RNA id: XM_039809649.1


Basic Information

Item Value
RNA id XM_039809649.1
length 1743
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC120564552
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 20590302 ~ 20596104 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttgcaCTCATTCAGTAGACTGAAAACAAAGCTTTTGGTTAGTTTGTTCAGTCAGGTTATGATCTTAAACAATTCCAAAGCAGCTGACCGATGTCAACTAGCCAGCAGAGTTTTATTTATGGCTGTAGCTCCTCAGATGCTCACCAGCAGctgttgtgaatgtgtgtgagcgCATGCGTGTCTGGACTTTCTCATTCTTCTGACCGTACAACTTTGTCTGGAAATCACAGTCACAATGACTCTCCAGTGGACAGCTGTGGCTTTCTTCCTCTATGCAGAGATAGTAGTCAATCTCATCTTGTGTATACCCTTCATATCAGCACGGAGGTGGCGTTCGGTTTTCAGCTGGAGAATATGGAACTGGTTATCTCCATATTGGAACAAGTGCTTCGTTACTATGATCATGGTTCTTATTGTTCTTTTCCTTGATGCTGTCCGTGAAGTGCAGAAGTACTCAGGTCCTGAGCCCATGCACGACGCCAAGGTGAACCCAAATTTGTACGACAATGTCCACATGAAGCTGTTCAGAGCCCAGAGGAACCTCTACATATCTggcttctctctcttcctctggcTTATCATGCGTCGGATTGTCACCTTGCTAAACCAGGTTGCTATCACCGTGGAGAACAGTTCAGGTCTTCAGGCACAAATGGACAGTGCTGTCAAAGCAGCCAAGAAGCATCAGGATGACAACTTGATGCTCAAACAAGCTCTCCTGGATGAGGAACAATCCACGTCAGCAAAAACCCAGCAAATGAAGCTGGAGGCTGACAAGTTGGCGGATCAAGTGAAAGCTGCTGAGGAGGCTGTACGCAAGTCTCATGCTGAAGTGGAGGCCATGAGGAGGCAGGCCAAAGGTCTGGCACATGAGTATGACAGACTATTGAGGGAACACCATCAACtccagAATCTCCAGAGTCCTGCAGACAAAAAGGATCAATAACCACAGGAACACTGATTTCTTCTGTACATGAATACCTTTTCTTATTATTACACTACAACTGTGTGCTGTATGCAGTATGCCACTAGAGGCAAtgtttgtattatattttacaacTTTAATTTTCTTTTGAAGTTTGAACCGAGGCACGTTTTTTAATTGATGGGATTAACGGTAGGCTACAGTATATCTGATAAACAGGAGCATGCTGACATCTTCTTACTAAAGTCTTTATCAtgaacataaaacatttgcatgtTACTCTACTATTAGTTAAAGTGTACAAATGAATTGAAAGCTAACATTTAATATTAATACCTgataaccaacaacaacaaagaaatgcattattttatgcaaaattTGATGTCACTTGCATACACCAGACCACCGCAATAGTCTTCCTGTAAGCACATAATGACTAATGCATACATGCTGTACATTAAGTCATTGAATTGTTTTATATGCATTTTTTCAGATAGTAAAGATAGAAAgtggggagagaaagaggggatgacatgcagcaaatggccacaggtcggatttaAACAGACAAAAGCAAAAGCCACACAAAAGCCGTTTCATTTGTTCAATGAGAGAGTGCACTTGACTTGATGTGTTCATGATCAACATCTCTGTTCAAATTCTTAAAAAACTGTTCTCAGCATCCTGGAATGGTAGATCTACAATCAAACCCAACAATTTAGAGTTGGCTCGACTATTCTTGACACTTTGTAATTAGTTGACAGTTTGATTGGTGTATGAAAAATGCaggacaaataaacacatatgaACCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116815 lncRNA downstream 128479 20402744 ~ 20461823 (-) True G86686
TU116788 lncRNA downstream 326096 20250890 ~ 20264206 (-) False G86660
TU116787 lncRNA downstream 337776 20250890 ~ 20252526 (-) True G86660
TU116779 lncRNA downstream 348452 20241433 ~ 20241850 (-) True G86652
TU116708 lncRNA downstream 574490 20014338 ~ 20015812 (-) True G86605
TU116909 lncRNA upstream 105111 20698815 ~ 20699637 (-) True G86761
TU117040 lncRNA upstream 314685 20908389 ~ 20908590 (-) True G86853
TU117182 lncRNA upstream 508926 21102630 ~ 21103379 (-) True G86976
XR_005639947.1 lncRNA upstream 546803 21140507 ~ 21146513 (-) True LOC120563411
TU117244 lncRNA upstream 651306 21245010 ~ 21251759 (-) True G87030
XM_039807722.1 mRNA downstream 297184 20275877 ~ 20293118 (-) False LOC120563518
XM_039807723.1 mRNA downstream 297596 20275877 ~ 20292706 (-) False LOC120563518
XM_039807724.1 mRNA downstream 297720 20275877 ~ 20292582 (-) False LOC120563518
XM_039807721.1 mRNA downstream 297720 20275877 ~ 20292582 (-) True LOC120563518
XM_039807729.1 mRNA downstream 332525 20256444 ~ 20257777 (-) True LOC120563522
XM_039809647.1 mRNA upstream 10320 20604024 ~ 20610068 (-) True LOC120564551
XM_039807871.1 mRNA upstream 81732 20675436 ~ 20686687 (-) False hbp1
XM_039807875.1 mRNA upstream 81732 20675436 ~ 20686687 (-) False hbp1
XM_039807874.1 mRNA upstream 81732 20675436 ~ 20686584 (-) False hbp1
XM_039807872.1 mRNA upstream 81732 20675436 ~ 20686560 (-) False hbp1
TU116763 other downstream 331043 20252639 ~ 20259259 (-) True G86638
unassigned_transcript_376 other downstream 907385 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 1018380 19570302 ~ 19571922 (-) False cep152
TU116428 other downstream 1201727 19387822 ~ 19388575 (-) True G86402
TU116306 other downstream 1272892 19315435 ~ 19317410 (-) False arpp19b
XR_005640056.1 other upstream 213178 20806882 ~ 20828603 (-) False LOC120564033
TU117029 other upstream 284007 20877711 ~ 20879638 (-) False LOC120563850
TU117396 other upstream 1119338 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 1141302 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other upstream 1141302 21735006 ~ 21739328 (-) False LOC120564778

Expression Profile