RNA id: XM_039809654.1


Basic Information

Item Value
RNA id XM_039809654.1
length 3559
RNA type mRNA
GC content 0.50
exon number 21
gene id nell2a
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 22091533 ~ 22211840 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGCCGCAGGCAGCTCCCATCCCCGCTGCTGTAGGAGCGTCTGTTCAGCTGGAGAGGAAGCAGCAGCTCGCTTTGTGTTACCCACCTGTGCCGCGGATGGTGGTGATGGAGCAGATTTTGCGTCGCATGGAATAATTTTGTACacagttacatttttcttctatccGGATTTGCTTTTTGCATCATTGGGCATCTAAAGTTGTGATGATGCCTCCGCTCAGCATTTGGGATTGGTAATAGCCTTCTGCGCGAGGGTGATACATCATTCGCATGTGATTGAACAATCCTGTCTCTCGGAAGTGGACAAAACATGgactaattttttttattttttatatatatatatatatatatatacattcacCATGGGATTATTACAGCTATTTCTTGTTCTCGGCATATTTTGCGCCTCCTCAGTTGTAGGTTTTGGGGTTGACCCTGCCCTGCGCATCAGCGTGTTTGATGAACTCATGCTTGGGGAAGGCTTTGATGGAGTTACTCAGGTCCAGGGCTTCCACAGCGAGTCTAGAGCTTTCCACTTTCAAGGGTCTGCCAGGGAAGTGATGGCTCCTGTTGAAGTCTCAGAGCAAATGATCCAGAAGCTGAGAGGCAAGAATGAGTTTACTGTGCTGGCGACCCTCAAACAAGATCACCTAAACTCTGGGGTCATCCTCTCTATTCATCACTCTGAGAACAGGTTCTTGGAGCTGGAGAGCAGTGGCCAGCGCAGTGAGGTACGTCTTCACTACCGTACCAAAGGCCAACAGCCCCACACTGAGGTTTTCCCTTACAGCCTGGCTGATGACCAGTGGCACAAGGTCTCTGTGGCCGTCAGTGCCTCTCATGTTATTCTACATGTCGACTGTAACAGGATCTACGAGCGTGTCATGGAAGCCCCCTACATGGACATACCTGAGGATGCTTCCTTCTGGCTCGGACAGAGAAACGCTGCTCATGGCTTCTTCAAAGGAGTGATGCAGGACGTGGAGATCCTGGTTATGCCACAGGGTTACATCTCACAGTGTCCAGATCTGAACAGAACATGCCCAACCTGCAATGATTTCCACGGACTTGTGCAGAAAATCATGGAACTGCAGGATATTCTTGCTAAAACATCCAGCAagCTGTCCAGGGCGGAGGAGAAGATGAATGGGCTGGATGGTTGCTATTGTGAGAGAACCTGCAGTGTCAAGGGGGTCGTCTACAGGGAGGATGAGGGCTGGACAGATGGCTGCAGGAACTGCACATGCACGAATGGCACGGTGCAATGTGAGGCCATCTCCTGCCCTCCTCCTCAATGCCCGGCAGGCACAGCGCCTGCCTACGTAAAGGGTGCCTGCTGCAAGGAGTGCCAGCCTGTCTGCCTGTTTGGTGGAAGGGAGCTGGTGGAGGGTGATCAGAAGGCTGTACTCGACTCCTCTGGCAGGTGCCTGCTGTTTGAATGCAGGGACCGGACCATGCATCGAGCGGTCCCCAGTGAGCCTTGTCCAAAACTCAACTGTGCAGAGTCGGAGCAGATCACCTTGAATGACAGATGCTGCAAAGTCTGCAGAGGTCATGACTTCTGCTCAGAGGGCCACAGCTGCGTGGAGCACTCCGACTGTGTGAACCTGGAGGcaggagactgctgtgtttgtaAGGATGGCTTCCGTCCACTGCGAGACGATAATGCCTACTGTGAAGATATTGACGAGTGCGCTGAAGGGAAGCACTACTGCAGGGAGAACACCATGTGCGTTAACACCCCTGGCTCCTTCATGTGCATCTGCCATACGGGCTACATCAGGATCGATGACTATTCCTGCACAGAGCATGATGAATGCCTCAGCGGGCTCCACAACTGCGATGAGAACGCCCTGTGCTTTAACATGGTTGGAGGCCACAGCTGCTCCTGTAAGCCGGGCTACACTGGCAATGGAACAGTCTGCAAAGCTATGTGTGACGGATTGTGCCAGAATGGGGGAACCTGCATCTCACCTAACAACTGTGTTTGCCAGCAAGGATTCACTGGGAAGAGATGCGAGACAGaTATTGATGAGTGTGCGGACGGCTTTGTTGAGTGTGATAGTAAATCCACTTGTGTCAACTTGCCCGGCTGGTACCACTGTGAGTGTCGTGATGGCTACCATGACAACGGCTTGTTTTCCGCCAGTGGGGAATCATGTGTAGATATTAATGAATGCAAGACAGGGAGGAACACCTGTGCCAATGACACGGTGTGCTTCAACCTGGACGGAGGCTACGACTGCCGATGCCCTCACGGACACAACTGCAGCGGCGACTGTATCCATGACAACAAGGTCAAGCACAGTGGGCAGATCTGGGTGCTGGACAGCGATAGGTGCTCTGTGTGCTCCTGCCAGGTAAGAAACACAGAATGTAGAAGGTATGTGTgtgggtgtgaCAACAAAAACCACCCCCACCTGTTCTGCTGCCCCGAGTGCGACCCTCGACTGAGCAGCCAGTGTCTGCACCAGAATGGCCTGCTCACCTACGGCAGCGGGGACACATGGGTGGAAAACTGCCAGCAGTGCCAGTGCCTGCAGGGGCAGGTGGACTGCTGGCCTCTGCCATGCCCGCCCGTGGACTGTGAGTTTACCGTGGTGCCTGAGGGCGAGTGCTGTCCCCGCTGTGTCACCGACCCCTGCCAGGCCGACACTATCCGCAACGACATCACCAAGACGTGCACGGACGAGCACAGCATCTCACGCTTCAGTGGCTCCTCCTGGATTAAACATGGCACAGAGTGCACCCTGTGCCAGTGCAAGaATGGACACATCTGTTGCTCAGTGGACCCCATGTGCCTTTAGTCCCGGCAGATCTGAAGGCACCTGTACAGTGTTctccatgtaaaaaaaaaaaagtaacaccACCCCTATGTCTCCCCACTGTCCCCCTCACAGGCGTGGGTCAGATAGTGTTTGTTAAGATTTGTTTTTGCCTGCTAAACCAGATGGATGGGGGTTACTAATCAGGATAATTCATACAATGTCACATTGTCCAATACAGACAATTGCTCAAATGTAACCTTCAGGTACTTTCTGCAGATTGCTAGCTCTCATTGTATGTTCTATATGGTAAACCCCAGCCAACTGGTACCTCATGCACATCGAGCATTAACATTGTTCAAATACTGTGTGACCCACGTCTGCCTCCTCAACTCCTCTTTATACCAAATGCAAGCCTATATCATACCAAACAGATGACGGACTACAGTTTCCTAAAACCCACTCTCTTTGTTCTGTCTCACCACTTAAGAGTGAACCTTTAAGGATCACCGTTCCCCACTCCGAATCATCGCTACATGAATCTGTAACATATTAATATTACTGGCATGACTGTGCTTGATGTCCAAACATTTTTGCTGATTTCTAAATTCTCAGTTATGATGATATCTTAGATAGAGTAAAGGCAGTTAGCATAAGGTTCTGTTGCCACATTTATGAATTGTCTATATTATGTGGTGCATTGTAGCTTTTTGTTCTATTTCTcttatttgtaattttttcccCCAAGCTTGTTATTGTGTAATAGTGAAATAAAAGTAtttccatttaca

