RNA id: XM_039809049.1


Basic Information

Item Value
RNA id XM_039809049.1
length 1804
RNA type mRNA
GC content 0.44
exon number 7
gene id parp16
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19623665 ~ 19629890 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACGCTTTTTCTACAGCACTGGCTTGAACGCAGCAGTTCGttcagctagcattagctcttgctGCAGTGCTATGAGTTGAGCACGACTGAAGTGCTGGGAATGCAGCCACCGCTCCCACCTGAGGCAGTCAGAGAGCTGGTGTGCTCCTGTCTGCACAGAGACCCAGTAGCAGCAGACCTCCGCTGCAGCCTGTTTGTTGCCGCTGCACAGAACTACAAGAGGGACTCTTTGCTCAGACCCTTTCCCCCTCGATACATAAGTGGTGACAATAAGGACTTTGAGGAGCTgTTGGCAGATGTGCACTCTTTGCCTGGTGTGAGAGAGCTGGTGAGACTACGACCCAGAGAGGGAGATCATCATCTGGCTCTCACACACTGGATTCTCTCTTCAAAGAGCTTTGCTGTGAAGACATTACAGAAAGATGAGTATGCCAAACTTTGTAACCTGACGGAAAATGAAGGGATTTCTGCACCTGTGCCAGACTTCCTGTTTGCGCTGGAGTACTGTGATCAGATGAACGCCAGGTTTGAGAAGATGAGGGAAGGTAGAGACGTCTTCTATGCATTCCACGGGAGCCGCCTGGAAAACTTCCACTCAATCATTCACAATGGGCTGCATTGTCACCTCAATAAGAACTCAGTGTTTGGAGAGGGGACCTACCTCACCAGTGACCTCAGCATGGCTGTCCTCTACAGTCCCCACAGCAGCGGCTGGCGAGAGAGTCTCCTGGGTCCACTGCTCAGCTGTGTTGCCTTGTGCGAAGTCATTGATCACCCAGATGTGAAGTGCCAGGTGAAGAAAAAAGATTCTGAAACCATTGACCGTCAGCGCTCAAGAGCAAAGAACAGCGAAGGAGGGGACGTACCGGAGAAGTACTTTGTAGTCACCAACAATCAGCTTTTGCGAGTCAAGTACCTGCTTGTTTACTCTCAGAGGAGGCACCTGTCCAGacGTTCCCGCAGCACATCCTGGCTCCTCAGGCACCATTTTGCCATCATGATGAGTCTCTACCTTCTGCTGCTCATATTCATCGGTGCCTTTAACTCCAACACCTTTGTATCCTTTTGGAACAGACTGTTCAGGTGACAAGACAACAGAAGAGACGGCCTGGATGTTTGTTATCCCCCGTGCCTTCCTGATCACAGACTGACTGGAGGCTTGAGCAAAGATAAAGTTTTATGCACCTTTTATACTGTTTTCTCTCTACAATTGTTCTGTgtttgtacaaatgaaatgggtAATAAGACAATGCTGCATTTTGAAATTGTTATGCAATTTTTCATCTGTAATTTGTTTGGTTTATTAAACACTGTTTTGTCCCTGATAATATCTAATGTGGGTTTAGTCCTGAGAAAACACAGTCCTACTAACCAAAcggttaaaagtaaaaaaacatcaTGTTGTTGAAATAAGTGTACAGCGAAGGGTCAAGCATtaagttgtcttttttttgtttgtttgttaggtCTTAAGTTCGGAGACATATTAGCACATTAACTGATCGCATTGACTCGTTAGCACCAGTGACTCCTGATCTGTTGATCAGGCACTAATGACAATGTGTCCCAGTTTAAATTCTTACTTTGTAATGTTATGATTTTGTGCGACTCAGTTATGGGTAGGGACCTTTTATAACCCATTATTTAAGTGTAACTTTAAGGTATTGAATATAATGGTAAGGTTTAATAAAGGAAAAATATGAGGTTATAAATACATGCATTTGGATCACAAAAAGGCTAATGATAACCTCATTTATAATAATTTCAGATATGcttttaataaactgtatattCGCTTAGGCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG:

id description
K00774 PARP16; poly [ADP-ribose] polymerase 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116589 lncRNA downstream 5619 19616653 ~ 19618046 (-) True G86517
TU116588 lncRNA downstream 5902 19609405 ~ 19617763 (-) False G86517
TU116587 lncRNA downstream 11464 19609405 ~ 19612201 (-) False G86517
TU116606 lncRNA downstream 20422 19601481 ~ 19603243 (-) True G86529
TU116593 lncRNA downstream 74704 19548160 ~ 19548961 (-) True G86519
TU116619 lncRNA upstream 45034 19674923 ~ 19679089 (-) True G86540
TU116624 lncRNA upstream 65106 19694995 ~ 19695815 (-) True G86543
TU116631 lncRNA upstream 94084 19723973 ~ 19725193 (-) True G86549
TU116652 lncRNA upstream 144418 19774307 ~ 19777043 (-) True G86566
TU116662 lncRNA upstream 191651 19821540 ~ 19823373 (-) True G86575
XM_039808102.1 mRNA downstream 25303 19581787 ~ 19598362 (-) True atp8b4
XM_039808104.1 mRNA downstream 25303 19582672 ~ 19598362 (-) False atp8b4
XM_039808103.1 mRNA downstream 28754 19581787 ~ 19594911 (-) False atp8b4
XM_039809015.1 mRNA downstream 49979 19557452 ~ 19573686 (-) False cep152
XM_039808279.1 mRNA upstream 70265 19700154 ~ 19707127 (-) True LOC120563845
XM_039807430.1 mRNA upstream 123515 19753404 ~ 19761910 (-) True LOC120563329
XM_039807429.1 mRNA upstream 123524 19753413 ~ 19761910 (-) False LOC120563329
XM_039807428.1 mRNA upstream 123524 19753413 ~ 19761910 (-) False LOC120563329
XM_039807431.1 mRNA upstream 123621 19753510 ~ 19761910 (-) False LOC120563329
TU116584 other downstream 51743 19570302 ~ 19571922 (-) False cep152
TU116428 other downstream 235090 19387822 ~ 19388575 (-) True G86402
TU116306 other downstream 306255 19315435 ~ 19317410 (-) False arpp19b
TU116123 other downstream 612749 19007196 ~ 19010916 (-) False G86194
unassigned_transcript_376 other upstream 52957 19682846 ~ 19682917 (-) True trnap-agg_7
TU116763 other upstream 622750 20252639 ~ 20259259 (-) True G86638
XR_005640056.1 other upstream 1176993 20806882 ~ 20828603 (-) False LOC120564033
TU117029 other upstream 1247822 20877711 ~ 20879638 (-) False LOC120563850
TU117396 other upstream 2083153 21713042 ~ 21713554 (-) True G87140

Expression Profile