RNA id: XM_039809715.1


Basic Information

Item Value
RNA id XM_039809715.1
length 2470
RNA type mRNA
GC content 0.41
exon number 3
gene id cdkn1bb
representative True

Chromosome Information

Item Value
chromosome id NC_053119.1
NCBI id CM020916.1
chromosome length 42187026
location 23144257 ~ 23148303 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCGAGTCAAACTCCACTCTCAATCCCAAGTACATCTCTAAATCGCCATATTGGGTACTGAGAAGGTTTGTCTGCAGTTCCTCTCACTACGGGACGAATTTGACAGAGCGGCTTCAGTTCCTGGCCACTTTGTTTTGATGATCCGCGGAGACAACTTTCGGCGCGGCCGTTACCGTTTCCAGCCCGACGTATGCATGGCATAAGTCGTTTTACGCTTGTTTTGGATCTTGCTCAGCGACGAGGAGATACCCGTTGTTTTTGAGCGGTgggttttttcttttgaaaactGGACGCTGCAGGCTGTTTGAAAAATTTCGTCTTAATTTAGGGGGAAATGTCAGATGTTCGACTATCAAACGGGAGCCCGACTTTGGAGCGGACGGACTCCCGGGTGTCGGATCACCCAAAACCGTCAGCTTGCAGAAGCCTCTTCGGCTCGGTGGATCACGAAGAGTTAAAGAGGGAGTTAAAGGGACATTTGCGGGAGATGGAGGAGGCTGCCTCCGCCAAGTGGGGCTTCGACTTCGCCAATCACACGCCGCTGGCCAACGGCAGGCTCAAGTGGGAATTAGTGGATTGTAGAGACGTCCCGGATTTCTACAACAAGCAACCGCGGAGGGAGAAGAGAGTCTGCTCTGCTGGGAATAACAATGTGGATCTAAATGGGAATCATAACTGTGTTGTGGTGGCTCCGAGCGAAGACACCGACAGGTCTGACGCGCAGATGGAGTGCACGGAACAGTGCACCGGGCTGAGGAAAAGACCTGCATGTCACGACCCCTCGGCCCAAAATAAGAGGTCACACACCAGCTCAGATGAGGTTACTTGTCCAAGCCTGGGCCACTCTACAGAACACACACCCAGAAAGACCAGTCCCAAGAGGCAAACGTGAGGGCCAGGAACGAGCCAAAGATGTATTTCCCCTGTTACGTGGGAAACCTCAGTGTTGGCCGATTTTGGAAGAGGAACTACACAGCATCAGAAACATATCAACTCTCCTGAAGATGGGGGAGGACGCTGTTGAAGCACTGAATAGAAACACTAAAGTTGTGGCACTCAATTAAAAAGTTACTGCCTCTAAAAGCAGTCAATGTAGCAGTATGCAATTAGGTTGGATTTCCTTTTTTGCTCATTTTTTTACTACCTGtgtgtaaataaatatacatattatattatatttctcTCCATATGTAGCACATAAGAAAATATGATTTGAACACAAATCCTTTATGTAAAAAGGTGTGAATTTTTGATTTGACTTGAAGAATTGCAGTGTAGTTTGATACATGTTTCCAAAATgctgttctgtttttttgtcattttattttctgaaagGCGGTGTGACTTTGACACGGTCACTAATtgctacatttaaaaacaaaatcatggCTTCTTACAGTTTCTTAACAGTGTATCTTCACTCCGTCATCTTCCTAACTCAGCAGTGAAGAATGGTACAAATGTAGCTCatctgttttttgtattttattttatttttttcctttggtCACTTCATTTTCACCAAGTGCAGGTTCTCCTATTAGATCTATTTCCCCAGGAAATCAACACagacaaaaataattaatatttcTGTTAGGACTTCCTTTACATCAtctgatatttattttttgaaaggtGCTTTTAGCATCAGCTGAATCCTggaatatgatttttttaagtTCTCCTGCACACCTCAGCCACATGTAATGGTGTGTTTGATTTGGAGTTGTGAGGTACTCTGATATTGAAGGACAAAGACCATACAAACTGCACAGCTTGTGTTGTAAAGTCATCCTCTCCTTGACTTGATTCCTTTTTGTTTCATCAGCCTTAATGCTCTTCACAGAGGAGGTATTCTGAAAAGGGTTGAATGTCCTACAATACCAAAAACATGGTTGCTTCAGTATGGTTGCCAGCACTGCCTGTGCGCCTTAATTgacttcacatttttttttgtgataacCTAGATATAAATTTCCATTTGTTTGTACTTGTTTCACCAATGTTGTTAGCCTGCTGAGGATGCAAATGTGCACATCACAAGCATCTAAAAGCTTCCCTTTATTTGCCTAAAGTGTAGGTTATATTCAAAGAGACCAGTGTACAcctggatggagagagagagaacagaatcGCAGTCACCATgcctgtgtatttgtgtaaatCTTTGCAATGTACCTATGTACATAATTTTGTAAAAACACTGAGAAATTATACTAACTTATTTAtgtcaagcttttttttttttatgtagaatAAAAAATGGGGTTTTGATTACGGTTATCCAAAGTGGCATTTACTTTATTataattgttgtattttgttaaagcatatttttggtagtttttttttgttttttttcttatcaaTAAGGTTGCAAACTGAGCCTGATTAAAATATTTGATGTGCATTTTGTAATGTGTGGTTATAAAATGTGTTGAAATCAATTAAAAGAGAAAATTATATCTA

