RNA id: XM_039809684.1


Basic Information

Item Value
RNA id XM_039809684.1
length 9381
RNA type mRNA
GC content 0.49
exon number 28
gene id LOC120564570
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 13273770 ~ 13301322 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAAAACCCGTTTTCTTCGTCAATATGTAACCACTGCGCCGCTTGTTTGAGCCCACAAATCGCAACTTTGATGTTCACTAATTGGATGACGTGTCTGCTTGACAGTAAGGATAGTGTACACGTATTCCCCATTATAAATGCGAAGACGGATTAACGCTGTAAGGACAATTTAAACGCCGATGCTTGTCAGCTGTATTGTGGATAACGTTACGATCTAGAGTGAACCTGGACTGGAGCATATTCCAAGTGTCTGGCCTTCCTGCCTTTCCTGCATTCAGTGACTGTTGTGGGCTCTGGATGTTTTTTTCCTAATCAGTGATTCCTTATGCTTGATAGAAGCTGCACCCTGTGTCTTGCAGGATGGATGGTGTGGACTTAAAGAGACTTGTGTATCAACATCAGCACTCTGTGTTTTGCTGTGGTGTTCAATCTTTTACCATTTACAAGAGAACACCTCCCATTCTACACCTCCAATCTCTgcactatatatataaagaCTGTCTTTGAGCAGTAAAAAAGAGAGCTGAAGGTAGAAGTtgttagactttttttcttttcaaacacaCATCGATACTGCTTACATAAGCCTATATGACGGACATGGAAGAATACTTATTTTAATTAGTTATTGTACACCCTTACTCTTAGTGTGGGTGGTGGGATGTCGGAAAAGCCAGACAACAGAATGGTGAAGTTCCTGGCTCCCCCTCAAAAGAGTGGAAATGGCCCCAGTTCTGGTTCAGATTCAATGGTGAGTGAGTGCCGGCCAACAGAGGTGAGACGCCGGCATCACACCATGGAGCGGGATCGATGTAACCCTGAACACCGTTTCTTGCGCCGCAGTGTCATCAGTGATTCCAATGCTACTGCATTGGCCCTCCCTTTACCCAGCAAGATCCCCATCCCTGCACCTCAACGGGTTCACCTACGAGAAGCTGCCCCCGAGCGGCAACTGGCTGCTGCTACTGGTCATCTGCAGCGGGCTGAACCAATTTTAGCTCAAAATGCAGAGTCTGCTGATAGTGGAGGAGGAGTAGAAGGAAAAGGAATAGCCAAGGTGGATGTAGTGCCTTCAGAAAAGGAGCCTGCCATTTTACAAGATACCTGTGATGGAGAGGTTGTGTTAGCAGCCTGCTCCGCACCAGGCTTAGGAACAGAATTGCCAAGTCAAACAGAACCTGAAAGCACCACTGAGGTGAAGGATCATAATGAagaagagggggaggaagaaGATAAGGACTCTGCCAAGGCACGAGCAGAGGCAGAACAGAGAGAAGCTGAGAAAAAAGTGCAGGATGACATTGAAGAGGCAGAGACCAAAGCAGTTGGAACATCCCCAGATGGGCGTTTCCTAAAGTTTGATATAGAAATTGGACGTGGCTCCTTCAAGACTGTGTACAAGGGCTTGGACACTGAGACCACAGTGGAGGTGGCTTGGTGTGAGCTGCAGGATCGTAAGCTTTCAAAGACAGAGAGGCAGCGCTTTAAGGAGGAAGCAGGAATGTTAAAGGGACTACAGCATCCCAACATTGTCCGCTTTTACGATTCCTGGGAAGGACCCTCCAAAGGCAGGAAGTGCATTGTATTGGTCACTGAACTCATGACTTCTGGCACACTCAAAACATATCTGAAGCGGTTCAAGGTGATGAAAATTAAAGTGCTGCGGAGCTGGTGTAGACAAATCCTCAAGGGGCTCCACTTCCTTCATACTCGGGCTCCCCCCATCATCCACAGGGACCTTAAGTGCGACAATATTTTCATCACCGGCCCAACAGGATCTGTCAAGATTGGAGACTTGGGACTGGCCACACTCAAGCGTGCATCATTTGCCAAGAGTGTTATAGGTACCCCTGAGTTCATGGCGCCTGAGATGTATGAAGAGAAGTACGACGAGTCAGTGGATGTGTATGCCTTTGGAATGTGCATGCTGGAGATGGCCACCTCAGAGTACCCTTACTCAGAGTGCCAGAACGCTGCACAGATCTACCGCAGAGTTACCAGCGGGGTGAAGCCGGGCAGCTTCGACAAGGTGGCCATTCCTGAAGTGAAGGAGATCATCGAGGGATGCATTCGCCAGAACAAGGATGAGAGGTACTCGATCAAGGACCTTCTGAACCATGCCTTCTTCCAGGAGGACACAGGGGTGCGTGTGGAGTTGGCGGAAGAAGATGATGGAGAGATGGAGTATATTAAGCTGTGGCTGAGAATTGAGGATGTGAAGAAACTCAAGGGAaaatacaaagacaacgaaGCTATTGAGTTTTCTTTTGACCTCAACAAAGACGTACCAGAGGATGTGGCTCAGGAAATGGTCGAGTCTGGTTATGTATGCGAAGGTGACCACAAGACCATTGCAAAGGCCATAAAGGACAGGGTGTCTCTAATCAGTCGCAAGAGAGCACAGCGACAGCAGGTCAGAGAAAATCAGGAGAAGAGAAGGCTAGAAGAAGAACAACAGCAGAGTCAGTTACCTCCAGCACAGCAACCAGGCCAGCAGTCAAGCACGGAGGTGCCTCAGGTACAGCCAGTGCCACAGCCTGCTGCTTATGTCCCTCCACAACCAAACCAACACAGCACACAGATGTCTGCTCAACCTGCATCTCAGCAGAGCCTTCAGAGTTCTAACTTTAACACTCCTCAATCAACCCAACTGACCAGCATGGCACAGGGTGTCCCTTATATCCCCCAGTCAACTGGGCAAGTCCCAGTTCAGGGTCCGAGTGTGGCCACCATCCAGCTAGAGTCTGAGGAGCCTGAGACTGACCAACACCAACAACTGCAGCACGCTGGAGGAGCCAGTCACATAGGAGACCGACTACCTGGTTCCACCATCCCTCCTGAGGTCCAGCCTCCTCAGTCTGGAATATCCTACAGCTCTCCTCCCAGTCATCACCTTCAGCCTCAGGTGTCACTCccacagacacaaaatgaccacacacaacaacagcagTTGTCAGTGGTTCAACCCCAGATGCAAGGTGTCCAGCCTGAGGTTGTTCCTGTTGCGCCAAGCAGCCAGTCTGTTCCAGTGACACCTCCACAGTACGGAGTTTACTACCAACCATCGCTTCCCCCTCAGattccCACCCAGCAAGTGATGATACCTCCATCCTCTCAGTCGTCTCCCTcccaacagcagcaacagtcAGAGAGCAGCACTTGTCTTCAGAGCTCCACTCTACCGCAGGCACAGACTGGAGTTCAGCAGCTACAGgCCCCTGCGAGTGTTCCTCAGTCAGCACCAGCAGAGCAGCCAGGATCCTCTGCTCTGGTGCCACCATCTGTAGACAGCTGCCTGTCAGATGCAGCTTCAGGTCTTAGTGACGGCAATGATGGAAGTTCTACATCAGGAGGTCGCCATGAGGGACGCTCACTGAAACGTCACCAGCGGCGATCTGTACGCAGCCGCTCCCGCCATGACAAAACTGCAAAGGCCAAGCTAAATGTTCTCAGTATCTCGAACGTGGGAGACCGAGTAGCAGAGTGCCAGCTGGAAACGCACAACAGGAAGATGGTGACCTTCAAGTTTGACCTTGATGGTGATAATCCGGAGGAGATTGCACAGATTATGGTTGAGAGTGTATTCATCTTGGAGAATGAGCGGGAGTCCTTCATCGAGCAGATTCGTGAAGTCATAGAAATGGCTGATGAGAAAGGAGAGGGCATGAAGGAAGGCTTTCCTCAGATGAGTGATCACCAACAACAGCCTGTGCTGTCTGTTCCCATGCTGCCAGGCATTTCCCCCAGCACTACATCTCAGGTGGTGCATTCGGCAGGACGGAGGTTTATAGTCAGCCCAGTGCCAGAGTCTCGTCTTAAAGAACAGTTCTTTGGATCTCCTTCTGCCAATACCTCCTTTGGAGATGAACCTGCTCCCTCTATACCATTGggtctttctctgtctgctcCATCTGGGATTCTCCAGCAGGCATTCAGTAAAATGAAGCAGGCCCGTGTAGAGAGATGCAGCACCCTTGATCCCCCTGCTGCTGAGCTAGAAGCAGGCACTACCTTGGCCACTGAGGCTGGACTCGGTCCAAACTCTAAAAATATCCTGGCTCCTCCAGAAGCGGTAGCTTCCACTGCTAGTACTACTTTTCCTGGCATGCCTCTCACATCCACTGCAACATCCTCACCACCTCCCTCAACTGGGAGAGTTTCCCCTCCACCTATAGCCACTCAGTCCCAAACTCCAGTTCCTGTCACCAGTGATCCCAGTCCACCTCCTCCGTCTTCCCATGAACCAGCCCCGTCACAGCTTCCACCAGCTGCCAGCATCCCGCCTACATCTTCCACCGTTTGTCCACCATCAGTACAGACCTCTGTCCCCGCAGTACCTGGGCCTCAACTGAGCAGTAGTTCTGTCTCGGTCTCTCCTGTTGCTAGTGTTACATCCAGTAGTACTGGCACTGCCCCTGCTCCAGAGCAGCAGCCTTTTAATAGTGCCGTTTCGTCCTCTCAGCCTGTGAATTCGGCCACCCATGCACCACAGCACACAACCTCCCAGGCTCAGCCTGTCCCCATTTCTGCTCAGCCCCCTCCTCCCACCGCGTTACCCAGTCAGAGCCAGGTCCAGCCACAGCCAGTGGAGTCCGAGGGGGCTGAGCTCCAGAACAAGACCGCTGGCAGAGATGATATCCAGGCTCTAGATAAGAAGCTACGGTCCCTCTTTAAAGATCAGAGTTCTGCGTCAGTGGATCAGAACACAGGCACCTCCTCTCCCCCCACTGGGACTTCTTCTCCTCCACCTGGAGCCGCCCTAGTGCCCCCATCTAACCTTCCCCTCACCTCTGGGGTGCAGGGTGTCCTGGGTCCCACAACCACCCCAGGACAGGGTATTACCTCTACTGGACAGACACCTCCAACTAAGCCCAGGGCACAGACTTTACCTACTGGTTTTGATCAAGCTGCTACACCTCCATCTGAACTTGCACCCCCTATTCCTGGACCAAATCAGTCCCAGAAACCCCTGGGTAATTTGGACGCCCAGTTAAGGAGAGCTCTGAGCCCTGAGACTGTTCAGGGAGGTAACAGAGTCCAGCCTCCGGCAGCTGGTTTCACTCTGGGACGTTTCCAAGTGTCTGTTGCTCCCGATGGTGTGACCAGCCGCATTCCAGATCCCTCAAGCATtgtttcctcttcttcccttgTGTCATCCTCTACctccccttcttcttcttcttcctcctcttcctcctcctcctcctcgtccccCTCAAGTCCAGAAAATACTCTCCACCGGTCATCCTCTCTGGCCAAAGGAGTTTGTGAAACTGACACAATAAATGCCTCCTCCCTCTCCGCTGGTCCTGCCAGCCAGCCCACCACTATTGGGCGCTTCCAAGTCTCCACGAGCACAAATGCCACATCCGGGCCAAGCAATGGCTCTAAAGTGGGACGTTTTTCCGTCACAGTGACCCCAGCTCCAGCAGCAGGCTCCAGTCCATCACATGGTTCCAGTATGCAGAATGGGCCCTCATCGTCAACGTCTGATCCTCATAACGCACACGCCCATTACAGTAGTGACAATAACGACGACTCTGAGACTGAGGACGAAGCTTTGCAAAAAGAAATTAGCCGTCTCAGGGAAAAACATATGATGGAGATCCAGATATTGCAGACTCGTCAGAAAGAGGAGATAGAGGCCCTGTTCACGCGGATGggaaaacctcctcctccttctgtctTCTCCCCTGCTGTGGCAATGGCTGGAGGTCGACGAAGGCTCAAAAGCAAAACCTACAAATCTGCTCGCAGTAGTGGAAAGCCCAGCCCCATACACTTAGGATCCCTTGCCTCAGCTCAGAGTCTTCATTGTTCAGAGTCCCCTCCAAAACAAGGTTCACCCTCAACATCAGAGGCCTCAGAAACCGCAACAGAGGCATCACAAGTTAACCGGTCATCCATAAAGCAGCTTAGATCCTCTCCATCTATGCCCAGCCTCAGTAGTTGCGCTACAGGATCAAGTGGGACCAGCTCCACTAATGGTTCAGGCCACAGCCAGAACCACTCAACTCCTCTGAGCCAGGCGACTGGACCCAGTCCTCCTTCCTCTCACACCCAGAAGGGCAAGGGTACCTTCACTGATGACCTGCACCAACTGGTGGATAACTGGGCCAGGGATATCAGCCTTTCCCAGTGCAAGAAAGGTCCTAAAACTGGAGCACCAGCACCTCTGGGACTTGATATTATCCCTCCAGCCAACATGGGCCGTAAATTCTCAGCCCCAGGCTACCTCTGTCCAACACTTCCCACGCCTTCCACCACCACGTCCACCACGTCCACTCATCTCCCCAACCCAGCTAATCCCTCTGTCCCTTTGGGGCCTCGTAAGGGCTCTCTGGGACCAGCTGCACCTGGGTTTGGATACACCTCAGCCCCATACAGTGCTCCTCAGTGGGCAGGACCCACAGGCACATGCCAGGTCAGCATGCTTAACCCCACACAGCCACTAACGCAGTACCAGCCGCCTACGACAGCCTCAGTGTCCCTGCACCAAGGCTATCACATGGGAACCACACCAGCCCCCCAGAATGCAGTCAGCCCTGGAGGGTCCAACCTAAGGCCTACGTAGCCCAGTTGTAGCCCTGGTCCAGGCTGAGACGGAGGGCCACGCAGGGCAGACAGTCATCAAACGAGAACCAATAGCTCTATTTACAGTTGGCTGGTTAGCTGGCTGgatattgtgctttttatttttatttcaacttttattattatgtgtttTTCCTGTAATAGAGTTGACCTGTGTGGTTCAAGTCCTCTCAGGCAGAATGAAATCTGTCTGGCAATTGGAGGGAGAGTGCAATACACATCCACAGCACAAGAGTCGTGCACTTAGCCTGCTATCAGCTGTGGAAATTGAGCTGTGATGAGTTGGTTGGTTGTGTCTGGTAATGTAATGACCCAAGGGCGTAACCCACAGCAGCCAAAGATGTCTATTCCTTTTGAAGAGGAGAAGGTAGTAGGAATCCTGGTTCACATCCTTACTGGTCCTGACTTGAAGCTGAGCTGGGACCGAAAACGGTTGAACTAATACACCACATAGACACACGTATAGACACAagtgtgcgcacgcacacacacacacacacacacctgactaAACATTAGCCTGGTTGAGTGACTTGGGATGGTAGGTTATGTTGTCTCAGAGAGCGATGGACGGAGTGTACAGAAAGTGGGAGATAAGAGTGGGACAGTTGGTTTGTCCCAGATGGAATAGCAAAGTGTGACTGGTTGAGTTGGGAGCAGAAAGAATAGTAAGTTAGGCAGGAGTGTAATGGATAGGGTGTCAGTATGAATACATCCCAATGGCTACCTATTAAGTAAAATGCAATAACGGCAAAGAGTAGATAAACTGTCCCTTGTAACTGTGGCCTTAATCcccaaacacatttaaacattgACTTTGTATATAGATATTTCTTCACTGGGTTATGATTCCATGTTAAGCATATTTATGTCCCTGTGAGTCTGGTGACATTGTGATTTGAGTTGTCCATCCATACAGATTTATTATACAGATTTATTCTTCATCTGATGTGTAAGCCAGTGGATctgccacataaaaaaaaaaaaaaacattgtcctGGTGTTGACCACCATTCGCAGTGTGAAACTTAAGAGGTGGTGCTGCTGTAAAATCACATTCTGGTTGAGGGTGTTTGCAGgtaggttttttttgttgttgtttttttacgtaAGAATGAAATGGGGGATCTTAAGTTGACACATGAAATAACTTAGTGCTGATATAAGCAGTTCAAGAAATAATTTTGGTTTATTGCAATAGTATTTGTTGAAGGTTTCAGTCTCTGAGGGGATGCAGCCTCCCCACTTCTACCAGTTGTTTACACCTATGGTGCCCAGTACACAGATGAACAGGTTGTTAGTGAAGTCAACACATTAAATAACATTTAGCCGTCACCTCTCAAATCACAAGTGTCTGGGGTTCTCTCTTTCTGTGGTCAGTTTTTGTATGCatatatttaataaaacaaatgttcttTATGGACCTGTATCAGCCATCAGATTTTGATGTTGTTTCACTGTAATTGTTATTAAAGGTTGTTAAACAACCTGTAGTTTAaaggaatataaaaaaaagtgcaattgCAGGGTGGTTGTTGTTGGTATCCTACTCATTACGCAGGAGTAATCCTGTGGTTTATTAAGCTCTTCTCTATGACTGCCCTGCCCACCCCCCCTTCtctattttattgtatttatgttaATGTGAGGTAAATGCTTTCACATAATGCTCCTTCACTAGAGTATGCTTGTGGTGACCCACTCTACATGCACATGCACTCTGAACTGTAAACATGAGGAACGCTTTAGTGCCTTGCATCTTCACTAATGACAAGTTCCAGATTCATCTAGTCCTGTAGCTGTGACTTCAGAAAACTAAACCTGTACATGACGTAAACACACAACAGGTGGCTCCATAACTGCCAGAGGATGTAATACTCTGAAACATTAGACGAGACACCACACAGGACTGCAGAACAAAGAGCACACGGAGTAATGTGGAAGCGTTTCGGTTCTCTCTACAGTTCAATTTGTGTTGGTTGTGTAATCGGCTGTGTATTTATATTTGGCTCAAGCGTACATGGATTTGgctgacatttgtttttgtggatTTATCATTAAACCGTTTCACAGATGCACTTGTTCAGGCAGCAAGTGAGCTGTATAAAGGTTTAAAGGTGGCTCAACTTTTGTCTCACCACCGCCTCAGACGAGTGCCATGCTGTCATTGTGATTCCTTTGGCCTGCTCGTAGATTGGATGAATAGTTAAACTTCTCTAGAGAAAAAATAAGTTACTGCAATGCAGAATATGCAATGTTTAAAATTTTAAAGGGAGTTTGGGGTAATGGAAACATTTGCATGCCGATGAGGGTTGTTACCGACTGACTTCAATGTTTTTGATATTGGAATATTagagatcctttttttttttattattattattattattattctttgcCTTCCTGAGAGTATTTGCATTGAGTGATCACAAATCAGTTTGCCATTCACCAATATCACAGGCAAAGCTTCGATATCAAACCATCGACATGATTTCTGCATGCCGGCTTCACTAGTGTTTAATCTTACAAATGACAACGTAACTCAAAACTGGCTACTGTACAGCACAAGGTCACAACAAAGCTCCTAAGGTCCATATGCTCCGATGCTATTACCAGTAATTATCACAGACCTCTCAGCACTGTTTGAGGCTTCTGACATGCAGTGATATCTCTTGAGCTCTTATTTTTGATCCCTCCTTACTGACCTCCTGTGATTCAGTGTctgttttgtgtatgtttttcaCATTGTACaaattgtaaaaacaaataaaaatataaattaaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113809 lncRNA downstream 1241 13271252 ~ 13272529 (-) True G84528
TU113832 lncRNA downstream 23972 13246828 ~ 13249798 (-) False prr5a
TU113817 lncRNA downstream 36909 13236651 ~ 13236861 (-) True G84533
