGGCTGGAATAAAAGTGGCCAGCTCGGACTTCCATCACAAGGTCTGAGGAAAACACTGCAGCAGCAAAGTAGCCAACAAGCAGGCGCACCATGCCAAGATGCCAGCACATCTCCCACTGAAGAGCCAAAGGAGGAAGAGAAACACGAAGAGGTATTCATATCGATCCAGGCATTCCCAGCTCTGCTGGATATCACTCCATCATGTGAAATCAGGACAGTCAGCTGTGGCTGCCGCCACACAGCTGCAGTAACAACCACAGGTGACCTCTACACTTGGGGCTGGGGTGACTATGGCCAACTTGGACACCAGACTTTTATCAGTTCAGATGAGCCACAGCGCGTGGAGTTCTTCAGGGAGCAGCAGATGCGTGTGGTTGATGTAGTGTGCGGGGCATGGAACACTTTTGCTGCTGGCGTCAAGGAGGAAGTAGCTTAGTCTTAAAAATACTATGGAATCCCCTTGATAAATGGCGATACTGGACTTTGGACAACTTACCAGGAAGTGTAaattatcacaacaaatacaagactttgaattgaatgtattttgtaatatacaagttattttaatttctctgtgtaacaaaaataaactTTCTAAATGAGCAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118056 lncRNA downstream 268063 23680748 ~ 23737505 (-) True G87614
TU118029 lncRNA downstream 375283 23629726 ~ 23630285 (-) True G87596
TU117898 lncRNA downstream 587715 23415763 ~ 23417853 (-) False LOC120564579
TU117845 lncRNA downstream 767036 23231238 ~ 23238532 (-) True G87469
TU117844 lncRNA downstream 780927 23198588 ~ 23224641 (-) True LOC120563856
TU118160 lncRNA upstream 29529 24037884 ~ 24039901 (-) True G87695
TU118158 lncRNA upstream 34103 24042458 ~ 24043739 (-) True G87693
TU118202 lncRNA upstream 350638 24358993 ~ 24359284 (-) True G87733
TU118217 lncRNA upstream 576003 24584358 ~ 24584608 (-) True G87748
TU118224 lncRNA upstream 585006 24593361 ~ 24593577 (-) True G87755
XM_039807510.1 mRNA downstream 17037 23986366 ~ 23988531 (-) True gdpgp1
XM_039809882.1 mRNA downstream 31324 23964305 ~ 23974244 (-) True rhcgb
XM_039808433.1 mRNA downstream 68108 23927428 ~ 23937460 (-) False polg
XM_039809023.1 mRNA upstream 81 24008436 ~ 24016140 (-) True unc45a
XM_039809219.1 mRNA upstream 35774 24044129 ~ 24127735 (-) True furinb
XM_039807602.1 mRNA upstream 153222 24161577 ~ 24220343 (-) False rag2
XM_039807601.1 mRNA upstream 153222 24161577 ~ 24193177 (-) False rag2
XM_039807599.1 mRNA upstream 153222 24161577 ~ 24165040 (-) True rag2
XR_005640032.1 other downstream 89366 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other downstream 89366 23909169 ~ 23916202 (-) False LOC120563922
unassigned_transcript_380 other downstream 89662 23915834 ~ 23915906 (-) True trnar-acg_18
unassigned_transcript_379 other downstream 100395 23905102 ~ 23905173 (-) True trnam-cau_7
TU118073 other downstream 264378 23738982 ~ 23741190 (-) True G87624
TU118279 other upstream 1056397 25064752 ~ 25065488 (-) True G87803
TU118402 other upstream 1587998 25596353 ~ 25596761 (-) True G87897
TU118702 other upstream 2665488 26673843 ~ 26674883 (-) False ptprjb.1
TU118864 other upstream 3004882 27013237 ~ 27014411 (-) True G88249
TU118971 other upstream 3215697 27224052 ~ 27228966 (-) False zgc:153031

Expression Profile