RNA id: XM_039809078.1


Basic Information

Item Value
RNA id XM_039809078.1
length 3836
RNA type mRNA
GC content 0.48
exon number 3
gene id prr33
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 4618326 ~ 4629983 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCATTTATTCTCCAGATGGAGCGCAGGGAAGCTGTTAGCAGTGGCCGACCTCTGCAGCGGGACATCTGACGTGTGTTTGGCCGAGCTCAGGGTGGGGCTTTTGTTTTTGCACCGGCAGGGCTGAGCTAAGCGTTAGCCTGGCACTCTTTCTACTCCCAACACACTCGGCCCTGTCATTTATCTATCTGCACCCAGGCATGAGGGAACCCGCCTGGAGCGCTTTGAACACCAGCGACACGTTTTTACCTGGGTGCTGAAGCGCTCATGGCTGTCGTTTACGGTGCTGCCACCCAGCCGGGCCTGCTTTCCCAGCAGTACCCCCCGCCCCTGCTACCCAAGCCTGGAAAGGACAACGCTCGTCTTCAGAAGCTCCTCAAGAGAACCGCCAAGAAAAAGGCCTCCACTCAGGCATCGCAGCCTGCCGTACTTTTCCGCACCAATCTTTCCCCTGTGAACGAAGCAAGCCCCGACCTCGAGCACAGCGAACACTCCACCCCGCCCAAGACTCCGGAGACACCGTTCAGCCTCTACAACGTCCAGCAGCCTCCGCGGTTCAGCATCAGGCCGCTGTACCGACATGTTGCGTCCCCTTACCCACAGCGTGCAGCTTATGGCAGCGCAGCGAGGTTCTCACCTCAGACAGTGGCCAACGCGTTGTACACTTACTCGCAGAACGTTAACGCAGTTTCTTCATCAGCCCACCTTTATGGAGTTACAACAGCTCCGGGGCCTGTCGCCGAGCTAGCAGTACCAAAAGTATCTGTGGCAGTCTCTTCTGTACCTGAGGCAACAGCACCAGCTGCCGAAATGAAAAAGCCAGCTTTTAGCACACTTGCTGAAACGCCTGCTGGTTTTATACCTTCTGCTGCTTTGATTCGTCCTCTCATTGTGTTAACCCCGCTCGTCAAATCCAAAAGCCCACGTCCAACATTCAAAGCAACCGAACCTTCAAGATCGCCCAAACCGATGTTTGACGTCCCGCAAATTAGGATGTACACGGCGAGCACATCGTACTACGAGTCATCCAGGACCCCACCGGTGTACGACACAGCTGGATTAACCGCTATCGGCAGCACAGTACCTCAGAGTAAAACagcaacagaaacaaaacaagatcTGACTACAGCATCTGAGGTCAGAAGAGGAACGACCCCGACGACTTTGGCTCCTTTGCTGGGCACAGACTCCCAAAGAAAAACTCCAACATCTGAAATCAAAAGAGCAACCCCAACGGCAGAATTCAAAAGAGCTACCCCAACGGCAGAAATCAAAAGAGCTACCCCAACGGCAGAAATCAAAAGAGCTACCCCAACGGCAGAAATCAAAAGAGCTACCCCAACGGCAGAATTCAAAAGAGCTACCCCAACGGCAGAAATCAAAAGAGCTACCCCAACGGCAGAAATCAAAAGAGCTACCCCAACGTCTGAAATCAAAAGAGCTACCCCAACATCTGAAATCAAAAGAGCTACCCCAACATCTGAAATCAAAAGAGCTACCCCAACATCTGAAATCAAAAGAGCTACCCCAACATCTGAAATCAGAGTTAAAACCCCAACTTTTGAGTTACAAACATTAAGAACTTCAGTGGGACGCCCCAGAACCCCATCATACCACAAGAATCGGGCTACAACGCCTGTTTTTGAAGTCTCAAGACCCAATCCTCTCTTGTTTGCTGTGTCGCCGATCACAGTAGAGCCAGAGAGGTCAAGCGTGCCCAAAACGATTTCTGCTGTGAGCAGTTTGCCTGCTTCCCAAAGTGTGACAACTATTGAGACTGAGCCTAAGCCCACCGAAACTATACTGaatggggaaattcattcaGACGTCACTTCTGTAGTCAAACCAATCCCAAAAAGCATTACCAAGTCAAAATCAGAGCCTGATCTGACAAGACAAACTGCTCCAGCTGGCTCTCAGAGACCTATAACTGCCACATCTGAGCCAAAAACACCAGCAGTGACTTCTTTCAGCAATCAGAGGCCTAAGACTCCAACATACGAAGCATCCCGACTCATGACCACGTCACCTGGCTTCAAAAGACCAAAGACGCCTACCTATGGGACATCACCTTCTGGTGCATCATCTGTAGCCTTTCAGAGACCTAAAACCCCAACCCAAGTGGCTCTTAAATCAAAGTCTAGCTACCGTGGATTGACACCTGCTGAATATACGGCTTACGGCGGCATAAGAACTTACTCTCCGGCGTTTGGTATCTCCAGTTCTAAGATGCAAACCGAAGAGATAGAAGCTACAAAAGAGGAATCACCAGAATGTAAAATACCAAGCCAAGAACCGTCTGTGAAGGGCCTATATACGCCCGAGGTGTCTAAAGCCAAAGAAACCCCCAAAGATGTAGATTACCCTCATGTGAGAGATGAGAAGGTTGTCACCACTCCCTCAAtccctattattgttgtttcaCAAGCATCAGACACCTCAGGAACAACGTTAACACAAGAGACAAGTACGGTATCCAGTCAGGTGATTCAAGAAACACCAAAGGCTAAACCAACAACAACAGTGGGGAAAACCCCTGAGAAACAGAAGGTGGAAACACAAGTTGCCAAACCAAAGACAAAACCTCCTGAAGCCAAACACCCTTTGCCCAAAAGTGACGACCAGGATCCTTTGAAGGCAGTAAGAAAACTTTTAGGCAAAGACAAAGTCCAGAAATCTGGAAGTGAGACAAAAGCTGGCGTCTCCGATCAAAAAGAGACAGCGAAACCTGTAGCTGCCACCAAGAGTAACCAAGAAGGCTCAACGCCAAGCACTGCAGCGCCAGCTCTGCCGTCTGCAGCTGAGTCAACAGGAAGTGAAGACAAAGGAAAAGATAAGAAAGCAGAATCAGCTCCAGCAGTGAAATCAGCACCTGAGAAAAAGGAAGGCGATGAATCCCTCCCAGCCGAGCCCCTTCTTAAAGTCACACAAAGGCCAAAGGGAGTGAAATCTAAATTGAGCGGTTGGTCCCGACTCAAAAAGCACATGGTGGTGGAAGAAGAGGAGCCTAAATTTCCAGAGATAGGCCCTCAGAAGGAGGCCGCCGGGCCCAAACAGAGCGAGGCGACAACGACCGGAGAGAAGGCCGTCGACGCGCCTGCCACTCAGGACGATAACCAAACCAACGACGCTCCTATTGCAGCGAAGATGTGGAACGCCGTCCTCTTCCAAATGTTTTCCTCTAAAGAGAACATCATGCACCAGATCGAGCTGAACAAAAGCGAGGACGAGAAGAAGGAAGCGCAAAGTGACGAGCAGAAAGAGATACCTTCGTTTGCGCACCGGCTGCCCGTTCTGCTTTTTAGTCCAAGGTTTGACGCTAAAAAGCTTAAAGAGGCGGCATCGAGGCCGGTGACGAAATTTTCAACCGTTTTTGAAATGGGTCTGATTGGGCGGAAAGGTAAAGATGAGGAACCAAAAGACTTTAATAGAACAGCGAGAGGGTTCGCCGCTACTTAAGCTAATagagtaaaatatataaagtgcCAAGacgaaaatgtaaagaaaaaaaagttacaatatATGTTTAATGTACAGGTGCAAGAAATCGTAGTCCGTGTTAAACGAATGACATGCGTTTGTAGAAGAGTCTGCTTTGAAATTTATACTTGACAAAAGCTTGGTGTTGCATTTGTGTGACTGGTTGTCTGGATGTtaaatgtttgtatttgtggATTAGCTGGAAACAGAAAGAATGCCACATTTTGTCTTAATTCAGACGTCACATCAGATTAAAAGGTTTatgttttcacaaaaaaaaaaaaaaaaaaaaatcagagctTCTCATTTGTTCCTTTcatcacattttcacaaatataGAAATTAATACagattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110963 lncRNA downstream 37495 4580502 ~ 4580832 (-) True G82358
