RNA id: XM_039809699.1


Basic Information

Item Value
RNA id XM_039809699.1
length 2719
RNA type mRNA
GC content 0.50
exon number 18
gene id caprin1b
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 19799132 ~ 19812873 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTCTCACCGTCTCAGTTGTCGGTGAGGCCGGCGGGGCGGATCCCACGCtagagtgaaagagaaaataaagcaacacaacaaaaataacaacttggccgttttttttttacattcactaGCAAGCTCCCCTGTGGATATATACCATCAAGATGCCCTCAGCGATGAACGCAAATAGGACAGTGCAGTCTGCCAGCCCAGATGTGGGATCCGCTCCAGGGTCAATGATTAATTTTGCACTTGGTGGACAGTCCGAAGTTATGAAGCAAGTGCTGTGTGTCCTCGACAAGAAGGTCCGCAACATGGAGAAGAAAAAGAGTAAACTGGATGACTATCAAGTCAGGAAGGATAAAGGGGAGAGTCTCAATCAGGACCAGCTGGAGGCCCTCTCCAAATTCCAGGAAATCACAAATAACTTAGAATTTGGCCGAGAGTTGCAGAAGACGTTCATCACACTAGGACAAGATATCCAGAAGGTGGTGAAGAAGTCTGCACGGCGGGAGCAGCTGCAGCGGGAAGAGGCCGAGCAGAGGAGGCTGAAGACTGTTCTGGAGCTGCAGTTCCTCCTGGACCGGCTGGGAGAGGACACTGTGCGGCAGGACCTGAAGCAGGGAGTTGGTGGCTCAACGCCGCTGACAGATGCAGACCTCGCAGCTTTTGACGAGTTCTACAAGCTAGTGGGGCCAGACCGTGATCAAAACGTCAGGTTGGTTGACCAGTATGAAGAAGCATCTGTGCACCTCTGGGAGCTGCTGGAAGGGAAGGACAAGGCTGTGGTTGGAACAACGTACAAGGCACTGAGAGAGACTTTGGACCAGGTTCTGCTGAGTGGGTACTTTGACCGGGTTCCATCTCACCAAAACGgtgtgtgtgaggaggaggaggaggaagaggaagaagaagaagaagaagaagaggaggaggaggaggaggaggaggaagagccagcctcagcagcagcagcagcagcagcagctgaatCGTCAGAAGCAGGAGAGCAGGCTGCTGATCCAGAAACTGAAATAATTGAGGAATTTACAGAGCCCATTGCGATGGAAACAACAGAGTTTATAAACAGACAGTTCATTCCAGACGGCACATACAGCAGCAGTGAGAAGGAGCAAGGGGATGAGTGGACCACGGAAACAGAGGCAGTCAGTGCCATGCAGCAGCAGCCTATGCAGCCTTCGGCATCACCTGTTGCCCTGGAGACCCACCCCTTAAACCTAGCGTCTCCTGTGCCGCCTGCTGACCCCCTGGTCAGGAAGCAGGTGGTGCAGGACTTAATGGCACAGATGCAGGGAACGTACAACTTCATGCAGGACTCTATGCTGGAGTTTGACGGACAGCCCATTGATCCTGCCATTGTCTCAGCGCAGCCTATGAAACCCGCTCAGAACATGGACCTACCACAGATGGTGTGTCCCCCAGTTCACCCAGAGTCCCGGCTATCGCAACCCAACACTGTTCCTGTCCAACCTGAGCCCACACAGGTTCCTATCGTCTCTCCAACTCCGCCCCCTATGTATCAGACCTCACACACGCCAGATCCTCGACCCTCAACAGAAACCATCGACCCCATCCAGACCTCCATGTCCTTGTCGTCAGAGCAGCCTCCTCCCTCTACAGCTCTCCCACCTGTCCCTCAAACTCAAGTTTTCCAGCCTGTTTCCAAAGCTCCACACAGCAGTGGCATCAATGTCAACGCAGCACCATTCCAGTCAATGCAGACAGTGTTCAACCTCAATGCCCCAGTCCCACCAGCTAATGAGACAGAGGCTTTGAACCAGGCCAGCCAATACCAGAACAGCTACAACCAAGCCTTCAGCAGCCAGCCGCAGCATCCTGTGGAGCAGACAGAGATGCAGTCCGAACAACTGCAATCTGTAGTCGGTGCCTTCCATTCCCAAGACCAGTCAGGAGGCCATCCACAGCCTCCCCAGCAGGGCCCAGGCTTCGTCAGGCAGGGTCAGTCCTTCTACAACAGCAGAGGAATGCCTCGTGGTGGACCTCGCAACGCCAGGGGCATGATCAATGGCTACAGAGGCTCATCAAATGGATTCAGAGGTGGCTATGATGGTTATCGTCCTCCTTTTGCCAACAATTCAAACTCTGGTTATGGGCAGACTCAGTTCAACACACCTCGGGATTACTCAAATGGGAATTATCAGAGGGATGGTTACCAACCAAACTACAAGCGTGGAGCTGGTCAGGGACCCAGAGGAGTGTCAAGAGGCAGCTCTCAGGCAATACGATCCTGAAAAGGCCTTTCATAATGACTGTGACTGACTAACTTGCACCACACTGAAAATTCAAGAATGCATTTGCCCCAGCTCACTAatgtccttttttctttttttttgttcttcatcAGTGGTATTTTTCCTGTCTCTTAAATCAAAGTAATGCCTGCTTTGATATTTGGaaatattaaatcatttaaagtCTGAAACACAAGCTGAGCTGTAAATCCAATCATCGATTTACACAAGCAATGTGTTAAAATATTCCTGTAAACTTGAAAGATTTcataagttatttttttgtataaaaaaatgcACCTGCCACTGCTGGTCCAACCCTTGGGAGTTTATTCCCCTTCTCGattcttttgtcattttggtTCTTAAAAGGCGTTTTATGTTCAATGAGCTCCTGTTTCCTTGTTTGTAAATTGATGTTGCTTCATGAGTTTCAATAAAGTTGTGTTGCATACCCAT

