RNA id: XM_039809482.1


Basic Information

Item Value
RNA id XM_039809482.1
length 5423
RNA type mRNA
GC content 0.49
exon number 21
gene id frmd4a
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14110466 ~ 14198123 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTAACTTACGCATGCCATGTTCTCTGATTGCAGACGGTGTTTGAACGTCtgtggaagagagaaagaaagatggagcgagtGTTCTACATAGAGAGTATATCCTACCTGAAGGACAATGCCACTATTGAACTGTTTTTCCTTAATGCAAAGTCCATCATCTACAAGGAGCTTATTGAAGTGGACAGTGATGTTGTCTTCGAATTGGCTTCCTTTATTCTACAAGAGGCTAAAGGTGATTTCACCAGCAATGATGCAACCAGGTCTGACCTGAAAAAGCTGCCCGCTTTGCCCACCCAGGCCCTAAAGGAGCACCCATCTCTAGCCTACTGTGAAGACCGGGTCGTAGAGCATTACAAGAAGCTCAATGGCCAGTCCAGAGGGCAAGCTATTGTaaaTTATATGAGCATTGTAGAGTCTCTCCCCACATATGGAGTACATTACTATGGTGTTAAGGACAAGCAGGGGATCCCATGGTGGTTGGGTCTGAGCTATAAAGGCATCTTTCAGTACGACCACCAAGACAAAGTCAAACCCAGGAAGGTGTTCCAATGGCGTCAGTTGGAGAACCTCTACTTCAGAGAGAAGAAGTTTTCAGTGGAAGTTCATGACCCCAGGAGTAGGGCGTCGGTGACAAGAAGGACGTTTGGTCACAGTGGCATCGCTGTGCATACGTGGTACGCCTGTCCGGCCCTCATCAAGTCCATCTGGGCCATGGCTATCAGCCAACACCAGTTCTACCTGGACCGCAAGCAGAGCAAGTCTAAGATCCATGCTGCGCGGAGTTTGAGCGAGATCGCTATAGACCTTACGGAAACAGGAACTCTAAAGACCTCCAAACTTGCCAACATGGGAAGCAAGGGCAAAATTATAAGTGGCAGCAGTGGCAGTCTGCTCTCGTCAGGCTCTCAGGAATCGGACAGCTCCCAGACAGCTAAGAAGGACATGCTGGCAGCCTTGAGGGCCAGGCAAGAAGCTCTGGAGGAAACGCTAAAAAAGAGACTCGAGGAACTCAAGAGCATCTGCATCAGGGAGGCGGAGCTGACAGGAAAGCTTCCGAAGGAATATCCTCTGGATCCAGGAGAGGAGCCGCCCACAGTGAGGCGGAAGATCGGTACCGCCTTCAAACTGGACGAGCAGAAAATTCTTCCTAAGGGAGAGGAAGAGGAACTGGAGCGTTTGGAGCGGGAGTTTGCTATTCAGTCCCAGATTACAGAGGCAGCCAGGCGTCTTGCCAGTGATCCCCACGTGAGCAGTaagaagctgaagaaacagAGGAAGACTTCTTATCTGAACGCACTGAAGAAGCTCCAGGAAATTGAGAACTCTATCAATGAGTACCGGGTCCGCTCTGGCAAGAAGCCTACGCAGAGAGCGTCGCTTATCATAGAGGAGGCCAATATTGGTTCTGAAGACAGTTCATTGTCTGACGCACTGGTCTTGGATGATGATGATCCTCAAGTTACAGGTACTCCAACCTTCTCTCCAGTAGCATCGCCTCATAAGGGCCTCCCTCCTCGACCACCATCTCACAGTCGGCCCCCTCCACCACAGTCCCTGGATGGCCTGCGACACCTGCACTACTCACGCCCTGACTACGATAAATCACCAATCAAACCCAAAATGTGGAGTGAATCGTCACTGGATGAGCCCTATGAAAAAGTCAAGAAACGCTCCTCTCATTCCAGTCACAGGCGTTTCCCAAGCTCTGGCAGTGCAGAAGCAGGGGGTAGTAACTCTCTGCAGAGCAGCCCCATCAGGAGCCTCCCTCACTGGAACTCTCAGTCCAGCATGCCGTCAACCCCAGACCTGAGGACCAGGACCCCACACTATGTACATTCCACTAGGTCAGTGGACATCAGTCCCACACGTCTGCACAGCCTCGCTCAGCACTTTAGGAACCGCAGCTCAAGCCTTGAGTCTCAGGGCAAACTGTTGGCGCCCGACCCTgacgcacacccacacaccctgGGCACACTGGGCAGCCCTGACTTTTTCTTGGTCCCAGGACGCAACTCCAATGGCTCTGACCCACTGGACGACTGCTCATCCTGCACCAGCCAAAGCAGTTCAGAGCATTACTACCCCTCTGGGGGCCCTGGCAGCAACCCCAATTACTCTACTCTGGGGGAGGACTCACCCTCCAAAGCCAGGCAGAGGCAGAGGCAAAGGCACAGGTCGGCAGGTCACCTGGGTTCCTCTAACTCCGGTTCCATGCCAAACCTGGCAGCTAAGAACGGCTCTGGTGGAGGCTCGGGTGGAGGGGGGATGGGAGGGGGACACCACGGAGTCTACCTCCACAGCCAGAGCCAGCCCTCCTCCCAGTACCGCATCAAGGAGTACCCACTTTACGTGGAGGGCAGCCCCAACCCCGTGGTGGTGCGCAGCCTGGAGAGCGATCAGGAGGGCCACTACAGCGTCAAGGCCCAGTTCAAGACCTCCAGCTCCTACACGGCCGGGGGACTGTACAAGGAGGCCTGGGGGGGAGacgagggaggagaggggagcgGCCGACTCACGCCGTCGCGCTCTCAGATCGTACGGACACCGTCATTGGGGCGAGAGGGTGGTGGAAGCGGAGCAggggggagagcagcagtgtcTGAAGAGCTGCGGTGCTGGTACCAGAGGTCCTCAGGGAGCCTGAAGGAGAGGAGTCACTCACACTCGGGATCTACCTCCTCTGAGACAGGGTCACAGCAAGGCACTCTGGGACATGGTCGAGGGAGTAGAGTAGGGACGCTCGCCAAGGGCTCACCAGCTGCATCCCCTCACAGCCAGAGGAGTATGACGCCCTCCAGCGAACACGcagccacacccacacccacaccccccTGTAGCCCACAGCACATCCTCAACTGGCAGAGCGgGTCTTTCAGTGACAGCTGTTTTCTCAGCAGCCCCCTGTGTTCAGAGCTGGCAGATGTGCAGTGGTACGGACACGATAAGGCCAAACCTGGAACCCTGGTCTGAGACCTTCTTATAGGGCCCAGAAAAGTCCCATTGCCCTCTCCTACTGCCTCTGCCCTGCCCTGACCGGACTGGCGGACTGGACATGAGCCTCTATCCTCCCTAAATCCTGCCCTCCATCCATCCCACCACCTCTTTATTATGCCCCTCTATCACAGCTCAGCTGGACAGGGACACACTTGCTGCGCTCTGATAAGGGCCGATTTCACAGGACAGACTGAGAAAGTGCCACCTCAGCTGTTGAACTGTTGCCATACAGCCAGCACCACAGAGCCAGTTCTTTACTCACACCTCAGCACACAAGCAAAGGGGGAAAGGAGCGATGGGAAGACAGAGCACAGAAAAATATCAAACATACAACTCGAACTCAACAGAACCAACATCGGCCATTCCAGGATGTGTTTCATATCTTATCTTTGGTCCCCCGAGCTAAACTAACTCCAGTGCACTGCCACCCAATCAGAGGATACCTGCTGGATTTGAGCCACCAGTTTAAAACCCATCCCCAGGCCTAAATGAACTGTGTTGGATTTCATTATTGCTATTAAtggtgtttgtctttttttgtttatttgtcccAGCATATTTATAAGAAGAGAAGACTACACAgacttttcaaaaaaaatctGGATTAACAAACATTTAGATGACAAATTCAACTCCTCTCAGTTTAACCCACAACCAAAGACAATTTACTGGATTACCTGGTCACACTGGGCTGGGGTCCCTGCAGAAAAGTGACTGTCAGCCAACTGTATGTGAGTGCATTCACAGTGACAATATCAGGATGGTTTATGGGACTCTATCTGGGATATCGATGAGGACTATAGCAATAACAAACATTGTTCAAGTATATGAACTGGTTTAAATCAACGGAGTGAATTGAAGCAGGCATTTTGCTGTGTTCTCTGCCTTGTGATGCTTGGAGTAAAAGATCATAAGTGCATCATGGGGAGAATTTGCAGTTGCGGTTATTGGGTTTGGCATTAATCTATGCTTATTTTAAGTGACTTCATCAATCATGATAATTTAATGTCTTTGGTCTTTTCAAGATTTCTACGTCCACATGTTTAGTCCACAATTACTGCAACATTTGATCCTGATTCTgccttttcacatttttcattttcacccCTGAAAGTAAAAGATTTCTAGCTGTTGACATCTGTTATTTGTGTTTGAtattgagttgttttttttcagtgataCATCTCTGTAGTGAATCATCTTTTCTATCACAAGTGTCTCTTCTTCTCCGCTGGTCTTGGCTCTATACCGGATCTCACCACACTGAGTATCTGTCGGTCCCGTTTTAGTGGCATTGTGCTTTCTCATCTTTCTGACCATCTCTTCAGCGTGACAGGAGCATCCTGACGGTGCACAGACAGTCTGAACTCAACGTCGGCTAGAGCGCACACACTGACAGTCACAACACCTCATATTATAGGCATGCAAGGTTATAGTTTATCAGTGCCAAACATGTTGGTGCTTTACATTTGTACTGTAATTCAGCACTGGAACAGACACTCATTCAGGCTACAAACTGTTAATCCCCACAGTCTATAACAGACTTCTCAAAGATTTGGCACCAAGTATACAGTAGTAGGAATTCTTCAAATGTACTTTGAAAAGCACAACATTAACAGTGTCTATGAGGGCTGGACCTACAATAAGTGTGTTCTCATTTTCCACTCTCAATATTTTAACAATGAGTTATATATCAAAGTGCATAAGAGGAAACTAGAAAATCCAGAACCACGGACAAGGTGTCACATGATAGTACTCTTTGAAGCCATAGCcacaactaaaacaaacaaTTCTTTAACCCTCTCAAATTGGTGAGAATTATTATCTTACACATCCCAATCAATAATCAGATATTCAGAATAGGGTTAGAAAAGCACACCTGGTTTTGTAAGGAAGTCGAACTCTGCACGTTTTAGCTGTATTTCGATCAATTTCCCTCATCTTCTCCGAACCAGAGTTTATGTTAAGaatcatttttttcattgttgCACAAAATCTGAATTAATcagatgttcattttactaAGATTATGACAGATTCTAGATCTTAGTGATAGAGAAGTggatgtgtttttgttgttgttcttatAGCACCATTATGTCTGGATAAATGGTGTATCATGTTGTATGGCATGGGAGGAATGGTACGCATCTCACCCTGTCCCTCATAGTGTTGTGTTTCCTTTATGCACTGACACAAGTTGTTGTAATCTGCCACTTTCTAGACTATTGAAATAAGAAGGTTCAACCCACTCCCTGCATGGTTGGTTCTCCAAGAGTTATCCACCCATGCCTGGTCACATTTGATCGGTCTTTCCCCAGGATTGGAACCAGCACTACCCGGTTACCATCATAGGAATGAATGACTCTAGCGTGCTAAAGACACGATCCCATGCATGCCCTGCAGatccgctgaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114089 lncRNA downstream 37518 14072633 ~ 14072948 (-) True G84719
TU113923 lncRNA downstream 424997 13683824 ~ 13685469 (-) True G84597
TU113916 lncRNA downstream 465618 13644417 ~ 13644848 (-) True G84592
TU113907 lncRNA downstream 665854 13434739 ~ 13444612 (-) True G84585
TU113867 lncRNA downstream 725261 13325986 ~ 13385205 (-) False LOC120564547
XR_005640108.1 lncRNA upstream 83633 14223197 ~ 14232530 (-) False LOC120564470
TU114136 lncRNA upstream 83686 14223250 ~ 14236952 (-) True LOC120564470
TU114142 lncRNA upstream 83686 14223250 ~ 14236952 (-) False LOC120564470
TU114147 lncRNA upstream 98018 14237582 ~ 14238451 (-) True G84751
TU114148 lncRNA upstream 100957 14240521 ~ 14241054 (-) True G84752
XM_039809703.1 mRNA downstream 19873 14079176 ~ 14090593 (-) False terb1
XM_039809704.1 mRNA downstream 19873 14080277 ~ 14090593 (-) True terb1
XM_039809705.1 mRNA downstream 19873 14080669 ~ 14090593 (-) False terb1
XM_039808308.1 mRNA downstream 47723 14053952 ~ 14062743 (-) True neto2b
XM_039809826.1 mRNA upstream 105656 14245220 ~ 14251969 (-) False LOC120564658
XM_039809825.1 mRNA upstream 105656 14245220 ~ 14251968 (-) True LOC120564658
XM_039809531.1 mRNA upstream 134065 14273629 ~ 14274893 (-) True LOC120564497
XM_039809530.1 mRNA upstream 134741 14274305 ~ 14276077 (-) False LOC120564497
XM_039809493.1 mRNA upstream 323795 14463359 ~ 14480786 (-) False LOC120564472
TU114030 other downstream 77251 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 492570 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 879371 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 1965920 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 2222068 11888027 ~ 11888398 (-) True G84083
TU114145 other upstream 83686 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 362396 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 826891 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 926475 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 1339418 15478982 ~ 15483926 (-) True ttc23

Expression Profile