RNA id: XM_039809114.1



Basic Information


Item Value
RNA id XM_039809114.1
length 887
RNA type mRNA
GC content 0.63
exon number 4
gene id zgc:172145
representative True

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 4681350 ~ 4690529 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAAGCCAAATACACCGGATGACTATGAGCAGCTGACCGGGAAACAGTTGATCCCCGCGGGCTAAATTTATCCTCTGTTGACGGTTCAAGTCGGCTGGAAGAAGAAGACGCAGATCGGGCAGTTTATTACCAATAGTACTAGGCTACACCTCTGCAGCCGGGGAGTTGTGTGAGTAAAGTATCCGGACTCTGTGCTTCTCCGGGATCAGTGGGATAACCGGGCGGTGACATATGGCTGCTGAGCCCGCGGGAAAGAGGTTAAAGAGCGGCCTGCCGCTGTGCGCAGCGCACCGGAGCTCCGCGGGCAGCCGGGCCAGACACAACCTGCAGGCCGCCGTGGAAGAGGCTCTGTGCGGGATGAGCAGCCTGCTGTGGGACGGAGCGTACCGGCTGCAGGCTCTGGCCAGTGTGTTTGAGCGAGACGACGCCGCTCTGCCGCGCGTCGCTTCTTTCTTCCACCAGGAGGCGCTGAAGCAGCGGGAGGAGGCCGAGGCCATGCTGGGCTACCTGGCTGAGAGAGGGGGCAACTACTGCACCAAGGACATCCAGAAGCCGGGCTGTGAGGCCGTGTGCTCGGTGCTGCCGGctctggagctgctgctgctccagctGAAGGAGGAAGCCGGCGCGCTGGTCGAGCTGAGCCAGCTCGCCCGTAACCACGGAGACCCGCACACAGCCAGCGTCGTGAAGAGCCACTTCCTGGCGCCGCGGGTGGACCGCCTCAAAGCGCTGGGAGACCTGCTGACCAGCGCCTGGCGGCTGGGCTGCACCAGCGACCAGACGGGGGCGGGGGGGTTCGGGGAGTACATCCTGAACCAGCTGCAGGACGAGCTCGCCAGATGATCTGAatttGAGGACGGAAATGtccccacagcccaatggtac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110988 lncRNA downstream 7848 4672535 ~ 4673502 (-) True G82374
TU110979 lncRNA downstream 42909 4638163 ~ 4638441 (-) True G82369
TU110978 lncRNA downstream 44801 4636219 ~ 4636549 (-) True G82368
TU110963 lncRNA downstream 100518 4580502 ~ 4580832 (-) True G82358
TU110942 lncRNA downstream 131333 4549726 ~ 4550017 (-) True G82342
TU110999 lncRNA upstream 15750 4706279 ~ 4706603 (-) True G82377
TU111000 lncRNA upstream 18614 4709143 ~ 4709480 (-) True G82378
TU111223 lncRNA upstream 67620 4758149 ~ 4765669 (-) True G82554
TU111229 lncRNA upstream 97730 4788259 ~ 4788463 (-) True G82560
TU111242 lncRNA upstream 168727 4859256 ~ 4859940 (-) True G82572
XM_039809113.1 mRNA downstream 3980 4668482 ~ 4677370 (-) True LOC120564256
XM_039809080.1 mRNA downstream 51367 4618326 ~ 4629983 (-) False prr33
XM_039809079.1 mRNA downstream 51367 4618326 ~ 4629983 (-) False prr33
XM_039809077.1 mRNA downstream 51367 4618327 ~ 4629983 (-) False prr33
XM_039809078.1 mRNA downstream 51511 4618327 ~ 4629839 (-) True prr33
XM_039809100.1 mRNA upstream 221764 4912293 ~ 4925306 (-) True LOC120564251
XM_039809085.1 mRNA upstream 294151 4984680 ~ 5004204 (-) True afg3l1
XM_039809126.1 mRNA upstream 314833 5005362 ~ 5011941 (-) False urahb
XM_039809127.1 mRNA upstream 314833 5005362 ~ 5011912 (-) False urahb
XM_039808575.1 mRNA upstream 477957 5168486 ~ 5222677 (-) True LOC120564005
TU110810 other downstream 402991 4276820 ~ 4278359 (-) True G82246
TU110644 other downstream 1102966 3494391 ~ 3578384 (-) True G82147
TU110610 other downstream 1300822 3380027 ~ 3380528 (-) True G82122
TU110247 other downstream 1743360 2937752 ~ 2937990 (-) True G81832
TU110074 other downstream 1996110 2684898 ~ 2685240 (-) True G81738
TU111250 other upstream 313863 5004392 ~ 5011875 (-) True urahb
TU111339 other upstream 790219 5480748 ~ 5483491 (-) False faap24
TU111877 other upstream 2597366 7287895 ~ 7291427 (-) True G83064
XR_005640162.1 other upstream 3884725 8575254 ~ 8575431 (-) True LOC120564825
XR_005640160.1 other upstream 4819413 9509942 ~ 9510071 (-) True LOC120564823

Expression Profile