Function

GO: NA

KEGG:

id description
K18743 CAPRIN1, GPIAP1; caprin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116652 lncRNA downstream 22089 19774307 ~ 19777043 (-) True G86566
TU116631 lncRNA downstream 73939 19723973 ~ 19725193 (-) True G86549
TU116624 lncRNA downstream 103317 19694995 ~ 19695815 (-) True G86543
TU116619 lncRNA downstream 120043 19674923 ~ 19679089 (-) True G86540
TU116589 lncRNA downstream 181086 19616653 ~ 19618046 (-) True G86517
TU116662 lncRNA upstream 8668 19821540 ~ 19823373 (-) True G86575
TU116708 lncRNA upstream 201466 20014338 ~ 20015812 (-) True G86605
TU116779 lncRNA upstream 428561 20241433 ~ 20241850 (-) True G86652
TU116787 lncRNA upstream 438018 20250890 ~ 20252526 (-) True G86660
TU116788 lncRNA upstream 438018 20250890 ~ 20264206 (-) False G86660
XM_039809695.1 mRNA downstream 994 19788711 ~ 19798138 (-) True nat10
XM_039809697.1 mRNA downstream 994 19788969 ~ 19798138 (-) False nat10
XM_039809696.1 mRNA downstream 996 19788711 ~ 19798136 (-) False nat10
XM_039807431.1 mRNA downstream 37222 19753510 ~ 19761910 (-) False LOC120563329
XM_039809815.1 mRNA upstream 73039 19885911 ~ 19954815 (-) False tspan18b
XM_039809814.1 mRNA upstream 73039 19885911 ~ 19954448 (-) True tspan18b
XM_039808992.1 mRNA upstream 174911 19987783 ~ 20012310 (-) True cd82b
XM_039809180.1 mRNA upstream 203297 20016169 ~ 20059122 (-) True LOC120564329
XM_039809181.1 mRNA upstream 203871 20016743 ~ 20059123 (-) False LOC120564329
unassigned_transcript_376 other downstream 116215 19682846 ~ 19682917 (-) True trnap-agg_7
TU116584 other downstream 227210 19570302 ~ 19571922 (-) False cep152
TU116428 other downstream 410557 19387822 ~ 19388575 (-) True G86402
TU116306 other downstream 481722 19315435 ~ 19317410 (-) False arpp19b
TU116124 other downstream 788216 19007196 ~ 19010916 (-) True G86194
TU116763 other upstream 439767 20252639 ~ 20259259 (-) True G86638
XR_005640056.1 other upstream 994010 20806882 ~ 20828603 (-) False LOC120564033
TU117029 other upstream 1064839 20877711 ~ 20879638 (-) False LOC120563850
TU117396 other upstream 1900170 21713042 ~ 21713554 (-) True G87140
TU117418 other upstream 1922134 21735006 ~ 21739328 (-) True LOC120564778

Expression Profile