RNA id: XM_039809246.1


Basic Information

Item Value
RNA id XM_039809246.1
length 1776
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC120564359
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 23653545 ~ 23663803 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCCTGAGTCTCCTCTCAGTCCCACGGCAGCCCGTCAAACCCCAGCCAGCAGCCTCCTCAGTCACACAGACATCGGTGCAAGAGAGAGAGTAGCTAATGGGGACTCCTGCAGTGGAGTGAGTGGTGAAAACTTGCAGAGTCTCCACCATAAACAGGTGTTTGTGGCTATGATGGCTCCTCAGCAGATGCAGCAGCTCCTTTCCTCCAACCAGCTGCAGGCTCTCATTCACCAGAAGCAACAAGCCCTTCTGCTCCAGCAGCAACATCTGAAAGAGTTTTACAAGAAGCAACAACAGATTCACCTGCAGCTGCTTCAACAAAAGCCCAGCAAGAAAGTCAAAGAGTTCCCTGCACAGCAGCTTGTGTTCCAGCAgctcctccagcagcagcagcagcagcagcagcagcagctcctccGGGTGCAGAGACCCATCCTGTCCTCCCCCGCCCTCTCTCCAGctggtTTTAGCCCTGCAAAGATGCAGCAGATATGGAAAGAGCTCACAAACGGAATAACTGAAGATAAAACCACATCGAAAGACAATCAGGACTCTTCTGCTACCAACATAATGTCAACAAAAGTCACAGGGAGGCAGACCGGTGACCAGCAGTCGTCTTCTCCTCGCAGGGCACAATGTGCTGTCAAAGCTGATCGCGCTGCCGCACACGCTCTCTACAGTCACGGTGTGTGTCACTGGCCCGGATGTGAGTCGGTGTGTGAAAACTTCAGCCAGTTCATCAAGCACATAGGCAGCGAGCACACTCTGGATGATAGAAATACAGCACAGTGCAGAGTCCAGATGCAGGTGGTTCAGCAACTTGAGCTTCAGCTCTGCAAAGAACGGGAGCGTCTCCGAGCGATGATGGCTCACCTGCATCTGCCATCTTTAGAATCTCAGTTGATCTCTGCACCCGCAAGTCTACAGTTGCCACAATCTGATACGGCTGCTGACCCACACGGTCTTCAGCTCAGTTTAGTCACCGGCACCCACAACCTGGCCTCGCCGAGCCCGTCAGACTCCCCACAACCTCTGGCCTCTGTTAGCACTCCATCCCAGGGGAGTGAAGAAGAGTGTGCTGGGGCCATAAGATGTCGTCATCACCCTTTGGTCTACTCCCTGTCTTCAGAAAATGAATATGAGCTTTACAAGAACACCGATATCAGACCACCTTTCACCTACGCAACACTGATAAGACAGGCCATTATGGAAACATCAGACATGCAACTAACACTAAACGAGATATACAACTGGTTCACACGGACATTTGCTTATTTCAGACGCAACGCCGCCACTTGGAAGAACGCAGTGCGCCACAACCTGAGCCTGCACAAGTGTTTTGTGCGTGTGGAGAATGTGAAAGGCGCAGTGTGGACAGTAGACGAGGTGGAATACCAGAGGAGGAGATCCCAGAAGATCCCAGGGAGTCCATCGCTGATAAAAAATGTGTCCTCCAGCCTTGATTTTGGGACGGTTCTGAATGCCAGCTTACAGACGGCACTGGCTGAGGCGTCACTGCCAGGATTCAAGAAGGAGTGTGTGAGCAGAAACTCCACGAGTCAAACGCAGGAGAACAAAGCAACAAACAGCAACACTAAACAAAACTTCTCTCCACCAGTCCAGCAGTCTCTTTTCCTTAAAGGCCAAGCGCTGAATCTGAATGACCAAGAATCTCTGATGGCCACAGTAAAGCCAGCCATACTGCCGCGCGACATGACTGAAGATTATGAAGAACATTTTTTTGACCCTGAATGACAAGAGAACGCTTTCAGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118029 lncRNA downstream 23260 23629726 ~ 23630285 (-) True G87596
TU117898 lncRNA downstream 235692 23415763 ~ 23417853 (-) False LOC120564579
TU117845 lncRNA downstream 415013 23231238 ~ 23238532 (-) True G87469
TU117844 lncRNA downstream 428904 23198588 ~ 23224641 (-) True LOC120563856
XR_005640017.1 lncRNA downstream 436407 23198572 ~ 23217138 (-) False LOC120563856
TU118056 lncRNA upstream 16945 23680748 ~ 23737505 (-) True G87614
TU118160 lncRNA upstream 374081 24037884 ~ 24039901 (-) True G87695
TU118158 lncRNA upstream 378655 24042458 ~ 24043739 (-) True G87693
TU118202 lncRNA upstream 695190 24358993 ~ 24359284 (-) True G87733
TU118217 lncRNA upstream 920555 24584358 ~ 24584608 (-) True G87748
XM_039808217.1 mRNA downstream 3168 23647381 ~ 23650377 (-) True LOC120563807
XM_039807477.1 mRNA downstream 68978 23577578 ~ 23584567 (-) False LOC120563353
XM_039807479.1 mRNA downstream 68978 23577578 ~ 23584567 (-) False LOC120563353
XM_039807478.1 mRNA downstream 68978 23577578 ~ 23584567 (-) False LOC120563353
XM_039807476.1 mRNA downstream 68978 23577578 ~ 23584567 (-) True LOC120563353
XM_039809958.1 mRNA upstream 32230 23696033 ~ 23733655 (-) True ptdss2
XM_039809957.1 mRNA upstream 32230 23696033 ~ 23732295 (-) False ptdss2
XM_039809960.1 mRNA upstream 35357 23699160 ~ 23732297 (-) False ptdss2
XM_039809959.1 mRNA upstream 36603 23700406 ~ 23732297 (-) False ptdss2
XM_039809456.1 mRNA upstream 216488 23880291 ~ 23893596 (-) True LOC120564460
TU117944 other downstream 154886 23494330 ~ 23498659 (-) True G87538
XR_005639990.1 other downstream 947349 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other downstream 947349 22691048 ~ 22706196 (-) False parvg
TU117418 other downstream 1914217 21735006 ~ 21739328 (-) True LOC120564778
TU118073 other upstream 75179 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 241299 23905102 ~ 23905173 (-) True trnam-cau_7
XR_005640032.1 other upstream 245366 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other upstream 245366 23909169 ~ 23916202 (-) False LOC120563922
unassigned_transcript_380 other upstream 252031 23915834 ~ 23915906 (-) True trnar-acg_18

Expression Profile