RNA id: XM_039809326.1


Basic Information

Item Value
RNA id XM_039809326.1
length 3599
RNA type mRNA
GC content 0.51
exon number 14
gene id si:dkeyp-19e1.3
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 26243946 ~ 26267018 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTCCTGATTCGAGATGAGCCTGGTTGGACCTTTCTCATTGGATTTTGACATGAAGAAGGATATAGATACATTGCTAGCAGAGGAACGTGCTGAAATCATCACTAAATATGATAAGGGCAGGCAGGAGGGCGTCAACATTGACCCATGGGAGGATGCCGACTACAGCATCTATAAGGTCACCGACCGCTTCGGCTTCCTGCATGAGGAAGAGCTACCAACACCCAGTGCGCTTGAAGAAAAGCAAAAGCAGCAAGACATAGAGCGAGTGGCGAAATGGCTGAAGATGGTGAAGGAGTGGAACAAGTACAGGAACAGTGAAAAGTTGGCGAAGCGTGTGTATAAAGGCATCCCTCTGCAGCTGAGAGGCCAGGCCTGGGCCTTGCTTTTGGACATAGAGAAAGTCAAACGCGATAACGAGGGAAAATATGAGAGAATGAAGCAGCAGGCTCGTAACTTCTCCACAGAGATCAAACAGATCGACTTAGACGTCAACAGAACCTTCAGGAACCACATCATGTTCATGGACCGCTTTGGAGTCAAGCAGCAGGCCCTGTTTCACGTCCTAGCAGCTTACTCTGTCTACAACACGGAGGTGAGCTACTGCCAGGGAATGAGTCAGATCGCTGCCATCTTGCTCATGTACCTGAATGAGGAAGACGCCTTCTGGGCTCTGTCCCAGCTCCTCACCAACGGCAAGCATGCCATGCACGGGTTCTTCATCCCAGGATTTCCCAAGCTGCACCGTTTCCAGGCCCATCATGATTTGGTCCTTTCCAAAATGCTGCCAAAGCTGAAGAAACACCTGGATAAGGAGCAGATGACAACAGGGATTTACACCACCAAATGGTTTCTGCAGTGCTTCATTGACAGAACCCCTTTCACCCTCACCCTGCGTTTATGGGACATCTACATAATGGAGGGAGAGAAGATGCTAACTGCCATGGCTTATACAACCCTCAAGTTACACAAGAAGCGCCTGCAGAAGCTTCCATTAGAGGAGCTGAGGGAGTTTCTCCAGGAGCAGATGGGTGTTTCTTTCTTCCTGCCTGATGATGTGGTGGTTGAACAGTTACACGCTTCTATGTCTGAACTTCGCAGTAAAAAGCTGGACCAACCTCCTCCAGccAAGTCAGAGGAGCTGCCAAAGAAACCTCTGGGTCAAGAGAGACCAGTTCTCCTTCTGCCTCTGCAGCCCGACTCTCCACTGGAGGTCAAAATAAATCTGCAGCCCCACAGCCAACCCAATACAGAGGCCCAGCAAACAGACAGCATCGCCCTACACCAAACTCCTTCTCCTGCAGAGCCCCAGGACTCGAGAACACCTCTTCTGCCTTCACCTGACCCAGTTGTAGTGCACACCCAAGGTACACCTTCTGCTTTAAGGCCTTGCAGAGCACCTCCGTTACCTCCAAAAGCAGACATACGCTGCGCTGAGGTCGAGTTGGACAGAGATGCGAAGGGGTCGCTTCCAGACGTTAGCCGGACCGAAGATGTGGGAAAACAGGAGAGCCAGACTGGAGACCCAGAGACCCGGGACGAGCCCGTGGCTTGGCCTCCGCCCTACGAGCCCCTTGATTCGGGAGCTCTTGCTGTGCAGACTGAGGAGGAATTCATGGACCTTCCGGATCTGCCGCCGCCACCTTTCTTTTACACTGAGCAGAATGACCAAGGGCCTCTGGACAGTCAGTCCCCCCACCTGGCCACTGGGACCGGCCCGGAGACTCGGCGGCGCTCTCCTTCCCCTCGCTCAGCCTCGCCACTGGTCACTCAAATGAAGCTATCTCCAAAACCATGCCCAAAACCACCCACGTCTCTTGACCTCGCACAGAAAAAACCTCCTCCCACAAAGCCTTCCCTTCCCAGAAAGCCTTCCACTCCCAGTGCCTGGaccacatcctcctcctcctccccctcctcctctcccagacTGCCTCCCCCAAAGCCAACCAAGTTCCCAGTCTCTCTCTACGTCCCGATGCACACGGGAGACAGACGGCCTTCCAACACCTCCCAGTACGACAACCTTTCCGAGGCCGACGACGACGACCGCTACCTGGAGAGGCTGCTGGGCTCCACGCCTGAGGAAAGTCCCAGCATGCATGGCAATCCCCCACATACCACGGACGGAGACTACGACCCCGCTCTCTTCCCTCTGCCTCCACCTCCTGCGTTCATCCCTCCGTCGCCTTCCCCTATTCCTCCCTCGCTGTGCGTTCTCCCCAGTTTGCCTCAGGAGCCAGAATATGAAGGAGAGGACAGCTGGGTGGAGGACTCCATCATCCCCCCTCCTCCAGCTAGTTTTGCTGACAGACTCAGTCCCAACACGGGTAGCGCTGCCAGctgttcagacacacacagagccacctCGCCCGGTTACTCTAAGCCTTTTTCTAGGGGCCCCAGGAACCATTCTGCTTTCCCAGCGCCACTGTTGTACACGGGGTCTCCCCCAGGACACTCCAGGCCCTCAGGACAGTCGGCAGTAGGGGTGCCCCTGGTCCGATCCAGCCCAGACTTTTGCAGGATGCCTGCAAGTGGACAGCAACTGCCCAAATCAGTGACCTTTTGAAGGTTTTAAGTATCGTTCAAGTGTTACCGATTATGCCAAGATGATTGGGACTCCCGGTAATACCTTGATTAGTTTTCAAAGCCATTTAAGAGGCGTAAGGCCAGTAGCTATTTagtgtgtcaaatgtttgtgtgtgtgtgtgaaaggacTTTTTTTCATTGATATGTACAGATTTATGTGATatttgcaccttttttttttccagttaacTTTTCAAAGTGTTGAACTTGTATTTAAAACTGCTGCCAATGTTACCGTTTGCCGCACAAAAAAATGAGTGCATCAACTCGCCTGCACCTAGTTAGCGTGCGATGCCAGATTTGGTCCTCAATTTCGAGGGTCGGTAAATAGAAATGTACACAGAAATAAGGTGATCTTATACCAGCCGAGTGTTCCACTGTCGCCTCGTCTCCAGTTAGTTTCATTTACAACCAAAGTGTCTTAACCTGATCGCAGTGCGCTGAGGCTAACAACTCTAACCCAAGGGCTTTCGAGGCTGCAGAGTAAGGTCATCTTCGCTAAAGCACCCAAAGCCTATACAGCACATTTCTACTGCACTTCTGGTCGACTGTGAGCATCTCAACAGTATGTCAAACTGTAACGAGTAACTGTTAATATGACACAGGTTTCTTTACTGTAACTTAAGGTCAATATTTGATAACAAAAGGACCACTAAACCAGGTTGCACCAAAGCAGTTTGAATGCAAACTTTTAAAAGAATTACTAAAGTTGTGACCACCAGCAACAGGAAAGACGTGGTGCGATATGTCACTGGTGTAAACACGGAAGCTAGTTTTATTCACATAAACCACAGTTAGGTCAtttctccctccccccctccccaggCAGGCTGCAGTGGGTACTCTGTGGGTactttgctgctttttgttttgttttaaattgactCGGTAGGATGATCAATCTCAAAGAAAATGGTTTCAGGTCAGTGTAATGctcatcagttcaattttctaagcacaaatggacatttggaaaaacagaaaaatgggttccattatccaattttt

