RNA id: XM_039809079.1


Basic Information

Item Value
RNA id XM_039809079.1
length 3706
RNA type mRNA
GC content 0.49
exon number 4
gene id prr33
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 4618326 ~ 4629983 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCATTTGTGCTGGAAGAGGGTGGGGGGGTCGAGTTGGGCTGGACATGAACCTGCCGCTGTGACACTCCGGGCTGGGACAAGCAGGCAGCAGCCGGCCGGCCGCTCCCCGAGCAGCAGTCGCACAGGGGAACCCGCCTGGAGCGCTTTGAACACCAGCGACACGTTTTTACCTGGGTGCTGAAGCGCTCATGGCTGTCGTTTACGGTGCTGCCACCCAGCCGGGCCTGCTTTCCCAGCAGTACCCCCCGCCCCTGCTACCCAAGCCTGGAAAGGACAACGCTCGTCTTCAGAAGCTCCTCAAGAGAACCGCCAAGAAAAAGGCCTCCACTCAGGCATCGCAGCCTGCCGTACTTTTCCGCACCAATCTTTCCCCTGTGAACGAAGCAAGCCCCGACCTCGAGCACAGCGAACACTCCACCCCGCCCAAGACTCCGGAGACACCGTTCAGCCTCTACAACGTCCAGCAGCCTCCGCGGTTCAGCATCAGGCCGCTGTACCGACATGTTGCGTCCCCTTACCCACAGCGTGCAGCTTATGGCAGCGCAGCGAGGTTCTCACCTCAGACAGTGGCCAACGCGTTGTACACTTACTCGCAGAACGTTAACGCAGTTTCTTCATCAGCCCACCTTTATGGAGTTACAACAGCTCCGGGGCCTGTCGCCGAGCTAGCAGTACCAAAAGTATCTGTGGCAGTCTCTTCTGTACCTGAGGCAACAGCACCAGCTGCCGAAATGAAAAAGCCAGCTTTTAGCACACTTGCTGAAACGCCTGCTGGTTTTATACCTTCTGCTGCTTTGATTCGTCCTCTCATTGTGTTAACCCCGCTCGTCAAATCCAAAAGCCCACGTCCAACATTCAAAGCAACCGAACCTTCAAGATCGCCCAAACCGATGTTTGACGTCCCGCAAATTAGGATGTACACGGCGAGCACATCGTACTACGAGTCATCCAGGACCCCACCGGTGTACGACACAGCTGGATTAACCGCTATCGGCAGCACAGTACCTCAGAGTAAAACagcaacagaaacaaaacaagatcTGACTACAGCATCTGAGGTCAGAAGAGGAACGACCCCGACGACTTTGGCTCCTTTGCTGGGCACAGACTCCCAAAGAAAAACTCCAACATCTGAAATCAAAAGAGCAACCCCAACGGCAGAATTCAAAAGAGCTACCCCAACGGCAGAAATCAAAAGAGCTACCCCAACGGCAGAAATCAAAAGAGCTACCCCAACGGCAGAAATCAAAAGAGCTACCCCAACGGCAGAATTCAAAAGAGCTACCCCAACGGCAGAAATCAAAAGAGCTACCCCAACGGCAGAAATCAAAAGAGCTACCCCAACGTCTGAAATCAAAAGAGCTACCCCAACATCTGAAATCAAAAGAGCTACCCCAACATCTGAAATCAGAGTTAAAACCCCAACTTTTGAGTTACAAACATTAAGAACTTCAGTGGGACGCCCCAGAACCCCATCATACCACAAGAATCGGGCTACAACGCCTGTTTTTGAAGTCTCAAGACCCAATCCTCTCTTGTTTGCTGTGTCGCCGATCACAGTAGAGCCAGAGAGGTCAAGCGTGCCCAAAACGATTTCTGCTGTGAGCAGTTTGCCTGCTTCCCAAAGTGTGACAACTATTGAGACTGAGCCTAAGCCCACCGAAACTATACTGaatggggaaattcattcaGACGTCACTTCTGTAGTCAAACCAATCCCAAAAAGCATTACCAAGTCAAAATCAGAGCCTGATCTGACAAGACAAACTGCTCCAGCTGGCTCTCAGAGACCTATAACTGCCACATCTGAGCCAAAAACACCAGCAGTGACTTCTTTCAGCAATCAGAGGCCTAAGACTCCAACATACGAAGCATCCCGACTCATGACCACGTCACCTGGCTTCAAAAGACCAAAGACGCCTACCTATGGGACATCACCTTCTGGTGCATCATCTGTAGCCTTTCAGAGACCTAAAACCCCAACCCAAGTGGCTCTTAAATCAAAGTCTAGCTACCGTGGATTGACACCTGCTGAATATACGGCTTACGGCGGCATAAGAACTTACTCTCCGGCGTTTGGTATCTCCAGTTCTAAGATGCAAACCGAAGAGATAGAAGCTACAAAAGAGGAATCACCAGAATGTAAAATACCAAGCCAAGAACCGTCTGTGAAGGGCCTATATACGCCCGAGGTGTCTAAAGCCAAAGAAACCCCCAAAGATGTAGATTACCCTCATGTGAGAGATGAGAAGGTTGTCACCACTCCCTCAAtccctattattgttgtttcaCAAGCATCAGACACCTCAGGAACAACGTTAACACAAGAGACAAGTACGGTATCCAGTCAGGTGATTCAAGAAACACCAAAGGCTAAACCAACAACAACAGTGGGGAAAACCCCTGAGAAACAGAAGGTGGAAACACAAGTTGCCAAACCAAAGACAAAACCTCCTGAAGCCAAACACCCTTTGCCCAAAAGTGACGACCAGGATCCTTTGAAGGCAGTAAGAAAACTTTTAGGCAAAGACAAAGTCCAGAAATCTGGAAGTGAGACAAAAGCTGGCGTCTCCGATCAAAAAGAGACAGCGAAACCTGTAGCTGCCACCAAGAGTAACCAAGAAGGCTCAACGCCAAGCACTGCAGCGCCAGCTCTGCCGTCTGCAGCTGAGTCAACAGGAAGTGAAGACAAAGGAAAAGATAAGAAAGCAGAATCAGCTCCAGCAGTGAAATCAGCACCTGAGAAAAAGGAAGGCGATGAATCCCTCCCAGCCGAGCCCCTTCTTAAAGTCACACAAAGGCCAAAGGGAGTGAAATCTAAATTGAGCGGTTGGTCCCGACTCAAAAAGCACATGGTGGTGGAAGAAGAGGAGCCTAAATTTCCAGAGATAGGCCCTCAGAAGGAGGCCGCCGGGCCCAAACAGAGCGAGGCGACAACGACCGGAGAGAAGGCCGTCGACGCGCCTGCCACTCAGGACGATAACCAAACCAACGACGCTCCTATTGCAGCGAAGATGTGGAACGCCGTCCTCTTCCAAATGTTTTCCTCTAAAGAGAACATCATGCACCAGATCGAGCTGAACAAAAGCGAGGACGAGAAGAAGGAAGCGCAAAGTGACGAGCAGAAAGAGATACCTTCGTTTGCGCACCGGCTGCCCGTTCTGCTTTTTAGTCCAAGGTTTGACGCTAAAAAGCTTAAAGAGGCGGCATCGAGGCCGGTGACGAAATTTTCAACCGTTTTTGAAATGGGTCTGATTGGGCGGAAAGGTAAAGATGAGGAACCAAAAGACTTTAATAGAACAGCGAGAGGGTTCGCCGCTACTTAAGCTAATagagtaaaatatataaagtgcCAAGacgaaaatgtaaagaaaaaaaagttacaatatATGTTTAATGTACAGGTGCAAGAAATCGTAGTCCGTGTTAAACGAATGACATGCGTTTGTAGAAGAGTCTGCTTTGAAATTTATACTTGACAAAAGCTTGGTGTTGCATTTGTGTGACTGGTTGTCTGGATGTtaaatgtttgtatttgtggATTAGCTGGAAACAGAAAGAATGCCACATTTTGTCTTAATTCAGACGTCACATCAGATTAAAAGGTTTatgttttcacaaaaaaaaaaaaaaaaaaaaatcagagctTCTCATTTGTTCCTTTcatcacattttcacaaatataGAAATTAATACagattaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110963 lncRNA downstream 37494 4580502 ~ 4580832 (-) True G82358
TU110942 lncRNA downstream 68309 4549726 ~ 4550017 (-) True G82342
TU110939 lncRNA downstream 73120 4545007 ~ 4545206 (-) True G82339
TU110938 lncRNA downstream 73416 4543209 ~ 4544910 (-) False G82338
TU110937 lncRNA downstream 74224 4543209 ~ 4544102 (-) True G82338
TU110978 lncRNA upstream 6236 4636219 ~ 4636549 (-) True G82368
TU110979 lncRNA upstream 8180 4638163 ~ 4638441 (-) True G82369
TU110988 lncRNA upstream 42552 4672535 ~ 4673502 (-) True G82374
TU110999 lncRNA upstream 76296 4706279 ~ 4706603 (-) True G82377
TU111000 lncRNA upstream 79160 4709143 ~ 4709480 (-) True G82378
XM_039809099.1 mRNA downstream 490569 4125627 ~ 4127757 (-) True LOC120564250
XM_039809093.1 mRNA downstream 520850 4088684 ~ 4097476 (-) True LOC120564247
XM_039807492.1 mRNA downstream 558084 4019094 ~ 4060242 (-) True slc7a10b
XM_039808859.1 mRNA downstream 608044 3981710 ~ 4010282 (-) True dus2
XM_039808856.1 mRNA downstream 648540 3911044 ~ 3969786 (-) True LOC120564132
XM_039809113.1 mRNA upstream 38499 4668482 ~ 4677370 (-) True LOC120564256
XM_039809114.1 mRNA upstream 51367 4681350 ~ 4690529 (-) True zgc:172145
XM_039809100.1 mRNA upstream 282310 4912293 ~ 4925306 (-) True LOC120564251
XM_039809085.1 mRNA upstream 354697 4984680 ~ 5004204 (-) True afg3l1
XM_039809126.1 mRNA upstream 375379 5005362 ~ 5011941 (-) False urahb
TU110810 other downstream 339967 4276820 ~ 4278359 (-) True G82246
TU110644 other downstream 1039942 3494391 ~ 3578384 (-) True G82147
TU110610 other downstream 1237798 3380027 ~ 3380528 (-) True G82122
TU110247 other downstream 1680336 2937752 ~ 2937990 (-) True G81832
TU110074 other downstream 1933086 2684898 ~ 2685240 (-) True G81738
TU111250 other upstream 374409 5004392 ~ 5011875 (-) True urahb
TU111339 other upstream 850765 5480748 ~ 5483491 (-) False faap24
TU111877 other upstream 2657912 7287895 ~ 7291427 (-) True G83064
XR_005640162.1 other upstream 3945271 8575254 ~ 8575431 (-) True LOC120564825
XR_005640160.1 other upstream 4879959 9509942 ~ 9510071 (-) True LOC120564823

Expression Profile