Function

GO:

id name namespace
GO:0071901 negative regulation of protein serine/threonine kinase activity biological_process
GO:0007050 cell cycle arrest biological_process
GO:0005634 nucleus cellular_component
GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity molecular_function

KEGG:

id description
K06624 CDKN1B, P27, KIP1; cyclin-dependent kinase inhibitor 1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117745 lncRNA downstream 306391 22761185 ~ 22837866 (-) False G87400
TU117746 lncRNA downstream 306422 22761185 ~ 22837835 (-) False G87400
TU117747 lncRNA downstream 306422 22834605 ~ 22837835 (-) True G87400
XR_005639987.1 lncRNA downstream 461981 22577017 ~ 22682276 (-) True LOC120563633
TU117635 lncRNA downstream 754041 22387995 ~ 22390216 (-) True G87329
TU117838 lncRNA upstream 816 23149119 ~ 23149344 (-) True G87464
XR_005640017.1 lncRNA upstream 50269 23198572 ~ 23217138 (-) False LOC120563856
TU117844 lncRNA upstream 50285 23198588 ~ 23224641 (-) True LOC120563856
TU117845 lncRNA upstream 82935 23231238 ~ 23238532 (-) True G87469
TU117898 lncRNA upstream 267460 23415763 ~ 23417853 (-) False LOC120564579
XM_039807735.1 mRNA downstream 200781 22934142 ~ 22943476 (-) True mrps35
XM_039808041.1 mRNA downstream 300494 22837978 ~ 22843763 (-) True adck2
XM_039809502.1 mRNA downstream 386267 22746489 ~ 22757990 (-) False pus7
XM_039809500.1 mRNA downstream 386267 22746489 ~ 22757990 (-) True pus7
XM_039809501.1 mRNA downstream 386297 22746489 ~ 22757960 (-) False pus7
XM_039807846.1 mRNA upstream 2416 23150719 ~ 23156968 (-) True yars2
XM_039807850.1 mRNA upstream 12847 23161150 ~ 23177303 (-) True pparab
XM_039807847.1 mRNA upstream 14474 23162777 ~ 23191431 (-) False pparab
XM_039807849.1 mRNA upstream 14474 23162777 ~ 23181566 (-) False pparab
XM_039808895.1 mRNA upstream 228278 23376581 ~ 23407669 (-) False fbln1
XR_005639990.1 other downstream 438061 22689161 ~ 22706196 (-) True parvg
XR_005639989.1 other downstream 438061 22691048 ~ 22706196 (-) False parvg
TU117418 other downstream 1404929 21735006 ~ 21739328 (-) True LOC120564778
TU117419 other downstream 1404929 21735006 ~ 21739328 (-) False LOC120564778
TU117396 other downstream 1430703 21713042 ~ 21713554 (-) True G87140
TU117944 other upstream 346027 23494330 ~ 23498659 (-) True G87538
TU118073 other upstream 590679 23738982 ~ 23741190 (-) True G87624
unassigned_transcript_379 other upstream 756799 23905102 ~ 23905173 (-) True trnam-cau_7
XR_005640032.1 other upstream 760866 23909169 ~ 23916202 (-) False LOC120563922
XR_005640031.1 other upstream 760866 23909169 ~ 23916202 (-) False LOC120563922

Expression Profile