Function

GO:      GO:0005097,GO:0032851

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118570 lncRNA downstream 326 26242641 ~ 26243620 (-) True G88030
TU118579 lncRNA downstream 9439 26234037 ~ 26234507 (-) True G88035
TU118573 lncRNA downstream 12626 26229603 ~ 26231320 (-) True G88032
TU118574 lncRNA downstream 12626 26229603 ~ 26231320 (-) False G88032
TU118553 lncRNA downstream 145135 26098557 ~ 26098811 (-) True G88016
TU118587 lncRNA upstream 17874 26280458 ~ 26285437 (-) True G88042
TU118599 lncRNA upstream 36990 26299574 ~ 26301108 (-) False G88054
TU118600 lncRNA upstream 36990 26299574 ~ 26302020 (-) True G88054
TU118622 lncRNA upstream 131740 26394324 ~ 26394952 (-) True G88067
TU118655 lncRNA upstream 216158 26478742 ~ 26564586 (-) True G88096
XM_039807654.1 mRNA downstream 17149 26209845 ~ 26226797 (-) True tmem86a
XM_039807651.1 mRNA downstream 53940 26032415 ~ 26190006 (-) True b4galnt4a
XM_039807652.1 mRNA downstream 54532 26032415 ~ 26189414 (-) False b4galnt4a
XM_039807650.1 mRNA downstream 63440 26032395 ~ 26180506 (-) False b4galnt4a
XM_039807653.1 mRNA downstream 129880 26032395 ~ 26114066 (-) False b4galnt4a
XM_039807572.1 mRNA upstream 40782 26303366 ~ 26327374 (-) True si:ch211-236l14.4
XM_039809058.1 mRNA upstream 232598 26495182 ~ 26503238 (-) True igf2b
XM_039807445.1 mRNA upstream 242516 26505100 ~ 26512528 (-) True th
XM_039808813.1 mRNA upstream 324566 26587150 ~ 26652111 (-) False osbpl5
XM_039808809.1 mRNA upstream 324566 26587150 ~ 26652111 (-) False osbpl5
TU118402 other downstream 647185 25596353 ~ 25596761 (-) True G87897
TU118279 other downstream 1178458 25064752 ~ 25065488 (-) True G87803
XR_005640032.1 other downstream 2327744 23909169 ~ 23916202 (-) False LOC120563922
TU118702 other upstream 411259 26673843 ~ 26674883 (-) False ptprjb.1
TU118864 other upstream 750653 27013237 ~ 27014411 (-) True G88249
TU118971 other upstream 961468 27224052 ~ 27228966 (-) False zgc:153031
TU119050 other upstream 1092388 27354972 ~ 27355776 (-) True G88379
TU120007 other upstream 4459524 30722108 ~ 30722503 (-) True G89085

Expression Profile