RNA id: XM_039809389.1


Basic Information

Item Value
RNA id XM_039809389.1
length 3446
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC120564432
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 21151500 ~ 21158504 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCTGTTGTTGTTAGCGGTGGGAAGGGCAGATTGTTGCAGCCGAGTTGATTTCACTGAGATCCACGTTGTGGATTAAATATTTCCAGTAAACACACTGTCCTGATAGCGTGTGTAGCTGCGGctgctgcaggtgtgtgtgtggatgggggGAAACAGCCCGAGTCACCTCTCTCGTGAGGATGGTGAAGGCGGAGGAGTTACTTTTGTGAAGGGCATTCGGCTGTCGGATAAAGTGATCCATCGGATGAAACAGTCTTCAAAGGTCGTCGTTCCTCCGCTCTCTCAGAATGGACGTCCTCCTCCACAAACACCTGAAACCCAAACACCCACTccagtcccccccccctctgtccAACACTTGATACCTCTTCTGACACCACCTCCATTAGTGGAACCTGTTCCTCCTGTAAAActcgtccctcctcctcctgtaaAGTTTCACTCCCTGCCTCCACCTGTAGAGCCCAAATCTCCACCTCTAACCGCCCCTGTAGGCTCAGACCCCgctccaccacctcctcctcctcaagaAGCCCCATCCACACCTCCATCATTGGAACCTCCTCCTGCTGTAAAGGTTCACTCCCTGCCTCATACTTCTGTGGAGCCTGAGGCCCTGCCAAAACCTCCACCTCTGACCGACACTGTTGTCTCAGCCCCTACacctccatctccacctcctaTGGAGCTTgaatctcctcctcctccacctgctGTAGTGGATCCAGTAGTTCTACCTCCTGTTGAATCCTTTATCCCACCCCATATAGAACCAGAATCCCTGTCAGAACACATCTTCAAACCTGTTGTCCTAGCTCCACCTGTAGAATCAGCTGTAGCTCCACCTGTAGCGTCACCTGAACCTTTAGCTTCACCTCTGCCGTCTGAAACACTTCCAACTACTATTGAGCCTGCTGCTGTAGCTCCCTCTGTTCAACCTCTTGAAGTGGTTGTCTTGTCTGTGCCACCAGTGGAAACCATTCAACCTCTGCCCACTGTTGATTTTACACCAGTTGAACCAATAACACCACCCTGTCCTGTAGTTTTACCTCCCCAAGTGGAGACAACTCTTGTTGAGCCTGCAGTCCCACCTGCTGCAGTTGAAAAAGAAGTGCCTCCAGTCGTGGCTCCAGCTGTCGATCCACCGCCTCCATGTGAACTGCTCCCACCTTCTCCAGAGCCAGTGGCAGCACCCTCTCCCCCTCCAGAGGCACCCTCTCCCCCTCCAGAGCCGGTGGCAGCACCCTCTCCCCCTCCAGAGCCCATGGCGGCACCCTCTCCCCCTCCAGAGGCACCCTCTCATACACCAGAGCCGGTAGTGTCACCCTCTCCCCTTGCAGAGCCGGTAGTGTCACCCTCTCCTCCACCAGAGCCGGTAGCGTCACCCTCTCCCCCTGCAGAGCCGGTAGTGTCACCCTCTCCTCCACCAGAGCCGGTAGCGTCACCCTCTCCCCCTCCAGAGCCGGTGGAGGCACCCTCTCCCCCTCCAGAGGCACCCTCTCCCCCTCCAGAGCCGGTAGCGTCACCCTCTCCCCCTCCAGAGCCGGTGGCGGCACCCTCTCCCCCTCCAGAGCTCACTTTTGAAGAGCCCTCGCCATCCTGTCACTGTGTGGAGCTGGCCATCAGACTCACTGATGCACCTATATGTGAACCTGTCGTCGTAGAGCCTCCTCCGGCACCACCTCTACCTGCTCCAACTCCCCCTGCTGAGGAGCCCGCCATAACCCTGTCTCTGTGCCCTGTTGTTGAGGACGAAGTGCCTGCTGTCACCTCAGCGTCACCACCTGCAGCAGCCCCGCCTGTTCCTCCTGAAGTGGTGGAGGAAGAGTTGAGGCAGAAGATCAAAGAGGAGATGCAGATGAGTCTGGAGGAGGAGATCAATCAGAAGAGGCAGGAGCTGCAGCAACAGCTAAAGGAGATGAGGGCTCAGGCTCAAGCAGAGGCCCAAGCAGCCGCTCAGGCTCAGGTGGAGGAGCAGGTGAAAAAGACACTTGAGGGGGAGAAGGCGGCGTACGTGGAGAACCTGACCGACTCCATCATGAAGGAGCGAATGAAGACTGACGACGAAAGGCTCATGGTGCAGCTTTATCGGATGGAGCTGAAGGCTCATCAgctggaggagagggagaaagagttgATGAAACGAGACACTCTCTACAAGGAACATATCGCAAAACTTGAAGCAAAGTGCACTGAGTTTTACAAAGTGACTGCTGAGAGCTTCCAGAAGGGCAAGGAAGAGACTCACAACCGCTTTGCGCGTTTCAATATCCAGCCGGTGTGTGGTGACTTGCAGAGTCAGATTTTAAAATGCTACAAGGAGAACACAGGAAAGACTCTGTCCTGCTCAAGTATCGCCTCGGCCTATATGCAGTGTGTGGACAACGCCAAGAAGAATAAATTGAGCACTAGAGGTTAATGTGGACCACTTGATGAGGATGACAACATCTTAAAGCTTTACTGCTGCAGCAAAGACAAGTTGATAGACAGAATTCAACAAAGAGACAAGTCACAGGAGAATCAACTCCAGCCTTTACATGTATCTGGAAGAAGTAGCACATGCTGTACCCAGGCCAGTAGTCTGGTCTCGTACTGGTGTATGTCATGTTTGCAACCTCTCTGGTACTTCAGATCTTTTTGAAACCAATTGTGCCACAATAACTGATGGAAAAATCAAGTTATtgtctttgtaaatgagatgaaacaaaacaaaggagCAGAAAGGTTAAACTTGTGAAACCAAGTAAGGTATTTGTATGAGATCTATATATACTGAAGGAGATCCTGGTAAATCATTATGTATGTGTGCCTTGAAGTTATGAAAGCTAAATATAAGATTGCAGATGCATGAAAGAACTGTTTAACAGAGTGTGAAGTAACAAAGACCTGTACATGTTTGAGgttattgtactgtatatacattatTTCTGGTGCATgcaaaaatttaattaaattaaaattaaaatttaatttaattaaaccTCAATAAATTTGTTGTGAAATCACATAATGGCTTTTATATTTTGCAGTTTAAGAAAATATTGATAGGTGGTTGCTGCCCTCTGGTAGTTGTAGATTAAGTCAAATTActtaatacttttttattttttgtattaatcGGTGGTTAAAAACACAACTTAACATCTTTGTTGCTGATTGCAAAAAAATGACATGTAGTGATAGTTCGGCAGTATAATGTATAATACCCATGACAAATAGTGATGCCACATGCTATAAATCATGACAAAGTCACTGAAAACCTCTACTTGCAGGAATACTTGTGGAATATTATAATGATGTTTTGGGACAGTCCTGCTTTGTAAATCCAATGTGATTTAGTACAGGGAGATACATTTATAATTTCCTGTTGGTATGAAACAGGTATGTATGTTCAATTGTTTTGTACAAACTGCAAAAATCAATATACTAAGACATTTgatagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639947.1 lncRNA downstream 4987 21140507 ~ 21146513 (-) True LOC120563411
TU117182 lncRNA downstream 48121 21102630 ~ 21103379 (-) True G86976
TU117040 lncRNA downstream 242910 20908389 ~ 20908590 (-) True G86853
TU116909 lncRNA downstream 451863 20698815 ~ 20699637 (-) True G86761
TU116815 lncRNA downstream 689677 20402744 ~ 20461823 (-) True G86686
TU117244 lncRNA upstream 86507 21245010 ~ 21251759 (-) True G87030
TU117338 lncRNA upstream 211060 21369563 ~ 21370658 (-) False dnajb9a
TU117350 lncRNA upstream 304202 21462705 ~ 21466246 (-) True G87107
TU117371 lncRNA upstream 328029 21486532 ~ 21512528 (-) True G87120
TU117376 lncRNA upstream 388155 21546658 ~ 21549859 (-) True G87123
XM_039809870.1 mRNA downstream 17281 21120429 ~ 21134219 (-) True LOC120564685
XM_039807859.1 mRNA downstream 53114 21087412 ~ 21098386 (-) False tasor2
XM_039807857.1 mRNA downstream 53125 21073066 ~ 21098375 (-) False tasor2
XM_039809891.1 mRNA upstream 1848 21160351 ~ 21165666 (-) True slc35b4
XM_039809806.1 mRNA upstream 17087 21175590 ~ 21183883 (-) False LOC120564647
XM_039809807.1 mRNA upstream 17087 21175590 ~ 21183883 (-) True LOC120564647
XM_039809808.1 mRNA upstream 17087 21175590 ~ 21182260 (-) False LOC120564647
XM_039809625.1 mRNA upstream 26963 21185466 ~ 21189607 (-) True tmpob
TU117029 other downstream 271862 20877711 ~ 20879638 (-) False LOC120563850
XR_005640056.1 other downstream 322897 20806882 ~ 20828603 (-) False LOC120564033
TU116763 other downstream 892241 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 1468583 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 1579578 19570302 ~ 19571922 (-) False cep152
TU117396 other upstream 554539 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 576503 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 576503 21735006 ~ 21739328 (-) False LOC120564778
XR_005639990.1 other upstream 1530658 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other upstream 1532545 22691048 ~ 22706196 (-) False parvg

Expression Profile