RNA id: XM_039809491.1


Basic Information

Item Value
RNA id XM_039809491.1
length 2742
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC120564471
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 20088128 ~ 20115384 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctctgacTCCCAGCATCAATGGCAGCCCGGTGATGCTGTCATAAACTGTTTAACGATCGCGAAGGGGGCCGTCGTATTGTGAATGGTTATTATGATTGGCTGCATTCATTTGTAAGTAGGCTAGGCCTATACTGTGCAGTTGTATGCGACCCCGCTCGAGAGATAGAATAGGCTACAACCTGCTTGTTATAGGCTGTTGCTATTTTTATTTGGGTGTAGCCGCGGTCGGCTTGAATGATACATTTCTCTTTTTACTCGGAGGTTTTCCAAGGGCATCAGTGAGAGACACAGTGCAGCAGCGATCTGCATGTCTGACGGCTAGACGGAGCAAGAGGGAAGGACACTGTTTCTGCTGCTGTAGTCGATGAGCTTTCACAGTTATCGGTTATACCCAGGGTACAAGCACTCTGCTTTAGCTGCTCACTCGGTTCACCGCCTGGCTTTAGGATGCGACGTCATGAGTTGATCGCGCCTGACAGATGTTGCTGTGTTGCAGTTGCACAGGCATAGATTCTCCGCTTGCTCTCGCTGTTTTGGGGAGGATTCTGTAAAACGGTTCATGCGATAAATGCTAAGTCCTCGCTTCGTGCTCGGACAGATCGCAACATTCATAGTCTTCGGGATTGCATAAAATGATACCTGGATCTGCCGCATCAATGCTACCATCTGCAGAAGCTGCGAAATTGTACCAGACCAATTACGTCCGCAACTCCCGTGTCATCGGACTTTTATGGGCCATCTTCACTATCCTGTTCGGTATTGTTAACGTGACCATCTTCTCACAGCCCTATTGGATTGGGGATGGTGTGGATACACCGCAGGCCGGTTACTTCGGCCTTTTTCACTATTGCGTCGGAGATGGAATCTCCAGAGACATGGCCTGCCAGGGTAGCTTCACCGAGTTCGCCGAAATCCCCTCCACTGCGTTCAAGGCCGCCTCCTTCTTGATTGGAATGTCCATGATGTTGGTTGTCACCTGCATCGGCTGCTTCagtctcttcttcctcctcagcacctcCACCGTGTACAAGATCTGCGGCTGGATGCAAGCAGCATCAGGTGTCTGTCTGGTGTTGGGTTGTATGATTTATCCTGATGGTTGGGACAGTGACGAAGTTCGGAGGATGTGCggagagcagacagacaaataCAGCCTGGGGGCCTGCTCAGTGCGTTGGGCCTACATCTTGGCTATTATGGGCATCCTGGATGCTCTTATCCTCTCCTTCCTGGCTTTCGTCCTGGGGAACCGACAGGATGGACTCATGACAGAAGAGCTGCTGGCTGAGAGCAAGGaGGGAGGCAATGCCTAACCAAATCTTAAGGTTCCTGAATTTCCATGTGTCTGTTTTCATGAAGTACCAGTCAATCCTCAACATCAGCTTAGAGGAAGGAGGCCATCCACGTCTGTGACGGAGAGGAATACTATGGAACCAGCCAGCCTGCCTATCACATCTACCTGCCAAAATCCCAGTGTAACCTACCCTCAAAGTCCATCCCTTTTGCTTGCAGTAACTAAATCATCCCCAGCACTTAGATGGAGCCCAATGCACTTTTACCCTAATGTGTCTACAGACCTAACCCTTGCACAGCATTGCATAGACCATGGCAGGGGCAGAGACTGTTATTCTGTTGAGAAGTATATGGACTACCCACTACCTACCTGAGAAGGCACAGGGTTGACATTGTACACATGCAGTActagcacacaaacacacacacaaacacatacacacacacacgccaactcaatcatatgcacaaacacaacTCAACGCACATACATTACATTCAAACAAAACATTGACAAACTGTAATTACAAGTATTAAACTATGTTAACACTTAGCCGTGTGTACCACCGTCAGAATGTGTGTCATgttttatttgtgaaaaaaacagctCATTTTAAGATAATATCGGGTTGATGTAAATCTATTGTGTTTCATATGTGAAGTTTGACAattaaatgaaagttttttgttttttttgctcataCACCCCTTTGTTCCTCTTCGTTTACtagaaaaaaagatatttaagaTATTTTATATGAATATTATCATCCAAAAGAGAAGAGAACTTGTATTAAAAAGTATGTACAGTGAATATTAAAGATGTTCTAGGAATTTTAACTAAATCCATTCAATGCCCTGCTAGCTAACTTTGCACAGCGCTTCAGTTTGAGAAGAAATCTAATATTTTATAGTCTGTGGTATCTACACTGTGATGGGGGCTATTAGGATGTGTGCTGCAGGATTTGTAGCTGCTGTGTGAGTGTGCTTCTGTATGTGTGAAGGGaggtctgtgggtgtgtgtgtgtgagtgagtgagcgcATGCACATAATGTGAGTGTTGGTGTGAATGTGTTGTGTGCAATAGTTGGACTAAAGAACCAATATGCCAACCTCACACACAAATGTCCTGTTGTGTAGCccaatctgtctgtctctgtctttgtctccagCTCTCGCTTTCTGTTTTACTCTCTTTGACTCCCTTTTCTCGATTTGTTTTGTTGGGGCATACAGGGTAACATGATGGAGTTGGACAGTATTATGTATTGTGACTGATGATGGATCAGTAAGGTCTGTCCCAGCATCACCTGTGGATATGTTCCTGTGTAAATAGATATTCTATAGATACCAAACAATTAGCAAATATGGAGGAGGTTAACTTAGAGCAATTAAAGACATTCATTTAAGAATATATGAACACTTAATAAAGGTTTTCACTGTAAAA