TU113816 lncRNA downstream 38360 13235173 ~ 13235410 (-) True G84532
XR_005640039.1 lncRNA downstream 72107 13200943 ~ 13201663 (-) True LOC120563976
TU113825 lncRNA upstream 20861 13322182 ~ 13325258 (-) True G84536
TU113827 lncRNA upstream 20861 13322182 ~ 13324173 (-) False G84536
TU113867 lncRNA upstream 24665 13325986 ~ 13385205 (-) False LOC120564547
TU113907 lncRNA upstream 133418 13434739 ~ 13444612 (-) True G84585
TU113916 lncRNA upstream 343096 13644417 ~ 13644848 (-) True G84592
XM_039809624.1 mRNA downstream 17677 13247076 ~ 13256093 (-) True prr5a
XM_039809623.1 mRNA downstream 18859 13247076 ~ 13254911 (-) False prr5a
XM_039808534.1 mRNA downstream 27596 13244209 ~ 13246174 (-) True tmem60
XM_039809925.1 mRNA downstream 48728 13217937 ~ 13225042 (-) False LOC120564726
XM_039809924.1 mRNA downstream 48728 13217937 ~ 13225042 (-) True LOC120564726
XM_039809639.1 mRNA upstream 24652 13325973 ~ 13328125 (-) True LOC120564547
XM_039808969.1 mRNA upstream 85420 13386741 ~ 13387986 (-) True LOC120564184
XM_039808132.1 mRNA upstream 108252 13409573 ~ 13426661 (-) False nfat5a
XM_039808131.1 mRNA upstream 108252 13409573 ~ 13426661 (-) False nfat5a
XM_039808133.1 mRNA upstream 108252 13409573 ~ 13419281 (-) False nfat5a
TU113814 other downstream 42675 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 1129224 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 1385372 11888027 ~ 11888398 (-) True G84083
XR_005640086.1 other downstream 2611092 10644032 ~ 10662678 (-) False scamp2
TU112851 other downstream 2841626 10427562 ~ 10432144 (-) True G83826
TU113910 other upstream 272510 13573831 ~ 13617896 (-) True mafb
TU114030 other upstream 729783 14031104 ~ 14033215 (-) False zgc:77752
TU114145 other upstream 921929 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 1200639 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 1665134 14966455 ~ 14967447 (-) False si:ch1073-390k14.1

Expression Profile