RNA id: XM_039809178.1


Basic Information

Item Value
RNA id XM_039809178.1
length 2282
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC120564327
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13016565 ~ 13026368 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacacacacacacacactggttctTGTCAGAGGAGGAGCGACATCAAAATCGGGTTActttctgcttctctctctgctccagtGTGTCGACAGAGGTGAGAGTAACATGGACCAAACTAAAACAGCTCATCCATGTCATTCCCAGCAGATAAGGTTTTGTACAGATGCTATTCGAGCCTGAAACATCTGTGAGAAGGATATCCAAAACCAGACAGTATGGACACTCTGAATTTCTCCCACACTACCAACATCAGCAGCGATGATAACACCGGCCTCTTCTCTGGAAGCCCTTACTCGACTGTGGAGATTGTACTCATCATCCTGGTGGCTGGATCTCTGAGTCTGATCACCATCATTGGAAACATCCTGGTCATGCTCTCTATAAAGGTAAACAGGAATCTGCAGACTGTCAACAActacttcctgttcagcctggcCTGTGCTGACCTCATTATTGGCGTCTGCTCCATGAACCTCTACACTGTCTATATTGTAATTGGCTACTGGCCCTTGGGAGCAGTGGTGTGTGACCTGTGGTTGGCTGTTGATTATGTTGTCAGCAACGCCTCAGTCATGAACCTGCTCATCATTAGTTTTGACCGTTACTTCTGTGTCACCAAACCGCTCAGCTACCCAGCGCGCCGCAGCACCAAGATGGCGGGTCTGATGATTGCCGCTGCCTGGGTCTTGTCCTTCATCCTGTGGGCTCCAGCTATTTTGTTCTGGCAGTTCATTGTGGGTGGGAGAACCGTGCCGCCAGGTGAGTGCTACATCCAGTTCTTCTCAAACCCTGCGGTGACGTTTGGGACAGCCATAGCAGCTTTTTACCTACCAGTAGCCATCATGATCTACCTCTACTGGCGCATCTCCAAGGCCAGCCGCAGCCGCATGAGGAGGGACAGCAGGAAGACCTCAGGTACCAGTCTGGGAGAGGGCCCCTCTCACAGCCAGGAGGATGGATGTGAGAGCCAGAACAACTGCATTACAACAAGAGATACTCAGGTGGAGCCTGGAGATGAGAAGGAAAAGTTGCAGCAGCAGAACGGAAGCAGACCATGTCAGGAAGAAAGAACTGACCAGGTGGACTCCAAGGCAGATAGCAACCAGGCTTCAACGTCTAAGGACACTGCAGCCCCTGCGTTATTACAGAAAGGCTTAAATGGTGGGAAACAGACAAGTCAAACACAGCCACCTTCTCCGCAGAATTCAGCAGCTGACAGACAAAGTATGGCCACAAGGACACTGTTCAAGGTGACGAAACAGAGTGCTGTAGCAAAATGGAAAAGGAAGGGCATTTCTTCCAGGGAGAAAAAGGTGACGCGCACCATCATGGCCATCTTGGTTGCTTTTGTTGCCACATGGACACCGTACAACGTGATGGTCCTGATCAATACCTTCTGTTCCATCTGCATCCCAAACTCCCTCTGGACCATCGGCTACTGGCTCTGCTACATCAACAGCACAATCAACCCAGCCTGCTACGCCCTCTGCAACACCACCTTCAAAAACACCTTCAAGCACCTGCTGCTGTGCCAATACAAGAATATACGTACAGCACgatgaatgttaaaaaaaatgctgacGCATGTTTGTTATAATGTGATAAATCTTGTAAACTGAGATGACAAATATTGGAGTGAACATATTGTTAAAataaagactgtgtgtgtgtgtatgtgtgtgtgcgtgtgtgtgtgtgtgtttagtgtccAGTTAGATTTGTCATATTAAGATAATGACATCCGTAATCCATGTTGTTGTGAAATAAGCCGAAATGTGATAATTGTCCGTATTTAACCCTCTTTCATGTATTATTACATGTTTTCTATAAATACAAGGGATAATGACAGAAAATGTAGTTTAGAGTCAGTTTACTTTGTCAAAACTTCAAAAAAACTGGTTTCACCAACGCATTAGGATTTAGCTCGGCATCCTATCTTTTGCCCGATTCCTGCTGAGCTTCTGCTTGACGGGAAGAATTACACACTGCACCACAAAAAAGTGCAGTACACTGGAGGAAACAGGGGAAACCCTAAGACGCAATGCCTTTTTGTACCTGTAACCATCTTCCGCAGCAAAGTGTGTCATCTCTACAGGAGATTATTGGAAACTATAGCTTCATTCTACCTAGTTAGAAGAAGGAGCAAGCATAGTAtacaaatgtcatttatttgttGCTAGTAGCTACTTACCCAAGCTATGCTATGTTTGTCCTTTTCTGACTGACTCACTTCTTTTTTCTTATATAACTCCCTCCTAAACAAGAATAAA

Function

GO:

id name namespace
GO:0007213 G protein-coupled acetylcholine receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016907 G protein-coupled acetylcholine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113597 lncRNA downstream 32505 12972389 ~ 12984060 (-) True G84376
TU113591 lncRNA downstream 67642 12948661 ~ 12948923 (-) True G84370
TU113590 lncRNA downstream 67956 12948274 ~ 12948609 (-) True G84369
TU113560 lncRNA downstream 77148 12938044 ~ 12939417 (-) True G84350
TU113547 lncRNA downstream 106619 12908967 ~ 12909946 (-) True G84338
TU113690 lncRNA upstream 166901 13193269 ~ 13193706 (-) True G84446
XR_005640039.1 lncRNA upstream 174575 13200943 ~ 13201663 (-) True LOC120563976
TU113816 lncRNA upstream 208805 13235173 ~ 13235410 (-) True G84532
TU113817 lncRNA upstream 210283 13236651 ~ 13236861 (-) True G84533
TU113832 lncRNA upstream 220460 13246828 ~ 13249798 (-) False prr5a
XM_039807480.1 mRNA downstream 1590 13002120 ~ 13014975 (-) True LOC120563354
XM_039807481.1 mRNA downstream 1590 13003698 ~ 13014975 (-) False LOC120563354
XM_039807482.1 mRNA downstream 3062 13002120 ~ 13013503 (-) False LOC120563354
XM_039807483.1 mRNA downstream 3062 13003698 ~ 13013503 (-) False LOC120563354
XM_039808886.1 mRNA downstream 42156 12965964 ~ 12974409 (-) True LOC120564144
XM_039808101.1 mRNA upstream 121479 13147847 ~ 13152704 (-) True LOC120563727
XM_039809918.1 mRNA upstream 129043 13155411 ~ 13158096 (-) True kxd1
XM_039809640.1 mRNA upstream 132945 13159313 ~ 13166108 (-) True sinhcaf
XM_039809220.1 mRNA upstream 140950 13167318 ~ 13187582 (-) True LOC120564344
XM_039809829.1 mRNA upstream 162109 13188477 ~ 13192744 (-) True armc10
TU113260 other downstream 872019 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1128167 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2353887 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2584421 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 2836568 10174824 ~ 10179997 (-) False tdg.2
TU113814 other upstream 204249 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 547463 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 1004736 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 1196882 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1475592 14501960 ~ 14507201 (-) False LOC120563775

Expression Profile