Function

GO: NA

KEGG:

id description
K23893 LHFPL; LHFPL tetraspan subfamily member protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116708 lncRNA downstream 72316 20014338 ~ 20015812 (-) True G86605
TU116662 lncRNA downstream 264755 19821540 ~ 19823373 (-) True G86575
TU116652 lncRNA downstream 311085 19774307 ~ 19777043 (-) True G86566
TU116631 lncRNA downstream 362935 19723973 ~ 19725193 (-) True G86549
TU116624 lncRNA downstream 392313 19694995 ~ 19695815 (-) True G86543
TU116779 lncRNA upstream 126049 20241433 ~ 20241850 (-) True G86652
TU116787 lncRNA upstream 135506 20250890 ~ 20252526 (-) True G86660
TU116788 lncRNA upstream 135506 20250890 ~ 20264206 (-) False G86660
TU116815 lncRNA upstream 287360 20402744 ~ 20461823 (-) True G86686
TU116909 lncRNA upstream 583431 20698815 ~ 20699637 (-) True G86761
XM_039809628.1 mRNA downstream 4528 20075491 ~ 20083600 (-) False si:dkey-29p10.4
XM_039809626.1 mRNA downstream 4528 20075491 ~ 20083600 (-) True si:dkey-29p10.4
XM_039809181.1 mRNA downstream 29005 20016743 ~ 20059123 (-) False LOC120564329
XM_039809180.1 mRNA downstream 29006 20016169 ~ 20059122 (-) True LOC120564329
XM_039808992.1 mRNA downstream 75818 19987783 ~ 20012310 (-) True cd82b
XM_039807727.1 mRNA upstream 137415 20252799 ~ 20255338 (-) False bncr
XM_039807728.1 mRNA upstream 137415 20252799 ~ 20255216 (-) True bncr
XM_039807725.1 mRNA upstream 139982 20255366 ~ 20256420 (-) True LOC120563520
XM_039807729.1 mRNA upstream 141060 20256444 ~ 20257777 (-) True LOC120563522
XM_039807730.1 mRNA upstream 141060 20256444 ~ 20257547 (-) False LOC120563522
unassigned_transcript_376 other downstream 405211 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 516206 19570302 ~ 19571922 (-) False cep152
TU116428 other downstream 699553 19387822 ~ 19388575 (-) True G86402
TU116306 other downstream 770718 19315435 ~ 19317410 (-) False arpp19b
TU116124 other downstream 1077212 19007196 ~ 19010916 (-) True G86194
TU116763 other upstream 137255 20252639 ~ 20259259 (-) True G86638
XR_005640056.1 other upstream 691498 20806882 ~ 20828603 (-) False LOC120564033
TU117029 other upstream 762327 20877711 ~ 20879638 (-) False LOC120563850
TU117396 other upstream 1597658 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 1619622 21735006 ~ 21739328 (-) True LOC120564778

Expression Profile