RNA id: XM_039809588.1


Basic Information

Item Value
RNA id XM_039809588.1
length 4864
RNA type mRNA
GC content 0.53
exon number 29
gene id eea1
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 12689693 ~ 12712352 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGCTCCGTGACCCGCCCATTCGCCGCTGCTGCCTGATCTCAGTCAGGTGTTCGTTTTACAGCGACGTAAACTTTGCATTAGGAAAACTGATTGGATTTTGAGTCGGGACAAACAAAGTCGAGGCCATGTTCAGACGTATACTTCAAATGACTCCTGGGAAGGGAGGGTCCCAGAACGCAGAGCCGGAGCAGCCCAGCACAGACCTTAACCACGATCAGACGTCTGAGGGCTTCATCTGTCCTCAGTGCATGAAGTCACACAACTCTGCAGAGGAGCTGTTCAAGCACTATCAGCTGTTCCACGACACCGGAGACCTGCCCACTCATATGGCACCCACTCGGGAAGACCTTACAATGCTGCGGCAAGAGGTTCAGGACCTGCATACTTCTCTCAAGGAGGAAAAGTGGTTCTCTGAGGAGCTCAAGAAGGAGTTAGACAAAGTCCAAGGACAACTGAAGCAAAATGATGGACAGACGGGCTCAGAGGATGCAGCCCTTGAAAGGAAGTTGAACGAAGCGGAGACCGAGAAGTTCAACATCAAGCAGATGAAAGACCTGTTTGAGCAGAAGGCTGCCCAGCTGGCCACAGAGATAGTAGACTTAAAGTCCCGCTATGATGAGGAGAAGAGCCTAAGGGAGGCTGCTGACCAGAGGCTGGGCAAACTGACCGAACAGCTAcagaaagagaagcaggagaaCGAGAGACTCCAAACAGAACTGCTGCAGCGACCGGGAGTGGAGGATGTGGAGGTACTGCAGAAGGAGCTGGTGCAGGTCCAGACACTGATGGACAGTCTGACCCGTGACAGGGAGGAAGAGTCTGAACGCCTCAAAACCCACTACGAGCAGCTGCAGGCTAACTACACTACCTCAGAGATGACCATATACCAACTAAAAGCAGAGCTGGAGAAGGGTCCACAGGAAGCAGCTGTCTACACACAACAGATCCACCAGCTGCAGAGCAGTCTGAATAACTTGCAGCAGGAAAGCCAGAGCCTGTCTGAGAAGCTTGCACGTAAGGAGAAAGAGTATCAGAAACTGGAAGAGTGTCTGGAAGCTGAGAAGGCTGCCAAGAAGGGAGTTCAAGGCagcctgagagagagggagctggAGGTTCAAGAGCTCCAGGCTCGGGCCACAGGGGCAGAAGCCTCCGTGCAGAAGGCCCAGACGGAGCTCGGAGAGAGGGCTGAGGAGGTGGCAAAGTTGAAGAGTGAGATCACGGAGCTGGAAGTGAAGCACGCAGAGCTGAAGGTTGAGAGGAAACAGTTGGAACAGCAAAGGGAAGAAAAAGACAGCCAAGGTgctcagcagcagactgagatCAGTCAGCTGCACGCCAAACTGCTGGAGACGGAGAGGCAGCTGGGCGAAGTGCAGGGTCGTCTTAAAGAACAGAGGCAGCTGTCTGGGGAGAAACTAAAAGACCGCGAGCAGCAAGCAGCCGACCTGCAGCTCAAACTGTCCCGTGCAGAGGAACAGTTGAAGGAGAGTGCCAGTAAGAATACAGACCTGCAGCACCAGCTGGAGAAAGCCAAGCAGCAGCACCAGGAGCTGCAGGCGCTGCAGCAAAACACTAACGGCAAACTCCGCGAGGCACAGAATGACCTGGAGCAGGTGCTGCGTCAGATCGGAGATAAGGACCAAAAGATCCAGAATCTGGAGGCTCTGCTGCAGAAGAGTAAGGACATTGTGAGCCAGCTGGAAGCCGAGAGAGATGACCTGTGTGCCAAGATCCAGGCCGGTGAGGGAGAGACGGCTGTGCTCAACCAGCTAAAAGAGAAAAACCTTGCACTACAGGAACAGGTCACGCAGTTGACGGACAAGCTGAAGAACCAGTCGGAGAGCAACAAGCAAGCCCAGGATAACCTACACGAGCAGGTCCAGGAGCAGAAGACCCTGCTGCGTTCAGCCCAGGACCGAGCCCACACCCTGGAGACCTCCGTCACTGAACTCAGCGCCCAGCTCGCAGACAGCAAGGAGAAAGTAGCCCAGCTGGATGCTCAGCTGAAGGCAAAGACAGAGATGCTGCTATCTGCAGAGGCAGCCAAGGCTGCGCAGAAGGCAAACCTGGAAAACAACCTGGAGACTGCTCAACATGCACTGCAGGACAAGCAGCAGGAGCTGAATAAAGTTCAGAAGAAGGTGGAGGAACAGGCCCAGAGGCTCAAGGAGAGACAGGAGCAGTGCACACAGATGGACGCCAGTCTGAAGGAATGCAAAGACAAACTATTGGCCTCAGAACAGCGTATAGAGAAGCTGGAGGGGATCAATAAGAAATTGGAGTCACAGGTTAGGGAGTTGCAGGCCACACGGGACCAAGTGCAGCAAGAAATGCAGAAGCTGCAAAAggaggggtcagaggtcaaacgGAAAGCCAAGGAGCTACAGCGCTCGCTGGAAACTGAGAAAGCAGGGGCCACTACACTACAAGAGGAATTGAAGAAAAAAGCGGCTGCTTTGAGTGACGTTCAGCAGCAGCTGGAGCGCAGTGAGGAGGACAAAGCTGCTCTGAAGTTGGATCTGGACAAGGTGAGCCAGGAGGGAAAGGCGAAGCATGCAGAGCTGGACAGGAAAGCTCAGAGCCTGACAGTAGACTTACAAAAGGCCCAACAAGAGAAAGAGGCTCAAAGGAAGGAGCTTACCTCTACGCAGGAGAGTCTAGGAAAGGCTAATAAGGCACTAAAAGAGAGTCAGAGTCAACTGGACACAGAGAGGAAGAACCATAAGTCAGCAATGGAGGAGAAGGAAAAGTCCAATGAGAAGGCCAGACAGGAGCTTCTTAAGAACAACGAGGCCATCACCAAGGCAATGAAAGAATCTAAAGATCAGTTGGAGCAGATGGGAGAGGCAGAGAAAAAGTTGAAGGTGCAGCTGACCACGTTGGAGCAGCAGCACTTAAAGGCTCAGGGGGCGCtgaaggaaaaagagaaagagttgGAGAAGTTGCAGGCACAACTTAAGATGTCCCAGGGCTCCTTTGAGGAGGAAACGAAGAAACTGGAGGGCCAAGTGGCAAAGTTACAAGAAGTTAATGTCAAGAAGACGGAAGAGGAGAGTAAGCTGAGGGCTCAGGTGTCAGATCTCGGCAAAGAGCTGGCCTCTGAGAACAGTCGGACGACAGAACTGCAGAAGGCCTTGGAGCAAAGGCAGGAAAGCCTCACTAAGCTTCAGTCTGACTTCTACGGCAAGGAGTCTGAGGTCTCTGCCATGCGTCAAGATCTGAAGGCGTCCGAGGAGAAGCTGAACTTGGCTCAGGAAGAGCTGGCCGCTAACCGCAACCATCAGACAGGTTTAGAGGCTCAGATCCAGGAGCTGCAGACGGGCCGGGGCTCGTTGGAGCAAGAGCTGGCAAAACGGGACCAGAAGCTCCAACAGCAAGAACAAACCCTGAGGGAACTACAGAAGCAACAGGGTCAAGTAAAGGAAGAactggagaaggagaggagtaAAGTGGAGGAGCTGAACAAAGCCAAGAGTGTCCTGGAAAAGAATAACACCAGGCTGACTTCTGAATTAAAAACAGTAACGGAGAAGAGTGAGAAGGAGCTGGGTGAGTTGCTGGAAGCCAAGCAGCTGTTGATCCAGCAGAAAGTGGAGCTGCAGGGTCAGGTGGAGGCAGCACAGAAGAGCCTGGAGCAGGAGCAGAAAGAGCACCAGGCCACCAGGGACAGCAGGAGCCAGCAAGAGGAGCAGCTCCGCGCACAAACCAAGATTGTCCAGGATCAGTTGTCGTCCGAGAAGCGAGCGAGAGAAGAGCAGGTGAAGCGTGGGGAGGAGGCAGAAGCTAAGATGGGTGTGCAGGTGACGGCTCTGAACGAAAACGTGGCCACGCTGAAGAGGGAGTGGCAGGGCAGCCAACGGAGAGTAGGCGAACTGGAGAAGCAGATCGATGAGCTGAGAGGAGAGATCGCTGTGCTGGAGGCCACCGTCCAGAACAACCAGGACGAGAGACGGGCTCTTTTGGAGAGGTGTGTGAAGGGTGAAGGTGAGATAGAGAAGCTGCAGGCCAAGGTGGTGGAGCTGAGGAGGAAGCTGGACGACACGACGGCAGCCATGCAGGAGCTGGGCAGAGAGAACCAGTCGCTCCAGATCAAGCAGTGCCAGAGTCTGACCAGGAAGTGGGCCGAGGATCACGAGGTGCAGAACTGCATGGCCTGTGGGAAAGGCTTTAGCGTCACTGTCAGGAAGCACCATTGCAGACATTGCGGCAACATTTTTTGTGCCGAGTGTTCATCGAGGAACGCCTTCACGCCGTCCTCTAAAAAGCCAGTACGAGTCTGTGAGACGTGCTTTGAGGACCTCCAAGGCTGATTTCACTCCCATCCCTTcaaaccccaccccccccaccccacccactTCCTACTTCAGCGGGCAGAAGAAGCCGTGTCTTTGTCATATTCAATGTGCACTATTAAGGACAAACCCAGCGCAAAGACTCCCACCTGCATGTGACTTCCGGCTCTCGTGTGGAGGGAAATAATGGAAGGGAGACACCAGAGCCACGTGATTGGGGTTGGATTTGGTTGGGATTGTCTGTATCTGTTTTTGTGCCTTTGCTACCCCTGCAGACTGCCAGAGAGCGGAGGCAGCGAGAACTAAACACCATCCATCTCTTTAAGTTCCTATTCACCATCtccactgtttgtttgttttcagatTCATTAGTAAGTGAAAGGTGGTTGCTGTGTATGTTGTAAGATGTTTGGTGTCAGCTGTCAGGAGGTGTAAGGTCAGCGTGACACTGCAAGGGTGACTGGAGGAAGTAAATATTGTCATGGGACGTTGAAAATCACTGCTGCCCTACAAAAGTAAATGCAGGTAACTATTTTGTCAAGTAAAGGAAAAATCTGTAAATATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113413 