RNA id: XM_039809347.1


Basic Information

Item Value
RNA id XM_039809347.1
length 2959
RNA type mRNA
GC content 0.43
exon number 9
gene id tdg.2
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 10174471 ~ 10180001 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCAAAAGATCATGGGACTATGTTATTAATGGTTCCTGCCCTAGTTTAAGTGTTTAAGATGTTCTGTAAATGTTTTCGTTATGCATTTATGTTACCTGGGTTTTAGTCTTGATTTAGTGTTAATTTACATTTGTTGGGTTATCATGACTGAGACACTGGGGTAGGTTGATGACATCTGTGAACGTAAATACACTACCTTATACTACTACTAGCTACTAGAAGATGTATCTACCTGTGGCTCTTTGACTTCTTCCACGTAGCTCGTTACAGTGTTAATCGGCCGTTGGTTGTAAGGTTGTAAAAGTATAGTTGTGTAATGTGACTAAACGTCCTgaattttcattttagtttactCATGCAGTACACCTCCTAACCAAGGAGTGGCGGTAAGCCTTCACCCGACCTGCGCAAAAGCGTTTTGAGCGTTTAAATGGTCTTTGTTTTGGGAGGATTCCCAGCCCCCCGTCTCCTTATTTGAAAAACTAAAGAACAAAATGTATGACAGGTATGTTAGTTTGCTCATATACCCTTATGTTTTGTTAATGTAGAGGTCACTTGCGGTTTGAAGACAGCGGGGCTCGCTGTTAGCAAAGCCTTCCATCTTCCTGTAACGTTAGCAGCGTCCGTCTTCTTTGTGCCAGCAATGTACCGTATGTGCTATAATCTCCACATAGCTCACATCTCCAGTTTGAATTGATGCATTTGGCAGCAGAATGAATGTTAATTTATTCAAATAAGTCAACAGTTAAGATGGAAGAAAACCAGTATACATCATTGACGGTTCCTACGGATTATTTTCAGCAGTGGTACCAGTCCAGCCAGCAGCACCCCGAGGCTCAGTATGTGATGCCGTATCACAACACGGGCCATTACACAGAAGGTCCCAGAGATGAGCTTGTCATGGCCGAGCTGTCTGTCCACCGCGAACCACCTGTATACCAAGAACCTTTTTACCAGAACTATAACCCCCCGGCCCAAAATCACTACCAGGAGCTGACCTACCAGCCAAACGTcagggagcagcagcagcagcagcagcatcctgCACACCTGCACCCCCCTCAGCACCAACATACAATACAGCAGCAGGAGCCAAGTGTTCAGCACCAACCTCAGCCTGCTGGTCCACCTCAAGCTGTGACACcagtgaagaagaagagaggcCGGCCTCCTAAGCAGCAGGCGGAGGAGGGCAAgacacaggaggaggagaatgaGATTGAGGCGGCAAAAAAAGCCAAGAGGGCTCTCAACCGCTTCAACGGCATGTCAGTGGCTGAGGTTATGGCCAAAACCCTGCCAGACGTTATATCCTACAATCTTGACATTTTGATAATTGGAATTAACCCAGGACTATTGTCAGCCTTCAAAGGACGCCATTATCCAAACCCAGGAAACCATTTCTGGAAATGTCTGTTTCTTTCTGGTCTAACTGACGAGCAGCTCAACTACATGCATGACCAAAGCCTGCCGGAGAAATATAGCATCGGCTTTACCAACATGGTAGAGAGGACCACACCTGGTAGCAAGGACCTCTCTAGTAAGGAGATTCGTGAAGGAGGTCGACAGTTACTTGACAAGCTGCAGAAATACAAACCATTAATAGCAGCTTTTAATGGAAAAGGTATTTATGAAATATTCTGCAAAGAAACCTTTGGTGTGAAGGCAAAGAATCTCGACTTTGGTCTACAGCCTTACAAAATCCCAGAAACTGAAACGGTGTGCTACTTGATGCCGTCATCAAGCCCCCGCTGTGCCCAGTTTCCCCGTGCACAGGATAAGGTTCATTTCTACATCAAGCTGAAGGAACTGCGAGACCAGATGAAAGGCTTGGCACCAAGGCCCGAGGTGGAAGAGACACAGTACTTGTTCGATCTGCAGCTAGCTAAAGAGGATGCTAAGAGGATGGCAATCAAAGAAGAGCAGGTGGATCCAGAGTATGAAAGCTGTAGTGGGCTGCATGGGGATGTAAAGCAAAGCAGCAACTCCTCCAACTAAAAGAGACAGATGAGAGGAGAAGAAACAGGCCTGTCTGCTGTAGCACACAGGTAGTGTTGTTACCATGTAGTTCTAAATATATTTAGTTGGAACTAGATGGAATTGGACTTAGTTTCAGGTGCATATACCCTAACTGTAAATAACTCTGAACCACTGTGACTGATTACCAAAGCAATTCAAAGAAGTCTGTTGATTTTCATACAACCATGACATGAAGTGAACCAATGACCTCAACCATACTGGAAGTAAACATAGATTTGTCAGTCCGAAAAACATTTTAAGGCACGCACTACATTTTGGGTAACACTGCATGCAGAAAACACCACAGGGCACCTTTTTAAGTGAACATCATTTGCAGTAAGTGACAGAAAACACATTAAACGTTGCCAtggtccttttttttaaatatcttttgGGTGATttctagaaataaaataaattactgaACTATTCCAACATACTGGTTGATGACTTATAAATGCCTTCTGCAAGCAGCACAATCCATCTGTTTGGTTTGTATTGTGGTATCTTGCAGAAATGGACATTGTAGGCCATTCAGCGGACAACATGAAACGGAACCACTGCAGCTGGAGAGGTTCGCTCAACAGAAACCAGATATCAGCTGTACTAGTAGCATGATGCATCAATGAGGGTAAGAAACCCTCTGATGACACCACAAGAAAAGAGGAGTCATACAGTTTCCTGAGGCTTCGCAATGTGACGCACAAGGGAGAAAGTGCCCGTAACGGTTACATTTTCTAACTCTCAAACAAACTGTGCATGTTTTTGGTGttcttttttatcactatttatTGCATTTTGTAAGGTACGTGTCCAGTgacttatttttgtattttgaaagAATGACATTTTATGATTTATCAGCTGTATGAAAAGGGAATTGTACTCTGGAATTTCTAATCTGTAATTACAGAGTTATTAAATCTCTTCTAAAGCTGG

