RNA id: XM_039809373.1


Basic Information

Item Value
RNA id XM_039809373.1
length 1754
RNA type mRNA
GC content 0.47
exon number 4
gene id szl
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 22234736 ~ 22236927 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcctggacctataaaaacaaacagagcAGATTCAGTGACTAGGCTTTAGTCGGTGAAAGCTGGGTTGTGATTGCCCATTGTCCCCCCTCCCTTctccccctcacacacaccctCCATCTGCTTATTACCCACCCTCTGTCTGCAGTCGTCACAAAAAAAGCTGTTGTCTCCAAACACATCGTCTCTGCGTCTTTGATAGGTAGTTGATAACAGACTTACAGACTGATGGGGCTGGCTGATCTTTCTGCGAATAtaaaaaaagcagcagcagcagctacaaAGCCATTCAAGGACAGAAGACACTTCTGACAACAAGCAACCTCAGTAAGAGCTCATCTATCTACCCTGTGGACTCTGGATTTTGTGAACCcttcagtatggctgtgttcttTACCGTGGCTCTCCTGGCTATGGCATGTCCTTTAATGGCATTTGACATGGGTCAGTCCACTCGTTGCGTCGCTATCCCCAACCAGATGAAAGTCTGCAAGGATGTTGGATACTCTGAGATGCGGCTGCCTAACTTCTTGGGTCACAGCAACCTGGAAGGTGAGGTGGTGCCACGCTCAGAGGACTGGAGGCCCATGCTGCAGACAGGCTGCCACCCTCAAGCCCAGGCCTTCCTCTGCTCCCTCATTGCCCCCGTCTGTCTTGACACTTTTATTCAGCCATGCCGTAGTCTGTGTGTGGCAGTGAGGGACAGCTGTGCTCCGGTGCTCGCCTGCCAGGGTCACCCATGGCCCGAGGAACTTGATTGCGACCGCTTTCCTACCGAGGAAGACATGTGCCTTACTCCTCACGCAAAATTTGGCCACATTGCAAAAGATTTACCCAAGCCTGCCTGCCAAAACTGTCCATCTGTGGATGTAGCTCCTGCCATGAAAACAGTCCTGGATGCTTTTTGCCAGCATGACTTTGCTGTGACTGCCAAACTTCACCGACGTCGCCTACCCATGGGAGAGCCAGAGTTTGATGTGGAGGGCCGTGTTGAGTTCATTCGCCAGGGACCTCTCCTTCCTTATGACACCCAACACCTACTCCAGCAATGGCTCCTCATCAACCTTCAGTGTGCCAATGCGCTTTTGCGCCCCGGACGGTCACAGCTTTATGTGCTGACTGGTTCCGTGCAGCGTGATGGCACCCTTGCTCTTACCCGTCTCTTCCCTTGgcacaaaaaagacacaaacattGCAGTGGCCACTCGCAAGTGGAAGCATTACAGATGTTGAATGGATTGATACTTAGATGTAAAAACTGGGGCTCTGAATCTGTGTTTGAAGTGTAGACTCACATATgaacaatttgtttttattttatttatttacttttttaccAGGAGTATTCCCATTGAGATTCCGAATCTCTTTCACAAGGGACTCCTGGTCAAGACAGCAGTATAAGAAAATTCagataaaacaaacaagcaacaGATGATTATTCGATTCCACACCTAAAACACATATGATTTAAGACCAAATCAAGGAGGACTTATGACATCCAGTGAGAATTTGTGAAGTAAGCTGAAGGGATATAAGAACAGAGCTGGACATCAACACCGTTGCCTCCCTCAGCAGGTCACATTCTCACCACTGCTCTGACAGCACACAGTAATAGAATGCACTCAAACCTGTACATAGTATTAATTAATGTAAATTGATTGTAGATTCTATTTTCTATAAGGATATTGGTGTATTTATGACATCTTTTTTATGTGTATGTTATGTGGAAAAAGATGACAATAAATGTTTGTTCTG

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117542 lncRNA downstream 128481 22105880 ~ 22106255 (-) True G87254
TU117537 lncRNA downstream 152198 22070958 ~ 22082538 (-) True G87249
TU117515 lncRNA downstream 226341 22005499 ~ 22008395 (-) True G87232
TU117411 lncRNA downstream 509078 21724923 ~ 21725658 (-) True G87148
TU117376 lncRNA downstream 684877 21546658 ~ 21549859 (-) True G87123
TU117622 lncRNA upstream 51017 22287944 ~ 22355196 (-) True G87320
TU117629 lncRNA upstream 113465 22350392 ~ 22366978 (-) False LOC120564428
TU117635 lncRNA upstream 151068 22387995 ~ 22390216 (-) True G87329
XR_005639987.1 lncRNA upstream 340090 22577017 ~ 22682276 (-) True LOC120563633
TU117745 lncRNA upstream 524258 22761185 ~ 22837866 (-) False G87400
XM_039809412.1 mRNA downstream 1137 22230931 ~ 22233599 (-) False LOC120564446
XM_039809411.1 mRNA downstream 1137 22230931 ~ 22233599 (-) True LOC120564446
XM_039809654.1 mRNA downstream 22896 22091533 ~ 22211840 (-) True nell2a
XM_039807634.1 mRNA downstream 205663 22013911 ~ 22029073 (-) True twf1a
XM_039807628.1 mRNA downstream 273669 21874973 ~ 21961067 (-) True LOC120563465
XM_039808211.1 mRNA upstream 3138 22240065 ~ 22265797 (-) True mov10l1
XM_039809372.1 mRNA upstream 110243 22347170 ~ 22366863 (-) True LOC120564428
XM_039807938.1 mRNA upstream 163822 22400749 ~ 22428938 (-) True tubgcp6
XM_039807941.1 mRNA upstream 194910 22431837 ~ 22554892 (-) True plxnb2b
XM_039807940.1 mRNA upstream 194910 22431837 ~ 22526196 (-) False plxnb2b
TU117418 other downstream 495408 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other downstream 495408 21735006 ~ 21739328 (-) False LOC120564778
TU117396 other downstream 521182 21713042 ~ 21713554 (-) True G87140
TU117029 other downstream 1355098 20877711 ~ 20879638 (-) False LOC120563850
XR_005640056.1 other downstream 1406133 20806882 ~ 20828603 (-) False LOC120564033
XR_005639990.1 other upstream 452234 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other upstream 454121 22691048 ~ 22706196 (-) False parvg
TU117944 other upstream 1257403 23494330 ~ 23498659 (-) True G87538
TU118073 other upstream 1502055 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 1668175 23905102 ~ 23905173 (-) True trnam-cau_7

Expression Profile