lncRNA downstream 1058 12687483 ~ 12688635 (-) True G84243
TU113414 lncRNA downstream 2406 12687034 ~ 12687287 (-) True G84244
TU113401 lncRNA downstream 76417 12580603 ~ 12613276 (-) True G84236
TU113270 lncRNA downstream 484162 12205241 ~ 12205531 (-) True G84130
TU113268 lncRNA downstream 488858 12177943 ~ 12200835 (-) True G84129
TU113491 lncRNA upstream 118004 12830356 ~ 12834571 (-) True G84294
TU113522 lncRNA upstream 173311 12885663 ~ 12885917 (-) True G84320
TU113523 lncRNA upstream 174239 12886591 ~ 12886903 (-) True G84321
TU113527 lncRNA upstream 179674 12892026 ~ 12893439 (-) True G84324
TU113529 lncRNA upstream 184707 12897059 ~ 12898557 (-) True G84326
XM_039809584.1 mRNA downstream 29525 12600381 ~ 12660168 (-) True itpr2
XM_039809860.1 mRNA downstream 102202 12585311 ~ 12587491 (-) True bhlhe41
XM_039807861.1 mRNA downstream 126322 12553508 ~ 12563371 (-) True kras
XM_039807860.1 mRNA downstream 126324 12553508 ~ 12563369 (-) False kras
XM_039807863.1 mRNA downstream 126330 12553483 ~ 12563363 (-) False kras
XM_039808782.1 mRNA upstream 101 12712453 ~ 12727343 (-) False nudt4a
XM_039808781.1 mRNA upstream 101 12712453 ~ 12727340 (-) True nudt4a
XM_039808780.1 mRNA upstream 101 12712453 ~ 12720456 (-) False nudt4a
XM_039808783.1 mRNA upstream 18003 12730355 ~ 12736681 (-) True ube2na
XM_039809442.1 mRNA upstream 29790 12742142 ~ 12758791 (-) True nr1h4
TU113260 other downstream 545147 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 801295 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2027015 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2257549 10427562 ~ 10432144 (-) True G83826
XR_005640102.1 other downstream 2509696 10174824 ~ 10179997 (-) False tdg.2
TU113814 other upstream 518265 13230617 ~ 13231095 (-) True G84530
TU113910 other upstream 861479 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 1318752 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 1510898 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1789608 14501960 ~ 14507201 (-) False LOC120563775

Expression Profile