RNA id: XM_039809530.1



Basic Information


Item Value
RNA id XM_039809530.1
length 620
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC120564497
representative False

Chromosome Information


Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14273629 ~ 14276077 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TAAGAGATGAGTCAACAGCCCTCCACTATAAGATGTCCTGATGGAGCCCAACTGtggcatacacacagacatccagCTAAGGAATACCAGTGCTATTCTGAGTTTGGTAAACCCAGAGAAATACTACAATTATGGAATACACTTTGGCCCTGCTGTTTTCTCTGCTGCACGTTTTGAGTGTGGGTACAGCTGCTCCTCTGCCAGCGGAAGTAGTGAAGATGAGATCAAAAGTGAAATGGATGGCCGAGCAGCTGGTGGTTAGGCTGAATAAAGATTTCCAGGTCCCTACTGGTCTGACACTGCGTCAACCTTCTGATGATCTGGATGGACTTTCCTCAATAGTGACAGTCTTGGAGGGTTACAACAGCCTGATCTCTGACACCAACGACTGGATCCCTCAGGTCAAGTCTGATATCTCTTCACTTACGGGTTACCTCGATGAGTGGAGGCAAGGGCACTGCAGCGAGCTGCGGCCGAAGCCTTCGGTGCCGGGGCCGCTCCAAGAGCTACAGAGTCAAAAGTTAAAGTATATTCACACCGTGAGCATCGAGGCTCTCATGAGAGTGAAGGAGTTTCTCCATATGCTATTGAAAAATCTGGATCATCTTGAGACTTGCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114161 lncRNA downstream 9319 14264725 ~ 14264986 (-) True G84762
TU114159 lncRNA downstream 10564 14263416 ~ 14263741 (-) True G84761
TU114158 lncRNA downstream 11190 14262703 ~ 14263115 (-) True G84760
TU114148 lncRNA downstream 33251 14240521 ~ 14241054 (-) True G84752
TU114147 lncRNA downstream 35854 14237582 ~ 14238451 (-) True G84751
XR_005640087.1 lncRNA upstream 7819 14283896 ~ 14284962 (-) True LOC120564348
TU114175 lncRNA upstream 89115 14365192 ~ 14365398 (-) True G84776
TU114412 lncRNA upstream 282381 14558458 ~ 14567269 (-) True G84960
XR_005640144.1 lncRNA upstream 531334 14807411 ~ 14808068 (-) True LOC120564774
TU114433 lncRNA upstream 575643 14851720 ~ 14852023 (-) True G84971
XM_039809826.1 mRNA downstream 22336 14245220 ~ 14251969 (-) False LOC120564658
XM_039809825.1 mRNA downstream 22337 14245220 ~ 14251968 (-) True LOC120564658
XM_039809480.1 mRNA downstream 124525 14110466 ~ 14149780 (-) False frmd4a
XM_039809493.1 mRNA upstream 187282 14463359 ~ 14480786 (-) False LOC120564472
XM_039809492.1 mRNA upstream 187282 14463359 ~ 14480786 (-) True LOC120564472
XM_039808182.1 mRNA upstream 225819 14501896 ~ 14558228 (-) True LOC120563775
XM_039807761.1 mRNA upstream 296654 14572731 ~ 14617358 (-) False LOC120563540
XM_039807760.1 mRNA upstream 296654 14572731 ~ 14617358 (-) False LOC120563540
TU114145 other downstream 37353 14223250 ~ 14236952 (-) False LOC120564470
TU114030 other downstream 241090 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 656409 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 1043210 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 2129759 12141523 ~ 12144546 (-) True G84123
TU114408 other upstream 225883 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 690378 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 789962 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 1202905 15478982 ~ 15483926 (-) True ttc23
TU114652 other upstream 1238701 15514778 ~ 15544082 (-) True G85133

Expression Profile