RNA id: XM_039809655.1


Basic Information

Item Value
RNA id XM_039809655.1
length 2220
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC120564556
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 32578557 ~ 32593826 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTAGCCATTTGTGCCATCTAGCGGTTAAATATTAAACTTGTACATAGCCTACTGAAGGAGCTTCTGTTTGGACGTGGGTTGTTCCACTGGTTGCTTTCTCCTGCGTGTCCACCCGCCTTTTATCAACTAAAGAAACGAAGTGGTTATTCAACGtcttttcattattttgtaTACATGGCTTCAATAAAAGAAAGAGCCGCGGCGTTAAACCTTGCAGAAAAACTGTGTGTGCCTCTTCAAGCTCATGGAGTGGCCAGTAAACCAGTCCAGTCTCCCTTAATTTGGAGTGGCCTCATCTCCCACCTCAGGTCTTCTGTGACAGTGAAACGTCGACGAGTCCACCTTAAGTCTCACAACGACTGTTTCTTCGGCTCAGAGGCTGTTGATGTGGTGGCAGAACACATCAGCTGTGTCAAAGTcttggaggGTGCCAATGTGTCACGGGACAAAGTGGCGTGTGTGTGCCAGGCTCTGTTGGACTGTAATGTGTTTGAGGCAGTGGGTACCAAAGTATTTGGCAAAGACAAGAAGCAAGATGTGTTTCAGGACAGCAAGAGTGCTCTTTACAGGTTTGTAGGTGTGTGTTCTCCTTCGGTCGATGAGTTGGAAAGAGGTTTGCTTGTGAAAGGGATCCAAAGACTCTTCTGCAGTGCTCCTTCAGACAGGCAGGAAGAGCAGACATGTCCTACTGGCTCACATGTTCAGATGTCAACCCCTGTCAAATGTACTCAGACATCCATAAAAGCCAACCAACTGGACACTCCTGCCACTGCCAGCCTGTCACTGGAGCCTCTGGTGGACAGTGTGAGTCCCAGCAGAGTGCTGACTGACACTGTTTTACCACAATCATTGGTAAACGAGGTATGGCAGGAGCAGACTCTGCTCAGGCTGTTAAACCTGGTGGAGCTCCCCCTCCTGGAAGCGGTGCTTCAATGCAGCCAGACCCCATCCCCTCCTCCAATTAACCTGCTGGCTCACAGTAACCCAGACCTGATCTACGGCAGCAACCACCTGGACAGGCAGATCATCAGGGCCTTCAGGGACTCTCAGGAGGATGAGTGGATCTGTGCAGCTCTGGACTGTCTGGACTTCCTTCCTGATCAGCCAGTGGTGGAGCTGAGCAGGGAGCTGCCGCACTGTTTCCCGCAAGATCAGGACAGCTGTGAGCAAGTGCGGTTGGTCTTCAAGAGCAAGACAAGAAACTGGTTGCAGTCTCTGAGGTATGTGTCCACCCCAGTCAACAACAGTGATGAGCAGCCTCCTCTCTCCCAGAGGGGTTTGGCCCAATGTAAGCTGCTGCTGTACGGGACCCTGGTGAAACATTACAGCCACGCAGACAGACTTCCACTGCTGCCCCAGTACATGACTGACATCTACACAGCCATCACTGACCTGCTGGGGAATGCTAAAATAGGCATAGCTCTTGAAGCTCTGCAGTTGTGTCTGAAGTTGCTGCCTTCTGGCTGCAGAGATGAGCTGCGCAAGCTGCTTACATTCATGGCTCTGGCAGCTGACGCGCAAGGGATACAACTGGACAAGGAGATGGAGAACAGACAGGCAGTGAAGAGGTCTTTCTCGAGGGCAATACTCTACAGCAGGGCTCTttcaaaagagaaagaggacctGATGGTGGTCTTCATACTCAGCAACATAAAGGACATTTTTAAGATACCAGGGGCTCTGCACAAAGGAGTGAGTGACAAGCTGGCCAGTCTTGTACAGGGGAAGCAGCCCGATGTGACTGGCTTTACGTTCTGTCAGCGTGTCTCCAGCAGGACTTGCGCTGACTCTACAAAGAAGACCACCAACCAGGAACTGTGGATTATGTTAAACAGCATCCACCTGGACACCAAGAGATCTGCCAAGGAGAAAAAGCGCCTACTTGGACAGTTTTATCAAGCCCACCCTGAGATATTTATCCAGTACTTTGGTGAATCTGCTGTTAATGTGCTGTAGTTTTGTGAAGACTATGACACAGTCtatatctctctttttctctctcttttacagtCAGTTTCAACAGTAGCTACTTTttgctttttacatttttggtaaATTGATTGTCTTTCAGACACAAGCTAACTGACTTAAGACATATTTGTGACTGACAATAAATCTTAGTGGAAATTTTAAAGATACCTCCAGCATATGATAGAGCTTGTAGGTGTGTATTTGCTTTATTGAagaagaacataaataaacagatgatatgtgttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120368 lncRNA downstream 267446 32310897 ~ 32311111 (-) True G89395