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24342 NELL; protein kinase C-binding protein NELL

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117537 lncRNA downstream 8995 22070958 ~ 22082538 (-) True G87249
TU117515 lncRNA downstream 83138 22005499 ~ 22008395 (-) True G87232
TU117411 lncRNA downstream 365875 21724923 ~ 21725658 (-) True G87148
TU117376 lncRNA downstream 541674 21546658 ~ 21549859 (-) True G87123
TU117371 lncRNA downstream 579005 21486532 ~ 21512528 (-) True G87120
TU117622 lncRNA upstream 76104 22287944 ~ 22355196 (-) True G87320
TU117629 lncRNA upstream 138552 22350392 ~ 22366978 (-) False LOC120564428
TU117635 lncRNA upstream 176155 22387995 ~ 22390216 (-) True G87329
XR_005639987.1 lncRNA upstream 365177 22577017 ~ 22682276 (-) True LOC120563633
TU117745 lncRNA upstream 549345 22761185 ~ 22837866 (-) False G87400
XM_039807634.1 mRNA downstream 62460 22013911 ~ 22029073 (-) True twf1a
XM_039807628.1 mRNA downstream 130466 21874973 ~ 21961067 (-) True LOC120563465
XM_039809867.1 mRNA downstream 297652 21765682 ~ 21793881 (-) False prickle1a
XM_039809868.1 mRNA downstream 297652 21765682 ~ 21793881 (-) True prickle1a
XM_039809869.1 mRNA downstream 312783 21765682 ~ 21778750 (-) False prickle1a
XM_039809412.1 mRNA upstream 19091 22230931 ~ 22233599 (-) False LOC120564446
XM_039809411.1 mRNA upstream 19091 22230931 ~ 22233599 (-) True LOC120564446
XM_039809373.1 mRNA upstream 22896 22234736 ~ 22236927 (-) True szl
XM_039808211.1 mRNA upstream 28225 22240065 ~ 22265797 (-) True mov10l1
XM_039809372.1 mRNA upstream 135330 22347170 ~ 22366863 (-) True LOC120564428
TU117418 other downstream 352205 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other downstream 352205 21735006 ~ 21739328 (-) False LOC120564778
TU117396 other downstream 377979 21713042 ~ 21713554 (-) True G87140
TU117029 other downstream 1211895 20877711 ~ 20879638 (-) False LOC120563850
XR_005640056.1 other downstream 1262930 20806882 ~ 20828603 (-) False LOC120564033
XR_005639990.1 other upstream 477321 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other upstream 479208 22691048 ~ 22706196 (-) False parvg
TU117944 other upstream 1282490 23494330 ~ 23498659 (-) True G87538
TU118073 other upstream 1527142 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 1693262 23905102 ~ 23905173 (-) True trnam-cau_7

Expression Profile