RNA id: XM_039809705.1


Basic Information

Item Value
RNA id XM_039809705.1
length 2738
RNA type mRNA
GC content 0.48
exon number 19
gene id terb1
representative False

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 14079176 ~ 14090593 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACGGCAAACGCTTAGCTAACATTTTGATAATTGACTAATGTTAATATGTTGTCTTGTCACCTTAACTTACCCTAACCTTTGTTTAATGAGAAGTGGGGATTAGCTAAATCAACGTTAATACTCCTCAAGCAAAAGTTTGGACATTAGCTACATTTTTGTtcgctaccgttagctagcgaGTTCTGAAAATAGCACAACATATAATGCTAGCTAAATGCTAGACGTGGTTGGATAAGTGATGGTATTCTTGTAATATTAAGTTAGCCATACTATTACTTTGGTGACATTTAACCGTTGTTAATGGTTTTTAAACCAGTGAGGTAGCTAGCTATTAAAAGAGTGACATGGATAATACAGTGGTTTACAGCAGCAGCCGTAAAGTGAATACCACAAGGACAGATCTTAGTTTGCTGCTTGAGTGTCTGAAGTTTCAGATGAAATGTCCCGATTTGCAGAAACAAGCTCTTCTCGCCATTCACTCAATCTGTGAAAAGAGAGAGGATAATGTGGACTTGCTGAGAGAAATGGGAGGTGTGGCATTTGTGTATAACCTCTCCAAATCCAGTATTGTTCGTTCAGATGTAAAGGAGACTGCACTATTTACGCTTGGCACGTTAGCAGAGGCCAATGTGTATTGCAAGAATTCTCTGTGCAGAAAGGAGACATTTGCAGACCTTGCTGGTTTTTTGATGAAAGAAGACATCCCGCTAACACTGAAGAGAGTGTCTGTCTATTTGCTGTCTGTGTTGGTAGCCAACAACAAATCAGGACAGACTCTAGGCCAAACCACTGGCTGCTTGGATATTCTACTGCAGCTTTTCAGGACCACTTCCCCTGTCTCCACAGAGGCTACTTTGAGAGCAGCTAATGCTACTCAAACCTACCAACTTTGGGCCTCTGTGTCTAGTGCTCTCTGTGGATGTGTCAACAACCCTCAGAATGAGGATGGTCAGCGTATTTGTGTAGCAGCCTTTCCCATGATAAAAGTCTGGCTTCAGCAGATTGCTTTGCCATGCACTGAGATTTTCCAACCCATATGTTCCTTCATAGCAATGACAGTTGCAAACAACTCCTGTGTTCAGGAGAGTTTTTCTGCTTTGGGGGGTCTGGATACTCTCACTCTTGCACTGGTTCGTCTAGCTTCTGCGGCAGATACAAGCTTGTTGTCTTGCCAGCTTTCCGTCACTATATCCAAGACCCTGTCAGCTTGCATCACAGATAACTCTTCCCTGGCTTCAGGTCTGGCTCAGTATGGCGTGGTTTCCCACCTCTTCTTCCTGCTGACTAGTCCACACCTGCACCCTGAGGACAGGCTCTCTGTTTTACTCACCTTGGGCCACTGCACTGAATCCTCTGAGGAGCACCAGTCCCAGTTGGTGCAGTGTGGAGGCCTGCCCCTTATCATAACCCTACTCACAGAGGATACAAGTGAGGAGGTTAGGAAGGCTGCTACATTCATATTGCAGACCTGCAAACAGGCCACCATGTCCTTGGGAGTGCCTGAACTGACAGCGAGACAGGGGGAGGGTGAAAATGTGACCCCCCTTACAAACATGGGCGGCTTCAGGAGCTCAGCCAGAGAGGTGCTGCGCAGGATTGAACTGCTAGAGAAGAGACAAGCAAAGGAGGCTAAGGATGAGCAGGAAGACACAGAACCATTAACTTTAACCGAAGGGCTAGGccagctctctctgcctccagCTTTACTGCAGCCTCTGCAGCTGAAGGAGAGgattaaaaccattcccacaGCATATAGACAGAACAGTACTCTTGAACATGTCGAAGCAGGGGGTGACAACTACATTCAAACCTTCAGAAACGTGATCAAGAATACGAGTGACCGTGAACTGAAGCACATGAGCTCCAGTTTAAGTATGCAGGAAGGGAAGGCTAAAACCAGTGAAGGGGATGTGTGGTGTTCCATGTGCAAGGGTACTGGAGCCCTAAAGTCTTCCCATCTGCGGCcagtagagggaggcagagagCCTCATACAGCAGACAGtcAGTTGTTTAAGCCCCCAGCACCAGTGAGGCACAGTGTAccaaaagaaattaaatgtaCTGATGTGGAAGAGTTACAGCACCATGAGATGAGTGAGGTGGGGAACATCTCAGTGGAGGAACACTCACTCTCTAGTATACGGTGTGCAGGTTGTGTGCTGCCTTTTGAGGAGGTGACAAGTCGCACTTTTGCGTCTCTCCAAAGCTCTTGCCACCACAGCTGTGACATGCACAAGGTTCTCCAGGAGGCCACAGAGCAGTTCAGGACTCGTCACTTCAACCTTCTGTTCAGGAGAGAGTACCAAGACGACAGTGTGGAGCAGACAGAACCAGACCCTGAGAGAGTTTCAGCTGCAGAGCCACAGAGAAGCCGGGAGAACTGGAGAGAGGTCTGCCTGACTCCCATACGTAAAGGAGCAGGGAAAGGCAAGCCCTCCCTGCCAGAACACCAGTGGAAGAAGCACAATGGCATCACTTTGACTCCACGGCACAGTGGAGCTAAAAAGCAGATATTCACCTCTCATAACAGGACCGGTCCAGGCTTGACTCCCCTGAAAAGGTCTCGTCTTCCTGAAGAGAAGGGAGAGGAAAGACTTCAGCCCTGAGGAGGTGCGTTGCCTGCTGTGCGGAGTGAAGACTTACGGCTTCTCCTGGAACACCATCTTGTGGTCATACGACTTCCAACCTGGACGCACCAATGTTGACCTGGCCAAAAAATACAGGAGGCTAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114089 lncRNA downstream 7721 14072633 ~ 14072948 (-) True G84719
TU113923 lncRNA downstream 395200 13683824 ~ 13685469 (-) True G84597
TU113916 lncRNA downstream 435821 13644417 ~ 13644848 (-) True G84592
TU113907 lncRNA downstream 636057 13434739 ~ 13444612 (-) True G84585
TU113867 lncRNA downstream 695464 13325986 ~ 13385205 (-) False LOC120564547
XR_005640108.1 lncRNA upstream 132604 14223197 ~ 14232530 (-) False LOC120564470
TU114136 lncRNA upstream 132657 14223250 ~ 14236952 (-) True LOC120564470
TU114142 lncRNA upstream 132657 14223250 ~ 14236952 (-) False LOC120564470
TU114147 lncRNA upstream 146989 14237582 ~ 14238451 (-) True G84751
TU114148 lncRNA upstream 149928 14240521 ~ 14241054 (-) True G84752
XM_039808309.1 mRNA downstream 17926 14053952 ~ 14062743 (-) False neto2b
XM_039808308.1 mRNA downstream 17926 14053952 ~ 14062743 (-) True neto2b
XM_039808310.1 mRNA downstream 18176 14053952 ~ 14062493 (-) False neto2b
XM_039808313.1 mRNA downstream 34351 14039429 ~ 14046318 (-) True LOC120563866
XM_039807392.1 mRNA downstream 42953 14031108 ~ 14037716 (-) True zgc:77752
XM_039809479.1 mRNA upstream 19873 14110466 ~ 14198123 (-) False frmd4a
XM_039809470.1 mRNA upstream 19873 14110466 ~ 14184687 (-) False frmd4a
XM_039809484.1 mRNA upstream 19873 14110466 ~ 14184687 (-) False frmd4a
XM_039809471.1 mRNA upstream 19873 14110466 ~ 14184406 (-) False frmd4a
XM_039809469.1 mRNA upstream 19873 14110466 ~ 14184406 (-) False frmd4a
TU114030 other downstream 47454 14031104 ~ 14033215 (-) False zgc:77752
TU113910 other downstream 462773 13573831 ~ 13617896 (-) True mafb
TU113814 other downstream 849574 13230617 ~ 13231095 (-) True G84530
TU113260 other downstream 1936123 12141523 ~ 12144546 (-) True G84123
TU113209 other downstream 2192271 11888027 ~ 11888398 (-) True G84083
TU114145 other upstream 132657 14223250 ~ 14236952 (-) False LOC120564470
TU114408 other upstream 411367 14501960 ~ 14507201 (-) False LOC120563775
TU114449 other upstream 875862 14966455 ~ 14967447 (-) False si:ch1073-390k14.1
TU114482 other upstream 975446 15066039 ~ 15073350 (-) True G85014
TU114636 other upstream 1388389 15478982 ~ 15483926 (-) True ttc23

Expression Profile