XR_005639967.1 lncRNA downstream 306840 32271247 ~ 32271717 (-) True LOC120563490
TU120358 lncRNA downstream 311542 32261973 ~ 32267015 (-) True G89385
TU120339 lncRNA downstream 394838 32180785 ~ 32183719 (-) True G89369
TU120329 lncRNA downstream 440940 32081393 ~ 32137617 (-) True G89360
TU120515 lncRNA upstream 192972 32786798 ~ 32787949 (-) False fa2h
TU120517 lncRNA upstream 197134 32790960 ~ 32792001 (-) False fa2h
TU120520 lncRNA upstream 268474 32862300 ~ 32862566 (-) True G89522
TU120579 lncRNA upstream 312179 32906005 ~ 32907529 (-) False znf319b
TU120591 lncRNA upstream 398263 32992089 ~ 32993049 (-) True G89577
XM_039809260.1 mRNA downstream 5834 32570069 ~ 32572723 (-) True LOC120564368
XM_039807457.1 mRNA downstream 15827 32554289 ~ 32562730 (-) False tcp11l1
XM_039807458.1 mRNA downstream 15845 32554289 ~ 32562712 (-) False tcp11l1
XM_039807456.1 mRNA downstream 15854 32554289 ~ 32562703 (-) False tcp11l1
XM_039807455.1 mRNA downstream 15860 32552579 ~ 32562697 (-) True tcp11l1
XM_039809289.1 mRNA upstream 168855 32762681 ~ 32781102 (-) False ano10b
XM_039809287.1 mRNA upstream 168855 32762681 ~ 32781102 (-) False ano10b
XM_039809288.1 mRNA upstream 168855 32762681 ~ 32781102 (-) True ano10b
XM_039809668.1 mRNA upstream 193697 32787523 ~ 32851495 (-) True fa2h
XM_039809669.1 mRNA upstream 193697 32787523 ~ 32833824 (-) False fa2h
TU120334 other downstream 470491 32106623 ~ 32108066 (-) True G89365
TU120195 other downstream 1328144 31243168 ~ 31250413 (-) True G89241
TU120007 other downstream 1856054 30722108 ~ 30722503 (-) True G89085
TU119050 other downstream 5222781 27354972 ~ 27355776 (-) True G88379
TU118971 other downstream 5349591 27224052 ~ 27228966 (-) False zgc:153031
TU120516 other upstream 210848 32804674 ~ 32851458 (-) False fa2h
TU120952 other upstream 1630435 34224261 ~ 34225516 (-) True G89849
TU120978 other upstream 1720705 34314531 ~ 34315143 (-) True G89873
TU120974 other upstream 1737354 34331180 ~ 34331996 (-) True G89870
TU120958 other upstream 1791615 34385441 ~ 34386032 (-) False LOC120563661

Expression Profile