RNA id: XM_039809113.1


Basic Information

Item Value
RNA id XM_039809113.1
length 3548
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120564256
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 4668482 ~ 4677370 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGACAGGACTCTACATTCCCCCAGAAAACTAACTCTCTCAAACTCCATCTCTCCATCATTTCTCCTTTTTCCTGAAAAGTTTgtgggtttttctttttttttgggttcTGTCCCTGCAGACATTTTCTACCCCGTTCCCCCTGGGATTTTGTTTTAGGTTTTCTGGTACCCTGAGCCATGGAGCTGTCGGATATCTCTTTCCCCATCCCCGCCGCGGATGACTTCTACGACGACCCGTGCTTCAACACGAGCGACATGCGCTTCTTCGAGGACCTGGACCCGCGGCTGGTCCACGCGGGGCTCCTGAAGCCGGacgactcctcctcctccccctgttGCTCCCCGTCgccctccccttcctcctcccccacctcctcctccccggAGGAGCACGTCCGCGCGCCCAGCGGCCACCACCAGGCGGGCCGCTGCCTGCTCTGGGCCTGCAAGGCCTGCAAAAGGAAGACCACCAACGCGGACCGGCGGAAGGCGGCCACGATGCGCGAGCGCCGCCGGCTCGGCAAGGTCAACGACGCCTTCGAGACGCTGAAGCGCTGCACGTCGGCGAACCCGAACCAGCGGCTGCCCAAGGTGGAGATCCTGCGCAACGCCATCAGCTACATCGAGTCGCTGCAGGCGCTGCTGCGGGGCGGACAAGACGACGGCTTCTACCCGCCGCTGGAGCACTACAGCGGGGACTCGGACGCCTCCAGCCCGCGCTCCAACTGCTCCGACGGCATGaCGGATTTCTCCGGCCCGACCTGCCACTCAAACAGAAGAGGAAGTTACGACAGCTCTTATTTCTCAGAAACTCCAAACGGCGGTCTGAAGAGTAACCGCAGCTCGGTGGTCTCCAGCCTGGACTGTCTGTCCAGCATCGTGGAGCGGATCTCCACCGACGCCAGCAGCCTGCTGCCGCCCGACGGCCCCGGGACCTCGCCATCCGACCCAGCTGGCGAGGCGGTAGCGGCAGCGGCCCCGGGGCCCGTCCGGGTCCCCTCCCCGACAGCCAGCCACAACCCCAACCTCATCTACCAAGTCCTATAGACCCCTCACAGCCTAACCGTGCGCTCACAGCGTCCACTCACACCACCGGGAAAATAACACTTTCACTcactttcattttgaaaaagatTTCGGGCTGAACCGAATCCTCACAACCTGTTTACAGCAGCGGTTAAgttttatcatttaaaaaaactaaagtaaTCTGGTTTTAGTTCCCTTTTtaacagtggtgtagtctaatgtattctagtgggtatactgtaccatATAtaagaatctgcctttggggggcatatcatagtggggggtctgagTGTCCTCCCCAgagaagttttgagcatcaaagacttaatttcctgtactccgatacacttttatgccccaatttatggtggaaatgcCTTTATTTTGTGTAGAAGAAAACCACAGATGACAATATATGAAAAAtctaatggaaagtatgttgttgcgtgccATTGGGGCATTTTAAAGTGGGTCTATGGAAATCCTGGcactttcttagtgggtatactgcgtatacctgcgtatcacgtagactacaccactggttttTAAGATGAAAAGTATGGAAGCTCAATCCTGCCGAGAAGATgacaataataattaaaaacaataacaataattgaATTTGAAAAGATCATTCGTAACTTTTTCGGTTCTTTTAGCAACGCGTTCTCGtgaacgggttcgtatgatGTATCGCACGAAAACTTGAGCACATCAACTCGtacgatatcctacgaaattctgaccgccggctggtcacgtgacagttaagtttagccggGAAAAAGTGACTGTGAGTCGGGTACAGAGTACCGTGAGGGGACGGGCGTTTCAGAGGCCAtagcagttaagtttagacaccaaaacgacaagttaagattagaaaaaagattgtgtttTGGGTTAAAACAGCGGTTCCCTTAAGTAGAAACTCCCGGAACACAACCCAAATATCCCCCATAACTGCGATAGAAAGATCTGGAAATGAGCCTCGAGGTTACCTAGGCTACCTTACTTAATTCAACAGCTTTAAAATTCAGAAACATATCAAGGTGTCGGTGACAATTGATAATCACTCTGAATAATAGTTACAAGATAAAGTCGGAGCTACTAATCAGTTATATATCATTAATTAAATTTggactcttattttgaaaatgtttagaatacttttttttatttattcaatgtTTGACGCTCCTTTTGAAGTTTTTTGTCACAACATTTATATCACACTTTTGTCGACGTTTTTCCGACATCTGACACTGTCGTTTTTGACTCTTTAACTGgaaaattgattttaaaagaaaacaaaaaagtggGACGCTTTTATCATTTATAAGTTTCCAAATGTTTGATTTAAGTATTTTCCTGGCAGGAATCATCTTCCATACTTGAGCATATTTGACCCCGCAAATTCTCGTTCATGCTGTTTAAAATAAGTACATTTTagatttagataaaaaaaaataaaaaaataaaaaacacttgaATGCTGGGAAATGTAGTTTAACTGACGAACACAAATAAGTTCAGTTCTTGctgttatttttaaaattttattttaagttaTGAAAGAATAGTTGAAAGGCTCAGCGGGAGTCGTTGAGACGGATTTTTCTTCCTATCTGTCCAAAAGTCTTTTTTTGAGGAAGGACGGAGGCCAAAataaccccccccaaaaaaaatccatttacATTCCTCCACTTTCGTCCATCTAAAGtcgtaaaaaataaataaaaataagccCCAGCTGTTTTTAATTCCCTCAGGTAGAAAACCCCCAAAAACGATAACCCTGTGATATTTTTAGAAACATGTCATACAATAtaacagattctcactcccatctggtaaaatacagacgcttggtcaggtgcctttgtcgttgttattgacgctaaaagccTCCTTTAGCGTCATCTAAAAACGAGCTTGGTCCTGAACCAGACTCCCTACACAGAATTTCGACCTTGCATACTACTCGCCACCGTGGTCGTTCTTAGGGTTACGTCATCTTCAAGCgccgtgtagctgctgctctcccaggtgcgttctacaaacacgctgaagggcgccTTTTTACAAATCGCTTCAGGCACTGACAGCCACAGCCCAAATGTTCGTATTTTACAACTTCCGAGTGAGAACAGGTTGAAAATAACGCAGATTTTCTGTAGAAAAACTGCAGGTAAATCAGAAATAATTTGGGgttgaagttgttttttttttaaagatcttcCTTCctgtcaaaacaaaaaacttaatTCATTTGTCGCTTTCATTCACTGCAGCGAAGGACcacttttctgtttctgtacaTATTGTGTAAATAAGAGCTGATTTGTTCCAACTGAAAGTATTAATTATGTATTTAATGTTTCCGGCCCtatgtgctttttttcttttgtttgttgtgaAAATGTTAAACTTTATATTTATACGTCTGAAAACTGAGTGACTGTCAAATGACTCAATAAATGAGAACTGCTTTATTTATACAAAACCATAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007517 muscle organ development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09064 MYOD1, MYF3; myogenic factor 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110979 lncRNA downstream 30041 4638163 ~ 4638441 (-) True G82369
TU110978 lncRNA downstream 31933 4636219 ~ 4636549 (-) True G82368
TU110963 lncRNA downstream 87650 4580502 ~ 4580832 (-) True G82358
TU110942 lncRNA downstream 118465 4549726 ~ 4550017 (-) True G82342
TU110939 lncRNA downstream 123276 4545007 ~ 4545206 (-) True G82339
TU110999 lncRNA upstream 28909 4706279 ~ 4706603 (-) True G82377
TU111000 lncRNA upstream 31773 4709143 ~ 4709480 (-) True G82378
TU111223 lncRNA upstream 80779 4758149 ~ 4765669 (-) True G82554
TU111229 lncRNA upstream 110889 4788259 ~ 4788463 (-) True G82560
TU111242 lncRNA upstream 181886 4859256 ~ 4859940 (-) True G82572
XM_039809080.1 mRNA downstream 38499 4618326 ~ 4629983 (-) False prr33
XM_039809079.1 mRNA downstream 38499 4618326 ~ 4629983 (-) False prr33
XM_039809077.1 mRNA downstream 38499 4618327 ~ 4629983 (-) False prr33
XM_039809078.1 mRNA downstream 38643 4618327 ~ 4629839 (-) True prr33
XM_039809099.1 mRNA downstream 540725 4125627 ~ 4127757 (-) True LOC120564250
XM_039809114.1 mRNA upstream 3980 4681350 ~ 4690529 (-) True zgc:172145
XM_039809100.1 mRNA upstream 234923 4912293 ~ 4925306 (-) True LOC120564251
XM_039809085.1 mRNA upstream 307310 4984680 ~ 5004204 (-) True afg3l1
XM_039809126.1 mRNA upstream 327992 5005362 ~ 5011941 (-) False urahb
XM_039809127.1 mRNA upstream 327992 5005362 ~ 5011912 (-) False urahb
TU110810 other downstream 390123 4276820 ~ 4278359 (-) True G82246
TU110644 other downstream 1090098 3494391 ~ 3578384 (-) True G82147
TU110610 other downstream 1287954 3380027 ~ 3380528 (-) True G82122
TU110247 other downstream 1730492 2937752 ~ 2937990 (-) True G81832
TU110074 other downstream 1983242 2684898 ~ 2685240 (-) True G81738
TU111250 other upstream 327022 5004392 ~ 5011875 (-) True urahb
TU111339 other upstream 803378 5480748 ~ 5483491 (-) False faap24
TU111877 other upstream 2610525 7287895 ~ 7291427 (-) True G83064
XR_005640162.1 other upstream 3897884 8575254 ~ 8575431 (-) True LOC120564825
XR_005640160.1 other upstream 4832572 9509942 ~ 9510071 (-) True LOC120564823

Expression Profile