TU110942 lncRNA downstream 68310 4549726 ~ 4550017 (-) True G82342
TU110939 lncRNA downstream 73121 4545007 ~ 4545206 (-) True G82339
TU110938 lncRNA downstream 73417 4543209 ~ 4544910 (-) False G82338
TU110937 lncRNA downstream 74225 4543209 ~ 4544102 (-) True G82338
TU110978 lncRNA upstream 6380 4636219 ~ 4636549 (-) True G82368
TU110979 lncRNA upstream 8324 4638163 ~ 4638441 (-) True G82369
TU110988 lncRNA upstream 42696 4672535 ~ 4673502 (-) True G82374
TU110999 lncRNA upstream 76440 4706279 ~ 4706603 (-) True G82377
TU111000 lncRNA upstream 79304 4709143 ~ 4709480 (-) True G82378
XM_039809099.1 mRNA downstream 490570 4125627 ~ 4127757 (-) True LOC120564250
XM_039809093.1 mRNA downstream 520851 4088684 ~ 4097476 (-) True LOC120564247
XM_039807492.1 mRNA downstream 558085 4019094 ~ 4060242 (-) True slc7a10b
XM_039808859.1 mRNA downstream 608045 3981710 ~ 4010282 (-) True dus2
XM_039808856.1 mRNA downstream 648541 3911044 ~ 3969786 (-) True LOC120564132
XM_039809113.1 mRNA upstream 38643 4668482 ~ 4677370 (-) True LOC120564256
XM_039809114.1 mRNA upstream 51511 4681350 ~ 4690529 (-) True zgc:172145
XM_039809100.1 mRNA upstream 282454 4912293 ~ 4925306 (-) True LOC120564251
XM_039809085.1 mRNA upstream 354841 4984680 ~ 5004204 (-) True afg3l1
XM_039809126.1 mRNA upstream 375523 5005362 ~ 5011941 (-) False urahb
TU110810 other downstream 339968 4276820 ~ 4278359 (-) True G82246
TU110644 other downstream 1039943 3494391 ~ 3578384 (-) True G82147
TU110610 other downstream 1237799 3380027 ~ 3380528 (-) True G82122
TU110247 other downstream 1680337 2937752 ~ 2937990 (-) True G81832
TU110074 other downstream 1933087 2684898 ~ 2685240 (-) True G81738
TU111250 other upstream 374553 5004392 ~ 5011875 (-) True urahb
TU111339 other upstream 850909 5480748 ~ 5483491 (-) False faap24
TU111877 other upstream 2658056 7287895 ~ 7291427 (-) True G83064
XR_005640162.1 other upstream 3945415 8575254 ~ 8575431 (-) True LOC120564825
XR_005640160.1 other upstream 4880103 9509942 ~ 9510071 (-) True LOC120564823

Expression Profile