Function

GO: NA

KEGG:

id description
K20813 TDG; thymine-DNA glycosylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112642 lncRNA downstream 39726 10132747 ~ 10134745 (-) True G83669
TU112618 lncRNA downstream 104697 10067929 ~ 10069774 (-) False ppp1r15b
TU112613 lncRNA downstream 269556 9894777 ~ 9904915 (-) True LOC120563773
TU112573 lncRNA downstream 281716 9891384 ~ 9892755 (-) True G83613
TU112570 lncRNA downstream 285799 9888444 ~ 9888672 (-) True G83610
TU112679 lncRNA upstream 4237 10184236 ~ 10184640 (-) True G83699
TU112684 lncRNA upstream 9820 10189819 ~ 10191806 (-) True G83703
TU112737 lncRNA upstream 22732 10202731 ~ 10204403 (-) True G83744
TU112740 lncRNA upstream 35404 10215403 ~ 10277798 (-) False G83746
TU112741 lncRNA upstream 35404 10215403 ~ 10277798 (-) True G83746
XM_039809226.1 mRNA downstream 1129 10166324 ~ 10173342 (-) False tdg.1
XM_039809225.1 mRNA downstream 1129 10166324 ~ 10173342 (-) True tdg.1
XM_039810054.1 mRNA downstream 25365 10141783 ~ 10149106 (-) True si:dkey-10o6.2
XM_039808148.1 mRNA downstream 44514 10078071 ~ 10129957 (-) True pik3c2a
XM_039808900.1 mRNA downstream 97507 10072964 ~ 10076964 (-) True rps13
XM_039809836.1 mRNA upstream 206326 10386325 ~ 10397440 (-) False LOC120564668
XM_039809835.1 mRNA upstream 206326 10386325 ~ 10397440 (-) True LOC120564668
XM_039809905.1 mRNA upstream 269341 10449340 ~ 10467674 (-) False acanb
XM_039809904.1 mRNA upstream 269341 10449340 ~ 10467674 (-) True acanb
XM_039809210.1 mRNA upstream 366776 10546775 ~ 10632785 (-) False map1ab
TU112643 other downstream 85871 10086364 ~ 10088600 (-) False pik3c2a
XR_005640161.1 other downstream 101049 10073293 ~ 10073422 (-) True LOC120564824
XR_005640160.1 other downstream 664400 9509942 ~ 9510071 (-) True LOC120564823
XR_005640162.1 other downstream 1599040 8575254 ~ 8575431 (-) True LOC120564825
TU111877 other downstream 2883044 7287895 ~ 7291427 (-) True G83064
TU112851 other upstream 247563 10427562 ~ 10432144 (-) True G83826
XR_005640086.1 other upstream 464033 10644032 ~ 10662678 (-) False scamp2
TU113209 other upstream 1708028 11888027 ~ 11888398 (-) True G84083
TU113260 other upstream 1961524 12141523 ~ 12144546 (-) True G84123
TU113814 other upstream 3050618 13230617 ~ 13231095 (-) True G84530

Expression Profile