RNA id: XM_039809456.1


Basic Information

Item Value
RNA id XM_039809456.1
length 2033
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC120564460
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 23880291 ~ 23893596 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACGAACTTGCCTGGCAAGAACAAGAATGTTTGACGCTGCGCAGATAAACGGCCCCCGTAAAGACTTTCCTCCATCACGCCCTCAGAcataaatacagacagacagacagacagacagacacacacacagacagacagacagacaggatacCTGTGATTTTGACAACGCCGGGCGTTTCCAAACACTGCAAGGCTTGAAGAGGTCTGTGTCTCCGTGGATCGACACCGGCAGCAGATCCCCAGAGCCCAGCGCGAACAACCTTGGACCTGAAGGAGCACAAAGCAGGACAGTCAACATGAGCAGATGTCTGATTAGCAAGTCGGAGGTGGCAGGGTTCATTGAGAGGTGTATGACAGGCGTGGGCACAAAACCGCATCATGCCCGCAGCCTGGCCGAGGTACTGGTGGAGGGAGACCTCAGAGGACACTACAGCCATGGACTCAACAGGATGGACATGTATGTAAAGGACATCCAGACAGGAATCTGTGCCAAGGACGGTGAGCCAGTGGTGGAGAAGGAGAGTGCAGCCACAGCACTGGTGGATGGGAAAAACCTCCTGGGTCCTGTGGTGGGAAACTTCTGCATGAAACTGGCCATTAAGAAGGCAAAAGAAGCTGGCATTGGCTGGGTGGTGGCACACGGTTCCAACCACTACGGTATTGCAGGATACTACTCAATGCAAGCTCTGAAGGAAAACATGATTGGCATGTCATTTACCAACACGTCCCCACTGGTGGTTCCCACACGTGGTAAAGAGTGCACTTTGGGCACCAACCCCATCAGCGTGGCAGCTCCTGCTAAAGACGGAGACAGCTTTGTTCTGGATATGGCCACATCAGCAGTAGCACTTGGAAAGGTGGAGCTCTATGAACGGCGTGGAGACCCCATCCCTGAGGGCTGGGGCTGTGACGCCCAGGGCAAGCTGACCACCGACCCTAAGAGAGTTCTGAGCGGAGGAGGACTGGTGCCCATCGGCGGCAGTGAAGCCACAGGAGGGTACAAAGGCTACGGTCTGGGAATGATGGTGGAGGTGTTCTGTGGTATCTTGGCTGGTGCCCAGTACAGCAATCATGTCCGCACGTGGAAAGTAACAGACCGGGTTGCCAACCTGGGTCAGTGTTTTGTTGCAATCAACCCAGAGAACTTTGCTCCCGGGTTTGCCGACAGGATGTCAGACCTGCTGTCCATCCAGAGAGGGATGGACCCTGCTGACCCAAGCACCCCTGTTTTGGCTGCTGGAGATCCAGAGAGGATGAACATAAAGAAGTGTGAGGAGATGGGCGGGATCCCCTATCACATCAATGTTGTCAACTACATGAATGAATGTGCCAAGAGAGTTGGTGTCAGCCCACTGCTGCCATGTAACAATCTTGTTTCCAATTAGTTGGTGAAGTCAAGACTCTCAGCATTGGAAATCTGGAACTTCTGCTTATCTTGAAGTTCACATTGAGCTACTTAGGAATGCAACTTTGTTTAGGGATATTATACatactattttattcattttaccaCACTTGTCAGGTGTCATCGGGTTGTTTGATGATCATCCAAACAGATGACAGACTAGGACCTCTTCAGATTAATAATCTGATTTTATTATATGCAGCTTTTATTATACAGACACGGTACCGGGAATACATGCATAGAGACAGGACAACGCACACAAAGCATCTCAACAGAACATTGTGACATTGCCTCTATATATCTCCCTGCATCCGACATTATGAGTTCCATATGTTAAATGTCTTCATCATAATACCTGGTAAAAACAGTGTTGTTTAAAACGCCATCATAGCATCAGGCTCTGCTCAGAAGTCAACCAGAAAATATTTTTGCCTTATCTCTCATGCACATATAAACTCAACCAGATGTTACCTATAGCACCAACATGGACTGAGTTCCCTTACATAGACAGtatcagtggtggaaaaagtattcagatcctttacttaagtaaaagtactaatactgtaaaaatactctgttacaagtaaaagtcctgcattgcaaatattacttaagtaaaagtac

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118056 lncRNA downstream 142786 23680748 ~ 23737505 (-) True G87614
TU118029 lncRNA downstream 250006 23629726 ~ 23630285 (-) True G87596
TU117898 lncRNA downstream 462438 23415763 ~ 23417853 (-) False LOC120564579
TU117845 lncRNA downstream 641759 23231238 ~ 23238532 (-) True G87469
TU117844 lncRNA downstream 655650 23198588 ~ 23224641 (-) True LOC120563856
TU118160 lncRNA upstream 144288 24037884 ~ 24039901 (-) True G87695
TU118158 lncRNA upstream 148862 24042458 ~ 24043739 (-) True G87693
TU118202 lncRNA upstream 465397 24358993 ~ 24359284 (-) True G87733
TU118217 lncRNA upstream 690762 24584358 ~ 24584608 (-) True G87748
TU118224 lncRNA upstream 699765 24593361 ~ 24593577 (-) True G87755
XM_039809958.1 mRNA downstream 146636 23696033 ~ 23733655 (-) True ptdss2
XM_039809960.1 mRNA downstream 147994 23699160 ~ 23732297 (-) False ptdss2
XM_039809959.1 mRNA downstream 147994 23700406 ~ 23732297 (-) False ptdss2
XM_039809957.1 mRNA downstream 147996 23696033 ~ 23732295 (-) False ptdss2
XM_039809246.1 mRNA downstream 216488 23653545 ~ 23663803 (-) True LOC120564359
XM_039807594.1 mRNA upstream 6697 23900293 ~ 23904797 (-) True LOC120563437
XM_039808436.1 mRNA upstream 15573 23909169 ~ 23911818 (-) True LOC120563922
XM_039808433.1 mRNA upstream 33832 23927428 ~ 23937460 (-) False polg
XM_039808434.1 mRNA upstream 33832 23927428 ~ 23937399 (-) True polg
XM_039808435.1 mRNA upstream 33832 23927428 ~ 23936347 (-) False polg
TU118073 other downstream 139101 23738982 ~ 23741190 (-) True G87624
TU117944 other downstream 381632 23494330 ~ 23498659 (-) True G87538
XR_005639990.1 other downstream 1174095 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other downstream 1174095 22691048 ~ 22706196 (-) False parvg
TU117418 other downstream 2140963 21735006 ~ 21739328 (-) True LOC120564778
unassigned_transcript_379 other upstream 11506 23905102 ~ 23905173 (-) True trnam-cau_7
XR_005640032.1 other upstream 15573 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other upstream 15573 23909169 ~ 23916202 (-) False LOC120563922
unassigned_transcript_380 other upstream 22238 23915834 ~ 23915906 (-) True trnar-acg_18
TU118279 other upstream 1171156 25064752 ~ 25065488 (-) True G87803

Expression Profile